Conservation of cofitness between BT2843 and BT4610 in Bacteroides thetaiotaomicron VPI-5482

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT2843 integrase (NCBI ptt file) 1.0 BT4610 RecA (NCBI ptt file) 0.57 2
Bacteroides ovatus ATCC 8483 0.87 BACOVA_02123 tyrosine recombinase XerD 0.93 BACOVA_05402 RecA protein low > 94
Bacteroides stercoris CC31F 0.79 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD 0.88 HMPREF1181_RS11910 recombinase RecA low > 56
Phocaeicola vulgatus CL09T03C04 0.75 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD 0.85 HMPREF1058_RS15965 recombinase RecA 0.53 38
Phocaeicola dorei CL03T12C01 0.75 ABI39_RS07000 site-specific tyrosine recombinase XerD 0.84 ABI39_RS11930 recombinase RecA low > 72
Parabacteroides merdae CL09T00C40 0.65 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD 0.79 HMPREF1078_RS00095 recombinase RecA low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.49 ABZR88_RS10220 site-specific tyrosine recombinase XerD 0.71 ABZR88_RS16740 recombinase RecA low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.48 CA264_00850 site-specific tyrosine recombinase XerD 0.70 CA264_19695 DNA recombination/repair protein RecA — —
Pedobacter sp. GW460-11-11-14-LB5 0.47 CA265_RS09520 site-specific tyrosine recombinase XerD 0.70 CA265_RS00600 recombinase RecA 0.39 12
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_1809 tyrosine recombinase XerD 0.65 Echvi_0044 protein RecA 0.41 3
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1721 Tyrosine recombinase XerD 0.60 PfGW456L13_4668 RecA protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_04365 recombinase XerD 0.60 AO353_16805 recombinase RecA 0.46 6
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_2265 tyrosine recombinase XerD 0.62 B158DRAFT_1531 protein RecA low > 40
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_3011 Tyrosine recombinase XerD 0.61 Pf1N1B4_5514 RecA protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3145 Tyrosine recombinase XerD 0.61 Pf6N2E2_2993 RecA protein — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.61 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.61 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas sp. RS175 0.34 PFR28_00331 Tyrosine recombinase XerD 0.60 PFR28_00472 Protein RecA low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_06385 recombinase XerD 0.61 AO356_05670 recombinase RecA 0.51 5
Pseudomonas simiae WCS417 0.34 PS417_22895 tyrosine recombinase XerD 0.61 PS417_05815 recombinase RecA 0.43 4
Pseudomonas putida KT2440 0.34 PP_1468 Tyrosine recombinase XerD 0.60 PP_1629 Protein RecA 0.33 8
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_1286 tyrosine recombinase XerD subunit 0.60 Psyr_1378 RecA protein 0.28 65
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_1286 tyrosine recombinase XerD subunit 0.60 Psyr_1378 RecA protein low > 86
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) 0.60 DVU1090 recA recA protein (TIGR) low > 55
Pseudomonas sp. S08-1 0.33 OH686_17750 tyrosine recombinase XerD 0.63 OH686_18205 protein RecA low > 80
Shewanella loihica PV-4 0.33 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.60 Shew_1215 recA recombinase A (RefSeq) low > 60
Shewanella amazonensis SB2B 0.32 Sama_2739 integrase/recombinase XerD (RefSeq) 0.60 Sama_1046 recA recombinase A (RefSeq) 0.46 6
Alteromonas macleodii MIT1002 0.32 MIT1002_00786 Tyrosine recombinase XerD 0.61 MIT1002_00955 Recombinase A low > 70
Dechlorosoma suillum PS 0.32 Dsui_1217 tyrosine recombinase XerD 0.62 Dsui_0707 protein RecA low > 51
Pseudomonas stutzeri RCH2 0.32 Psest_3129 tyrosine recombinase XerD 0.62 Psest_2872 protein RecA 0.16 60
Shewanella sp. ANA-3 0.31 Shewana3_3331 tyrosine recombinase XerD (RefSeq) 0.60 Shewana3_1126 recA recombinase A (RefSeq) 0.34 68
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_0359 tyrosine recombinase XerD (RefSeq) 0.60 DvMF_0876 recA recombinase A (RefSeq) low > 51
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_12250 site-specific tyrosine recombinase XerD 0.60 CSW01_02875 DNA recombination/repair protein RecA 0.64 30
Marinobacter adhaerens HP15 0.31 HP15_762 site-specific tyrosine recombinase XerD 0.61 HP15_1048 recombinase A low > 73
