| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella sp. ANA-3 | 1.0 | Shewana3_1236 | guaA | GMP synthase (RefSeq) | 1.0 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.86 | 12 |
| Shewanella oneidensis MR-1 | 0.99 | SO3292 | guaA | GMP synthase (NCBI ptt file) | 0.85 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.94 | Shew_1298 | guaA | bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) | 0.59 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.58 | 39 |
| Shewanella amazonensis SB2B | 0.93 | Sama_2358 | guaA | GMP synthase (RefSeq) | 0.53 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.86 | EX28DRAFT_0140 | | GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | 0.44 | EX28DRAFT_0046 | | shikimate dehydrogenase | — | — |
| Enterobacter sp. TBS_079 | 0.86 | MPMX20_03381 | | GMP synthase [glutamine-hydrolyzing] | 0.43 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Klebsiella michiganensis M5al | 0.85 | BWI76_RS21025 | | GMP synthase (glutamine-hydrolyzing) | 0.42 | BWI76_RS25645 | | shikimate dehydrogenase | — | — |
| Pantoea sp. MT58 | 0.85 | IAI47_05110 | | glutamine-hydrolyzing GMP synthase | 0.44 | IAI47_02315 | | shikimate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.85 | IAI46_19205 | | glutamine-hydrolyzing GMP synthase | 0.46 | IAI46_23240 | | shikimate dehydrogenase | — | — |
| Dickeya dadantii 3937 | 0.85 | DDA3937_RS15415 | | glutamine-hydrolyzing GMP synthase | 0.47 | DDA3937_RS19100 | | shikimate dehydrogenase | — | — |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS15530 | | glutamine-hydrolyzing GMP synthase | 0.46 | HGI48_RS19190 | | shikimate dehydrogenase | — | — |
| Pectobacterium carotovorum WPP14 | 0.85 | HER17_RS06160 | | glutamine-hydrolyzing GMP synthase | 0.44 | HER17_RS02250 | | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC102 | 0.84 | NIAGMN_19535 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | NIAGMN_15325 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.84 | OKFHMN_21765 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | OKFHMN_17565 | aroE | shikimate dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.84 | GFF2161 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.45 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Escherichia coli Nissle 1917 | 0.84 | ECOLIN_RS14235 | | glutamine-hydrolyzing GMP synthase | 0.45 | ECOLIN_RS18840 | | shikimate dehydrogenase | — | — |
| Escherichia fergusonii Becca | 0.84 | EFB2_01386 | | GMP synthase [glutamine-hydrolyzing] | 0.45 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.84 | OHPLBJKB_01202 | | GMP synthase [glutamine-hydrolyzing] | 0.46 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Escherichia coli ECRC101 | 0.84 | MCAODC_12295 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | MCAODC_08085 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECOR38 | 0.84 | HEPCGN_20905 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | HEPCGN_16385 | aroE | shikimate dehydrogenase | low | > 85 |
| Escherichia coli ECRC98 | 0.84 | JDDGAC_25440 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | JDDGAC_21185 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC99 | 0.84 | KEDOAH_06455 | guaA | glutamine-hydrolyzing GMP synthase | 0.45 | KEDOAH_10585 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECOR27 | 0.84 | NOLOHH_13415 | guaA | glutamine-hydrolyzing GMP synthase | 0.46 | NOLOHH_09355 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli BL21 | 0.84 | ECD_02399 | | GMP synthetase (glutamine aminotransferase) | 0.46 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.57 | 5 |
| Rahnella sp. WP5 | 0.84 | EX31_RS20445 | | glutamine-hydrolyzing GMP synthase | 0.42 | EX31_RS15950 | | shikimate dehydrogenase | — | — |
| Escherichia coli BW25113 | 0.84 | b2507 | guaA | bifunctional GMP synthase/glutamine amidotransferase protein (NCBI) | 0.46 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | — | — |
| Dickeya dianthicola ME23 | 0.84 | DZA65_RS16605 | | glutamine-hydrolyzing GMP synthase | 0.47 | DZA65_RS20315 | | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC62 | 0.84 | BNILDI_12215 | guaA | glutamine-hydrolyzing GMP synthase | 0.46 | BNILDI_02165 | aroE | shikimate dehydrogenase | — | — |
| Alteromonas macleodii MIT1002 | 0.83 | MIT1002_02778 | | GMP synthase [glutamine-hydrolyzing] | 0.33 | MIT1002_00029 | | Shikimate dehydrogenase | — | — |
