Conservation of cofitness between Shew_3470 and Shew_1031 in Shewanella loihica PV-4

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 1.0 Shew_1031 gltD glutamate synthase subunit beta (RefSeq) 0.98 18
Shewanella sp. ANA-3 0.90 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.87 Shewana3_3051 gltD glutamate synthase subunit beta (RefSeq) 0.91 42
Shewanella oneidensis MR-1 0.88 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.86 SO1324 gltD glutamate synthase, small subunit (NCBI ptt file) 0.88 63
Shewanella amazonensis SB2B 0.86 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.85 Sama_0856 gltD glutamate synthase subunit beta (RefSeq) low > 62
Dickeya dadantii 3937 0.72 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.69 DDA3937_RS01660 FAD-dependent oxidoreductase 0.68 46
Escherichia fergusonii Becca 0.72 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.69 EFB2_00610 Glutamate synthase [NADPH] small chain low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.69 EX28DRAFT_3276 glutamate synthase small subunit family protein, proteobacterial 0.74 39
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 NIAGMN_15640 gltD glutamate synthase subunit GltD 0.96 38
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.69 EX31_RS12510 FAD-dependent oxidoreductase 0.97 34
Escherichia coli BL21 0.72 ECD_00074 3-isopropylmalate dehydratase large subunit 0.69 ECD_03078 glutamate synthase, 4Fe-4S protein, small subunit 0.69 61
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 OKFHMN_17880 gltD glutamate synthase subunit GltD 0.91 60
Escherichia coli BW25113 0.72 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.69 b3213 gltD glutamate synthase, 4Fe-4S protein, small subunit (NCBI) low > 76
Escherichia coli ECRC62 0.72 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 BNILDI_01855 gltD glutamate synthase subunit GltD 0.89 70
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 KEDOAH_10270 gltD glutamate synthase subunit GltD
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 MCAODC_08400 gltD glutamate synthase subunit GltD low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.69 ECOLIN_RS18480 glutamate synthase subunit GltD low > 55
Escherichia coli ECOR27 0.72 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 NOLOHH_09680 gltD glutamate synthase subunit GltD 0.93 45
Escherichia coli ECOR38 0.72 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 HEPCGN_16755 gltD glutamate synthase subunit GltD 0.77 78
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 JDDGAC_21505 gltD glutamate synthase subunit GltD 0.91 21
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.69 OHPLBJKB_00487 Glutamate synthase [NADPH] small chain low > 74
Enterobacter sp. TBS_079 0.71 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.69 MPMX20_04127 Glutamate synthase [NADPH] small chain 0.67 69
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.68 IAI46_22350 glutamate synthase small subunit 0.70 29
Klebsiella pneumoniae MKP103 0.71 KDGMDA_12900 3-isopropylmalate dehydratase large subunit 1 0.68 KDGMDA_06150 Glutamate synthase [NADPH] small chain low > 95
Dickeya dianthicola ME23 0.71 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.69 DZA65_RS01630 FAD-dependent oxidoreductase 0.74 28
Dickeya dianthicola 67-19 0.71 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.69 HGI48_RS01555 glutamate synthase small subunit 0.71 52
Klebsiella michiganensis M5al 0.71 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.68 BWI76_RS25320 glutamate synthase 0.65 71
Pectobacterium carotovorum WPP14 0.71 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.68 HER17_RS19915 glutamate synthase small subunit low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.69 GFF2957 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 78
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.66 CSW01_12035 glutamate synthase small subunit low > 62
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.66 LU632_RS21320 glutamate synthase small subunit low > 73
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_06005 leuC 3-isopropylmalate dehydratase large subunit 0.66 IJEDHG_13700 glutamate synthase small subunit low > 61
Alteromonas macleodii MIT1002 0.68 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.66 MIT1002_03140 Glutamate synthase [NADPH] small chain 0.98 25
Azospirillum sp. SherDot2 0.65 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.37 MPMX19_02658 Glutamate synthase [NADPH] small chain 0.76 35
Agrobacterium fabrum C58 0.63 Atu2709 3-isopropylmalate dehydratase, large subunit 0.26 Atu3783 glutamate synthase subunit beta 0.88 38
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.38 Rru_A0018 Glutamate synthase, NADH/NADPH, small subunit 2 (NCBI)
Sinorhizobium meliloti 1021 0.63 SMc03823 isopropylmalate isomerase large subunit 0.25 SMc04026 glutamate synthase 0.89 46
