Conservation of cofitness between Sama_0337 and Sama_0338 in Shewanella amazonensis SB2B

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 1.0 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.99 2
Shewanella sp. ANA-3 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.84 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.99 2
Shewanella loihica PV-4 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.81 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.98 26
Shewanella oneidensis MR-1 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.86 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.98 7
Escherichia fergusonii Becca 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.59 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.59 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 73
Escherichia coli BW25113 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.59 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.99 3
Escherichia coli ECOR27 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.59 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit 0.90 52
Escherichia coli ECRC62 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.59 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit 0.95 45
Escherichia coli BL21 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit 0.59 ECD_00073 3-isopropylmalate dehydratase small subunit 0.94 15
Escherichia coli ECOR38 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.59 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit 0.89 62
Escherichia coli Nissle 1917 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.59 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit 0.87 24
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.58 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit 0.94 20
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.58 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.58 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.58 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit 0.94 50
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.58 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit 0.97 7
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.62 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.88 18
Klebsiella michiganensis M5al 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.61 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.98 1
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.61 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.97 20
Enterobacter sp. TBS_079 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.61 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.97 3
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.62 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.97 26
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.61 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.63 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit 0.95 3
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.64 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 86
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.64 CSW01_12610 3-isopropylmalate dehydratase small subunit low > 62
Dickeya dianthicola ME23 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.62 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.95 2
Dickeya dianthicola 67-19 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.62 HGI48_RS18070 3-isopropylmalate dehydratase small subunit 0.87 3
Pectobacterium carotovorum WPP14 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.64 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.99 5
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.55 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit 0.93 4
Alteromonas macleodii MIT1002 0.66 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.59 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 0.98 26
Azospirillum sp. SherDot2 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.50 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1 0.93 2
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.47 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) 0.77 38
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.55 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit 0.90 2
Azospirillum brasilense Sp245 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.49 AZOBR_RS14135 isopropylmalate isomerase 0.92 3
Sinorhizobium meliloti 1021 0.61 SMc03823 isopropylmalate isomerase large subunit 0.46 SMc03795 isopropylmalate isomerase small subunit 0.95 20
Rhodopseudomonas palustris CGA009 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit 0.48 TX73_001215 3-isopropylmalate dehydratase small subunit
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.49 AMB_RS20565 3-isopropylmalate dehydratase small subunit
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.54 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit 0.47 22
Agrobacterium fabrum C58 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.47 Atu2790 3-isopropylmalate dehydratase, small subunit 0.96 7
Rhizobium sp. OAE497 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.46 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit 0.98 7
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.51 RR42_RS14390 3-isopropylmalate dehydratase 0.95 2
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.52 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.52 PP_1986 3-isopropylmalate dehydratase small subunit 0.86 19
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.53 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.94 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.53 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.94 7
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.53 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.91 10
Pseudomonas sp. RS175 0.60 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.52 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 0.72 7
Pseudomonas stutzeri RCH2 0.59 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.55 Psest_2590 3-isopropylmalate dehydratase, small subunit 0.89 14
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS16515 isopropylmalate isomerase 0.49 HSERO_RS16505 3-isopropylmalate dehydratase small subunit 0.96 6
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.52 AO353_20625 3-isopropylmalate dehydratase 0.97 4
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.52 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.98 2
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.52 AO356_21405 3-isopropylmalate dehydratase 0.95 8
Mycobacterium tuberculosis H37Rv 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.35 Rv2987c Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.52 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit 0.89 9
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.52 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.88 3
Ralstonia solanacearum GMI1000 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.52 RS_RS09995 3-isopropylmalate dehydratase small subunit
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.52 PS417_18595 3-isopropylmalate dehydratase 0.93 3
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.51 QEN71_RS17615 3-isopropylmalate dehydratase small subunit 0.95 1
Bosea sp. OAE506 0.59 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.45 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.52 HP15_1833 isopropylmalate isomerase small subunit 0.95 5
Ralstonia solanacearum UW163 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.52 UW163_RS11110 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.52 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit 0.65 8
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.52 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.78 10
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.52 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.93 3
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33915 isopropylmalate isomerase 0.50 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit 0.75 56
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.51 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit 0.83 2
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.54 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.96 2
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.53 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.54 OH686_04475 3-isopropylmalate dehydratase small subunit 0.84 15
Acinetobacter radioresistens SK82 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.52 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 1.00 2
Paraburkholderia graminis OAS925 0.58 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.50 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit 0.96 2
Acidovorax sp. GW101-3H11 0.58 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.53 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.97 2
Variovorax sp. OAS795 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.55 ABID97_RS08460 3-isopropylmalate dehydratase small subunit
Variovorax sp. SCN45 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.55 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.79 3
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.48 Dsui_3199 3-isopropylmalate dehydratase, small subunit
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.46 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 67
Caulobacter crescentus NA1000 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.46 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.99 2
Dinoroseobacter shibae DFL-12 0.56 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.50 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq) 0.76 7
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_09435 3-isopropylmalate dehydratase large subunit 0.39 CA264_09440 3-isopropylmalate dehydratase small subunit 0.50 2
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.45 PGA1_c29790 3-isopropylmalate dehydratase small subunit 0.95 2
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.38 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit 0.97 26
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.41 CA265_RS15840 3-isopropylmalate dehydratase small subunit 0.94 12
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.40 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit
Bifidobacterium breve UCC2003 0.52 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.39 BBR_RS19625 3-isopropylmalate dehydratase small subunit 0.94 1
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.41 LRK54_RS07370 3-isopropylmalate dehydratase small subunit low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.41 LRK55_RS07100 3-isopropylmalate dehydratase small subunit low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.35 Echvi_2060 3-isopropylmalate dehydratase, small subunit
Lysobacter sp. OAE881 0.51 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.42 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit 0.90 49
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.37 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.99 42
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.42 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.96 17
Bacteroides ovatus ATCC 8483 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.33 BACOVA_04602 3-isopropylmalate dehydratase, small subunit 0.97 7
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.35 HMPREF1181_RS14140 3-isopropylmalate dehydratase small subunit 0.95 3
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.33 BT1859 3-isopropylmalate dehydratase small subunit (NCBI ptt file) 0.89 12
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.29 Synpcc7942_2548 leuD isopropylmalate isomerase small subunit
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.39 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 52
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.34 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit 0.91 55
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.33 HMPREF1058_RS14555 3-isopropylmalate dehydratase small subunit 0.91 2
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.33 ABI39_RS10205 3-isopropylmalate dehydratase small subunit 0.91 4
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.17 DvMF_1793 3-isopropylmalate dehydratase, small subunit (RefSeq) 0.97 6

Not shown: 3 genomes with orthologs for Sama_0337 only; 0 genomes with orthologs for Sama_0338 only