| Erwinia tracheiphila SCR3 | 0.82 | LU632_RS17750 | guaA | glutamine-hydrolyzing GMP synthase | 0.43 | LU632_RS22445 | aroE | shikimate dehydrogenase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.81 | CSW01_03985 | | GMP synthase (glutamine-hydrolyzing) | 0.50 | CSW01_00280 | | shikimate dehydrogenase | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.76 | B158DRAFT_1159 | | GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | 0.29 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas stutzeri RCH2 | 0.72 | Psest_1287 | | GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | 0.49 | Psest_0029 | | shikimate 5-dehydrogenase | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_2050 | | bifunctional GMP synthase/glutamine amidotransferase protein | 0.46 | HP15_3750 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS24730 | | glutamine-hydrolyzing GMP synthase | 0.47 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.72 | PS417_23070 | | GMP synthase | 0.48 | PS417_00125 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS24730 | | glutamine-hydrolyzing GMP synthase | 0.47 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.72 | PfGW456L13_4817 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.49 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_06520 | | GMP synthase | 0.48 | AO356_11315 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_3164 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.48 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_839 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.48 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_15955 | | GMP synthase | 0.48 | AO353_10670 | | shikimate dehydrogenase | — | — |
| Lysobacter sp. OAE881 | 0.71 | ABIE51_RS09480 | | glutamine-hydrolyzing GMP synthase | 0.31 | ABIE51_RS01815 | | shikimate dehydrogenase | — | — |
| Pseudomonas sp. RS175 | 0.71 | PFR28_00311 | | GMP synthase [glutamine-hydrolyzing] | 0.48 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.71 | Psyr_1262 | | GMP synthase (glutamine-hydrolyzing) | 0.50 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.71 | Psyr_1262 | | GMP synthase (glutamine-hydrolyzing) | 0.50 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas putida KT2440 | 0.71 | PP_1032 | | glutamine-hydrolyzing GMP synthase | 0.49 | PP_0074 | | shikimate 5-dehydrogenase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.71 | Xcc-8004.2393.1 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.33 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas sp. S08-1 | 0.70 | OH686_17595 | | GMP synthase [glutamine-hydrolyzing], amidotransferase subunit / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit | 0.49 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS05405 | | glutamine-hydrolyzing GMP synthase | 0.32 | ABZR86_RS14985 | | shikimate dehydrogenase | — | — |
| Rhodanobacter denitrificans MT42 | 0.68 | LRK55_RS18105 | | glutamine-hydrolyzing GMP synthase | 0.33 | LRK55_RS08360 | | shikimate dehydrogenase | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_07090 | guaA | glutamine-hydrolyzing GMP synthase | 0.30 | OKGIIK_15365 | aroE | shikimate dehydrogenase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS00110 | | glutamine-hydrolyzing GMP synthase | 0.33 | LRK54_RS08595 | | shikimate dehydrogenase | — | — |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_00074 | | GMP synthase [glutamine-hydrolyzing] | 0.37 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.66 | HSERO_RS11020 | | GMP synthase | 0.46 | HSERO_RS01990 | | shikimate 5-dehydrogenase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.66 | QEN71_RS06550 | | glutamine-hydrolyzing GMP synthase | 0.45 | QEN71_RS27130 | | shikimate dehydrogenase | — | — |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS12010 | | GMP synthase [glutamine-hydrolyzing] | 0.45 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.64 | H281DRAFT_00637 | | GMP synthase (glutamine-hydrolyzing) | 0.46 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | — | — |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002476 | | GMP synthase (glutamine-hydrolyzing) | 0.45 | ABIE53_003560 | | shikimate dehydrogenase | — | — |
| Dechlorosoma suillum PS | 0.63 | Dsui_2670 | | GMP synthase (glutamine-hydrolyzing) | 0.46 | Dsui_0443 | | shikimate 5-dehydrogenase | — | — |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS13855 | | glutamine-hydrolyzing GMP synthase | 0.43 | UW163_RS07680 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS00525 | | glutamine-hydrolyzing GMP synthase | 0.43 | RALBFv3_RS05945 | | shikimate dehydrogenase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS11975 | | glutamine-hydrolyzing GMP synthase | 0.43 | ABZR87_RS01605 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum PSI07 | 0.62 | RPSI07_RS16965 | | glutamine-hydrolyzing GMP synthase | 0.44 | RPSI07_RS11300 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS07180 | | glutamine-hydrolyzing GMP synthase | 0.44 | RS_RS13890 | | shikimate dehydrogenase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS11740 | | GMP synthase | 0.40 | RR42_RS17645 | | shikimate dehydrogenase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF4357 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.37 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS04890 | | glutamine-hydrolyzing GMP synthase | 0.40 | ABCV34_RS11620 | | shikimate dehydrogenase | — | — |