Rhizobium sp. OAE497 0.62 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.28 ABIE40_RS16270 glutamate synthase subunit beta
Methylophilus sp. DMC18 0.62 GFF646 3-isopropylmalate dehydratase large subunit 0.25 GFF2800 Glutamate synthase [NADPH] small chain
Magnetospirillum magneticum AMB-1 0.62 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.39 AMB_RS02690 dihydropyrimidine dehydrogenase subunit A
Rhodopseudomonas palustris CGA009 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit 0.27 TX73_004595 glutamate synthase subunit beta
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.25 ABZR87_RS02565 glutamate synthase subunit beta 0.77 32
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.25 ABCV34_RS11155 glutamate synthase subunit beta low > 48
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS16515 isopropylmalate isomerase 0.24 HSERO_RS19590 dihydropyrimidine dehydrogenase subunit A 0.50 62
Pseudomonas aeruginosa MRSN321 0.60 DY961_RS01320 leuC;go_component=3-isopropylmalate 3-isopropylmalate dehydratase large subunit 0.66 DY961_RS10995 FAD-dependent oxidoreductase 0.77 48
Bosea sp. OAE506 0.60 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.25 ABIE41_RS08570 glutamate synthase subunit beta
Pseudomonas aeruginosa PUPa3 0.60 DQ20_RS34235 leuC;go_component=3-isopropylmalate 3-isopropylmalate dehydratase large subunit 0.66 DQ20_RS51080 FAD-dependent oxidoreductase 0.73 52
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.67 PP_5075 glutamate synthase (NADPH) beta subunit low > 96
Ralstonia solanacearum GMI1000 0.60 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.24 RS_RS14855 glutamate synthase subunit beta 0.39 31
Pseudomonas aeruginosa PA14 0.60 IKLFDK_15880 3-isopropylmalate dehydratase large subunit 0.66 IKLFDK_28360 glutamate synthase small subunit 0.74 49
Pseudomonas sp. BP01 0.60 JOY50_RS16630 leuC 3-isopropylmalate dehydratase large subunit 0.66 JOY50_RS09325 FAD-dependent oxidoreductase 0.92 56
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.24 RALBFv3_RS06910 glutamate synthase subunit beta 0.64 13
Ralstonia solanacearum UW163 0.60 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.24 UW163_RS06705 glutamate synthase subunit beta
Ralstonia solanacearum PSI07 0.60 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.24 RPSI07_RS10325 glutamate synthase subunit beta 0.64 28
Paraburkholderia graminis OAS925 0.60 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.24 ABIE53_003732 glutamate synthase (NADPH/NADH) small chain
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.56 Xcc-8004.43.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.78 40
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.25 QEN71_RS28005 glutamate synthase subunit beta 0.73 49
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.24 RR42_RS18985 glutamate synthase 0.77 20
Pseudomonas sp. SVBP6 0.60 COO64_RS05665 leuC 3-isopropylmalate dehydratase large subunit 0.67 COO64_RS13090 FAD-dependent oxidoreductase 0.78 74
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.25 H281DRAFT_05621 glutamate synthase (NADH) small subunit 0.46 44
Pseudomonas sp. DMC3 0.60 GFF785 3-isopropylmalate dehydratase large subunit 0.66 GFF3103 Glutamate synthase [NADPH] small chain 0.96 23
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS33915 isopropylmalate isomerase 0.24 BPHYT_RS17850 dihydropyrimidine dehydrogenase subunit A
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.66 Pf1N1B4_1533 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.83 23
Pseudomonas stutzeri RCH2 0.60 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.68 Psest_3710 glutamate synthase small subunit family protein, proteobacterial low > 67
Pseudomonas sp. RS175 0.59 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.67 PFR28_05016 Glutamate synthase [NADPH] small chain 0.43 31
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.64 HP15_483 oxidoreductase Fe-S binding subunit
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.66 PS417_02005 glutamate synthase 0.80 27
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.26 GFF1326 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 90
Variovorax sp. OAS795 0.59 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.24 ABID97_RS23220 glutamate synthase subunit beta
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.23 Ac3H11_4711 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.70 52
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.67 PfGW456L13_271 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 87
Pseudomonas orientalis W4I3 0.59 QF045_RS20740 3-isopropylmalate dehydratase large subunit 0.66 QF045_RS05065 FAD-dependent oxidoreductase 0.97 28
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.66 Pf6N2E2_3751 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.76 25
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.66 AO356_09370 glutamate synthase 0.75 41
Pseudomonas segetis P6 0.59 ACVTMO_RS15230 leuC 3-isopropylmalate dehydratase large subunit 0.66 ACVTMO_RS20980 FAD-dependent oxidoreductase 0.87 17
