Conservation of cofitness between Dshi_1938 and Dshi_0809 in Dinoroseobacter shibae DFL-12

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 1.0 Dshi_0809 GTP-binding protein LepA (RefSeq) 0.52 1
Phaeobacter inhibens DSM 17395 0.72 PGA1_c05650 tRNA pseudouridine synthase A 0.90 PGA1_c24090 GTP-binding protein LepA — —
Rhizobium sp. OAE497 0.53 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.76 ABIE40_RS01055 translation elongation factor 4 low > 107
Azospirillum sp. SherDot2 0.53 MPMX19_02005 tRNA pseudouridine synthase A 0.73 MPMX19_00092 Elongation factor 4 — —
Azospirillum brasilense Sp245 0.52 AZOBR_RS03570 tRNA pseudouridine synthase A 0.72 AZOBR_RS00860 elongation factor 4 — —
Agrobacterium fabrum C58 0.50 Atu0368 tRNA pseudouridine synthase I 0.75 Atu0241 GTP-binding protein LepA — —
Caulobacter crescentus NA1000 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.73 CCNA_01086 GTP-binding protein lepA low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.73 CCNA_01086 GTP-binding protein lepA low > 67
Sinorhizobium meliloti 1021 0.49 SMc01099 tRNA pseudouridine synthase A 0.77 SMc00349 GTP-binding protein LepA 0.86 3
Magnetospirillum magneticum AMB-1 0.49 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.73 AMB_RS19545 elongation factor 4 low > 64
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.72 Ga0059261_3979 elongation factor 4 low > 68
Rhodospirillum rubrum S1H 0.47 Rru_A3352 Pseudouridylate synthase (NCBI) 0.70 Rru_A3365 Small GTP-binding protein domain (NCBI) — —
Rhodopseudomonas palustris CGA009 0.47 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.71 TX73_001825 translation elongation factor 4 0.38 35
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.74 A4249_RS10390 translation elongation factor 4 low > 48
Bosea sp. OAE506 0.44 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.78 ABIE41_RS03260 translation elongation factor 4 0.55 35
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.57 QEN71_RS04600 translation elongation factor 4 low > 153
Ralstonia solanacearum UW163 0.36 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.56 UW163_RS11935 elongation factor 4 — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.56 RALBFv3_RS14470 elongation factor 4 — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.58 RPSI07_RS18990 elongation factor 4 low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.56 RS_RS05250 elongation factor 4 — —
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.56 ABZR87_RS10190 translation elongation factor 4 low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS14370 tRNA pseudouridine synthase A 0.56 RR42_RS14055 elongation factor 4 — —
Paraburkholderia graminis OAS925 0.34 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.58 ABIE53_003038 GTP-binding protein LepA 0.34 66
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.58 H281DRAFT_04360 GTP-binding protein LepA 0.32 102
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS33885 tRNA pseudouridine synthase A 0.58 BPHYT_RS14380 elongation factor 4 0.61 33
Pseudomonas sp. S08-1 0.33 OH686_04450 tRNA pseudouridine(38-40) synthase 0.58 OH686_20065 elongation factor 4 low > 80
Alteromonas macleodii MIT1002 0.33 MIT1002_02529 tRNA pseudouridine synthase A 0.58 MIT1002_02715 Elongation factor 4 low > 70
Variovorax sp. OAS795 0.32 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.58 ABID97_RS08350 translation elongation factor 4 low > 91
Dechlorosoma suillum PS 0.32 Dsui_3194 pseudouridylate synthase I 0.58 Dsui_2457 GTP-binding protein LepA low > 51
Shewanella amazonensis SB2B 0.32 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.58 Sama_0878 GTP-binding protein LepA (RefSeq) low > 62
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.59 Ac3H11_1569 Translation elongation factor LepA low > 79
Variovorax sp. SCN45 0.32 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.58 GFF3867 Translation elongation factor LepA 0.63 47
Rahnella sp. WP5 0.31 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.56 EX31_RS21825 elongation factor 4 low > 89
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS16485 tRNA pseudouridine synthase A 0.60 HSERO_RS09650 elongation factor 4 low > 78
Pseudomonas putida KT2440 0.31 PP_1994 tRNA pseudouridine (38-40)synthase 0.61 PP_1431 Elongation factor 4 — —
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.58 CSW01_12465 elongation factor 4 0.56 2
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.57 EX28DRAFT_0076 elongation factor 4 low > 76
Enterobacter sp. TBS_079 0.31 MPMX20_03253 tRNA pseudouridine synthase A 0.57 MPMX20_03440 Elongation factor 4 low > 85
Serratia liquefaciens MT49 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.57 IAI46_19560 elongation factor 4 low > 86
Castellaniella sp019104865 MT123 0.31 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.58 ABCV34_RS08335 translation elongation factor 4 — —
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.55 ABI39_RS20175 translation elongation factor 4 low > 72
Klebsiella michiganensis M5al 0.30 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.57 BWI76_RS21335 elongation factor 4 — —
Escherichia coli ECRC102 0.30 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.56 NIAGMN_19170 lepA translation elongation factor 4 — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.57 HER17_RS05805 translation elongation factor 4 low > 75
Shewanella loihica PV-4 0.30 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.58 Shew_1052 GTP-binding protein LepA (RefSeq) — —
Escherichia coli ECRC101 0.30 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.56 MCAODC_11930 lepA translation elongation factor 4 — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.56 ECOLIN_RS14540 translation elongation factor 4 low > 52
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.55 HMPREF1058_RS06410 elongation factor 4 low > 67
Escherichia coli ECOR38 0.30 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.56 HEPCGN_20545 lepA translation elongation factor 4 0.86 39
Erwinia tracheiphila SCR3 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.57 LU632_RS15395 lepA translation elongation factor 4 — —
Escherichia coli ECRC99 0.30 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.56 KEDOAH_06820 lepA translation elongation factor 4 — —