| Variovorax sp. SCN45 | 0.59 | GFF206 | | GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) | 0.34 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_2854 | | GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | 0.37 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS16400 | | glutamine-hydrolyzing GMP synthase | 0.32 | ABID97_RS06300 | | shikimate dehydrogenase | — | — |
| Azospirillum brasilense Sp245 | 0.57 | AZOBR_RS16060 | | GMP synthase | 0.19 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | — | — |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_00831 | | GMP synthase [glutamine-hydrolyzing] | 0.20 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.55 | A4249_RS03045 | | glutamine-hydrolyzing GMP synthase | 0.14 | A4249_RS13660 | | shikimate dehydrogenase | — | — |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_08155 | | glutamine-hydrolyzing GMP synthase | 0.15 | HUW76_10445 | | shikimate dehydrogenase | — | — |
| Rhodospirillum rubrum S1H | 0.55 | Rru_A0355 | | Glutamine amidotransferase class-I (NCBI) | 0.19 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | — | — |
| Bosea sp. OAE506 | 0.55 | ABIE41_RS15990 | | glutamine-hydrolyzing GMP synthase | 0.19 | ABIE41_RS04650 | | shikimate dehydrogenase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.54 | AMB_RS03760 | | glutamine-hydrolyzing GMP synthase | 0.15 | AMB_RS23010 | | shikimate dehydrogenase | — | — |
| Sinorhizobium meliloti 1021 | 0.53 | SMc00394 | | GMP synthase | 0.20 | SMc02791 | | shikimate 5-dehydrogenase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.53 | TX73_011370 | | glutamine-hydrolyzing GMP synthase | 0.17 | TX73_022410 | | shikimate dehydrogenase | — | — |
| Rhizobium sp. OAE497 | 0.53 | ABIE40_RS01255 | | glutamine-hydrolyzing GMP synthase | 0.20 | ABIE40_RS19250 | | shikimate dehydrogenase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.53 | Ga0059261_0317 | | GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | 0.17 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Agrobacterium fabrum C58 | 0.53 | Atu0281 | | GMP synthase | 0.21 | Atu0003 | | shikimate 5-dehydrogenase | — | — |
| Caulobacter crescentus NA1000 | 0.53 | CCNA_01692 | | GMP synthase GuaA | 0.18 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.53 | CCNA_01692 | | GMP synthase GuaA | 0.18 | CCNA_00003 | | shikimate 5-dehydrogenase | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_c14610 | | GMP synthase | 0.23 | PGA1_c35150 | | shikimate dehydrogenase AroE | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.52 | ABZR88_RS06455 | | glutamine-hydrolyzing GMP synthase | 0.16 | ABZR88_RS20055 | | shikimate dehydrogenase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.52 | DvMF_3125 | guaA | GMP synthase (RefSeq) | 0.16 | DvMF_1962 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.52 | DVU1043 | guaA | GMP synthase (TIGR) | 0.21 | DVU0115 | aroE | shikimate 5-dehydrogenase (TIGR) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.51 | CA265_RS15025 | | GMP synthase (glutamine-hydrolyzing) | 0.13 | CA265_RS19745 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Synechococcus elongatus PCC 7942 | 0.51 | Synpcc7942_0189 | guaA | bifunctional GMP synthase/glutamine amidotransferase protein | 0.18 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.50 | Dshi_1587 | | GMP synthase, large subunit (RefSeq) | 0.23 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.50 | BACOVA_05099 | | GMP synthase (glutamine-hydrolyzing) domain protein | 0.12 | BACOVA_05065 | | putative shikimate dehydrogenase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.50 | Echvi_0152 | | GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | 0.12 | Echvi_1145 | | Shikimate 5-dehydrogenase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.49 | BT4265 | | GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) | 0.12 | BT4215 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Bacteroides stercoris CC31F | 0.49 | HMPREF1181_RS06130 | | glutamine-hydrolyzing GMP synthase | 0.11 | HMPREF1181_RS06320 | | shikimate dehydrogenase | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.49 | CA264_08025 | | GMP synthase (glutamine-hydrolyzing) | 0.14 | CA264_19075 | | shikimate dehydrogenase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.49 | HMPREF1078_RS10120 | | glutamine-hydrolyzing GMP synthase | 0.13 | HMPREF1078_RS14200 | | shikimate dehydrogenase | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.49 | HMPREF1058_RS06040 | | glutamine-hydrolyzing GMP synthase | 0.13 | HMPREF1058_RS16750 | | shikimate dehydrogenase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.48 | ABI39_RS17985 | | glutamine-hydrolyzing GMP synthase | 0.12 | ABI39_RS12665 | | shikimate dehydrogenase | low | > 72 |
| Mycobacterium tuberculosis H37Rv | 0.46 | Rv3396c | | Probable GMP synthase [glutamine-hydrolyzing] GuaA (glutamine amidotransferase) (GMP synthetase) | 0.10 | Rv2552c | | Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) | — | — |
Not shown: 1 genomes with orthologs for Shewana3_1236 only; 2 genomes with orthologs for Shewana3_0043 only