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.66 PFLU_RS02050 NAD(P)-binding protein low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.66 PFLU_RS02050 NAD(P)-binding protein low > 109
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_03948 3-isopropylmalate dehydratase large subunit 0.66 GEMAOFIL_00633 Glutamate synthase [NADPH] small chain low > 96
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.67 AO353_12520 glutamate synthase 0.78 41
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.67 Psyr_0412 glutamate synthase (NADPH) small subunit 0.70 39
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.67 Psyr_0412 glutamate synthase (NADPH) small subunit 0.76 42
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.67 OH686_10000 Glutamate synthase [NADPH] small chain 0.93 2
Variovorax sp. SCN45 0.59 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.22 GFF2453 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1) low > 127
Mycobacterium tuberculosis H37Rv 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.26 Rv3858c Probable NADH-dependent glutamate synthase (small subunit) GltD (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH)) (GLTS beta chain) (NADPH-GOGAT)
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.23 Dsui_1097 NADH/NADPH-dependent glutamate synthase small subunit
Xanthobacter sp. DMC5 0.58 GFF1852 3-isopropylmalate dehydratase large subunit 0.26 GFF2523 Glutamate synthase [NADPH] small chain
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.37 CCNA_03721 glutamate synthase (NADPH) small chain GltD low > 67
Caulobacter crescentus NA1000 0.58 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.37 CCNA_03721 glutamate synthase (NADPH) small chain GltD 0.87 61
Acinetobacter baumannii LAC-4 0.58 RR41_RS16900 3-isopropylmalate dehydratase large subunit 0.67 RR41_RS01600 FAD-dependent oxidoreductase low > 55
Dinoroseobacter shibae DFL-12 0.58 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.42 Dshi_0001 glutamate synthase, small subunit (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.57 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.68 MPMX26_02807 Glutamate synthase [NADPH] small chain low > 36
Phaeobacter inhibens DSM 17395 0.57 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.39 PGA1_c36090 glutamate synthase [NADPH] small chain 0.73 48
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.40 Ga0059261_1797 glutamate synthase small subunit family protein, proteobacterial low > 68
Sphingobium sp. HT1-2 0.56 GFF2630 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.41 GFF763 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.84 49
Pedobacter sp. GW460-11-11-14-LB5 0.56 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.25 CA265_RS08705 glutamate synthase 0.82 55
Mucilaginibacter yixingensis YX-36 DSM 26809 0.56 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.24 ABZR88_RS06910 glutamate synthase subunit beta
Bifidobacterium breve UCC2003 0.52 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.25 BBR_RS15260 glutamate synthase subunit beta low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.22 Echvi_1243 glutamate synthases, NADH/NADPH, small subunit 0.68 32
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS03110 3-isopropylmalate dehydratase large subunit 0.24 LRK53_RS00065 glutamate synthase subunit beta 0.74 41
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10335 3-isopropylmalate dehydratase large subunit 0.53 LRK54_RS10965 FAD-dependent oxidoreductase 0.88 13
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.53 LRK55_RS10670 FAD-dependent oxidoreductase low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.59 ABIE51_RS01315 FAD-dependent oxidoreductase 0.95 4
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.54 ABZR86_RS16800 FAD-dependent oxidoreductase 0.93 42
Cellulophaga baltica 18 0.52 M666_RS15060 3-isopropylmalate dehydratase large subunit 0.26 M666_RS01745 glutamate synthase subunit beta low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.35 A4249_RS16110 NAD(P)-dependent oxidoreductase 0.99 43
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.30 HMPREF1078_RS11400 NADPH-dependent glutamate synthase low > 61
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.24 OKGIIK_15205 Glutamate synthase 0.93 14
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.22 ABI39_RS20690 glutamate synthase subunit beta low > 72
Synechocystis sp000284455 PCC 6803 0.50 SGL_RS17620 3-isopropylmalate dehydratase large subunit 0.24 SGL_RS02895 glutamate synthase small subunit
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.26 DvMF_0938 putative oxidoreductase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.26 DVU2476 gltA glutamate synthase, small subunit (TIGR) low > 55

Not shown: 13 genomes with orthologs for Shew_3470 only; 0 genomes with orthologs for Shew_1031 only