Escherichia coli ECRC101 0.30 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.56 OKFHMN_21400 lepA translation elongation factor 4 — —
Escherichia coli ECRC98 0.30 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.56 JDDGAC_25065 lepA translation elongation factor 4 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.56 GFF2477 Translation elongation factor LepA 0.76 47
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_1483 pseudouridylate synthase I 0.61 B158DRAFT_2184 GTP-binding protein LepA low > 40
Dickeya dianthicola ME23 0.30 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.57 DZA65_RS16910 elongation factor 4 low > 75
Dickeya dianthicola 67-19 0.30 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.57 HGI48_RS15830 elongation factor 4 0.43 56
Escherichia coli ECRC62 0.30 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.56 BNILDI_11875 lepA translation elongation factor 4 — —
Escherichia coli BL21 0.30 ECD_02243 tRNA pseudouridine(38-40) synthase 0.56 ECD_02463 back-translocating elongation factor EF4, GTPase — —
Escherichia coli BW25113 0.30 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.56 b2569 lepA GTP-binding protein LepA (NCBI) low > 76
Escherichia coli ECOR27 0.30 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.56 NOLOHH_13075 lepA translation elongation factor 4 — —
Dickeya dadantii 3937 0.30 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.57 DDA3937_RS15745 elongation factor 4 low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.56 OHPLBJKB_01138 Elongation factor 4 low > 73
Escherichia fergusonii Becca 0.30 EFB2_01540 tRNA pseudouridine synthase A 0.55 EFB2_01327 Elongation factor 4 low > 86
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.60 Pf1N1B4_895 Translation elongation factor LepA — —
Pseudomonas sp. RS175 0.29 PFR28_02817 tRNA pseudouridine synthase A 0.59 PFR28_03525 Elongation factor 4 — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.59 PfGW456L13_4842 Translation elongation factor LepA 0.52 40
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_21435 pseudouridine synthase 0.59 AO356_17485 elongation factor 4 0.38 24
Shewanella sp. ANA-3 0.29 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.60 Shewana3_3028 GTP-binding protein LepA (RefSeq) 0.80 4
Pantoea sp. MT58 0.29 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.56 IAI47_04870 elongation factor 4 low > 76
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.60 Pf6N2E2_5423 Translation elongation factor LepA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.59 GFF3343 Translation elongation factor LepA low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1662 tRNA pseudouridine synthase 0.59 Psyr_3954 GTP-binding protein LepA low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1662 tRNA pseudouridine synthase 0.59 Psyr_3954 GTP-binding protein LepA low > 86
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_20660 pseudouridine synthase 0.60 AO353_04520 elongation factor 4 low > 101
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.57 Xcc-8004.3676.1 Translation elongation factor LepA low > 74
Pseudomonas stutzeri RCH2 0.28 Psest_2585 pseudouridylate synthase I 0.58 Psest_3095 GTP-binding protein LepA — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.59 PFLU_RS05250 elongation factor 4 low > 109
Marinobacter adhaerens HP15 0.28 HP15_1829 tRNA pseudouridine synthase A 0.58 HP15_781 GTP-binding protein LepA low > 73
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.59 PFLU_RS05250 elongation factor 4 low > 109
Pseudomonas simiae WCS417 0.28 PS417_18565 pseudouridine synthase 0.59 PS417_05180 elongation factor 4 — —
Bacteroides ovatus ATCC 8483 0.27 BACOVA_05075 tRNA pseudouridine synthase A 0.55 BACOVA_02258 GTP-binding protein LepA low > 94
Acinetobacter radioresistens SK82 0.27 MPMX26_00352 tRNA pseudouridine synthase A 0.54 MPMX26_02159 Elongation factor 4 low > 36
Lysobacter sp. OAE881 0.27 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.56 ABIE51_RS13875 translation elongation factor 4 low > 62
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.56 ABZR86_RS07165 translation elongation factor 4 low > 74
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.57 HMPREF1078_RS09970 translation elongation factor 4 low > 61
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.55 OKGIIK_07885 Elongation factor 4 — —
Rhodanobacter denitrificans MT42 0.25 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.55 LRK55_RS16670 translation elongation factor 4 low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.55 LRK54_RS16955 translation elongation factor 4 low > 59
Bacteroides thetaiotaomicron VPI-5482 0.25 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.54 BT0632 GTP-binding protein, membrane GTPase lepA (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_1728 pseudouridylate synthase I 0.56 Echvi_4645 GTP-binding protein LepA 0.29 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_17725 tRNA pseudouridine synthase A 0.58 CA264_07150 elongation factor 4 0.56 4
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0911 truA tRNA pseudouridine synthase A (TIGR) 0.63 DVU0703 lepA GTP-binding protein LepA (TIGR) low > 55
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.56 HMPREF1181_RS16590 elongation factor 4 low > 56
Bifidobacterium breve UCC2003 0.23 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA 0.53 BBR_RS15230 elongation factor 4 low > 34
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.55 CA265_RS08955 elongation factor 4 low > 88
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_2207 truA tRNA pseudouridine synthase A 0.61 Synpcc7942_0479 lepA GTP-binding protein LepA — —
Fusobacterium nucleatum SB010 0.21 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.55 HUW76_04720 elongation factor 4 low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.55 ABZR88_RS09405 translation elongation factor 4 low > 71
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) 0.63 DvMF_2717 GTP-binding protein LepA (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.17 Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) 0.54 Rv2404c Probable GTP-binding protein LepA (GTP-binding elongation factor) — —

Not shown: 0 genomes with orthologs for Dshi_1938 only; 1 genomes with orthologs for Dshi_0809 only