Rahnella sp. WP5 0.31 EX31_RS13480 site-specific tyrosine recombinase XerD 0.59 EX31_RS07800 recombinase RecA low > 89
Escherichia coli ECOR38 0.31 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.60 HEPCGN_19900 recA recombinase RecA low > 85
Serratia liquefaciens MT49 0.31 IAI46_20730 site-specific tyrosine recombinase XerD 0.59 IAI46_03840 recombinase RecA low > 86
Shewanella oneidensis MR-1 0.31 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.60 SO3430 recA recA protein (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF5461 Tyrosine recombinase XerD 0.57 GFF2500 RecA protein 0.44 24
Escherichia coli ECRC102 0.31 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD 0.60 NIAGMN_18475 recA recombinase RecA — —
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS04265 tyrosine recombinase XerD 0.61 HSERO_RS03270 protein RecA 0.50 4
Dickeya dianthicola 67-19 0.31 HGI48_RS03440 site-specific tyrosine recombinase XerD 0.60 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS03485 site-specific tyrosine recombinase XerD 0.60 DZA65_RS17450 recombinase RecA — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS16125 site-specific tyrosine recombinase XerD 0.60 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli ECRC98 0.30 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD 0.60 JDDGAC_24370 recA recombinase RecA — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS17890 site-specific tyrosine recombinase XerD 0.60 HER17_RS05045 recombinase RecA 0.85 1
Klebsiella michiganensis M5al 0.30 BWI76_RS23815 site-specific tyrosine recombinase XerD 0.59 BWI76_RS22180 recombinase RecA — —
Escherichia coli BW25113 0.30 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.60 b2699 recA recombinase A (NCBI) 0.47 12
Enterobacter sp. TBS_079 0.30 MPMX20_03753 Tyrosine recombinase XerD 0.59 MPMX20_03580 Protein RecA 0.50 6
Escherichia coli ECRC101 0.30 MCAODC_10090 xerD site-specific tyrosine recombinase XerD 0.60 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECOR27 0.30 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD 0.60 NOLOHH_12545 recA recombinase RecA — —
Escherichia fergusonii Becca 0.30 EFB2_01007 Tyrosine recombinase XerD 0.60 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC62 0.30 BNILDI_10025 xerD site-specific tyrosine recombinase XerD 0.60 BNILDI_11105 recA recombinase RecA — —
Acinetobacter radioresistens SK82 0.30 MPMX26_00169 Tyrosine recombinase XerD 0.63 MPMX26_01308 Protein RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00821 Tyrosine recombinase XerD 0.60 OHPLBJKB_01035 Protein RecA low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF2991 Tyrosine recombinase XerD 0.60 GFF4693 RecA protein — —
Escherichia coli ECRC99 0.30 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD 0.60 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECRC101 0.30 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD 0.60 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli BL21 0.30 ECD_02726 site-specific tyrosine recombinase 0.60 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.50 25
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2945 tyrosine recombinase XerD 0.60 EX28DRAFT_2785 protein RecA — —
Dickeya dadantii 3937 0.30 DDA3937_RS03300 site-specific tyrosine recombinase XerD 0.60 DDA3937_RS16245 recombinase RecA low > 74
Pantoea sp. MT58 0.30 IAI47_03820 site-specific tyrosine recombinase XerD 0.59 IAI47_04300 recombinase RecA 0.34 40
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.62 Xcc-8004.3111.1 RecA protein — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS12160 site-specific tyrosine recombinase XerD 0.60 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia solanacearum GMI1000 0.30 RS_RS12755 tyrosine recombinase XerD 0.60 RS_RS02760 DNA recombination/repair protein RecA — —
Bifidobacterium breve UCC2003 0.30 BBR_RS16755 site-specific tyrosine recombinase XerD 0.65 BBR_RS16530 recombinase RecA 0.71 15
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19880 site-specific tyrosine recombinase XerD 0.65 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Ralstonia solanacearum UW163 0.29 UW163_RS08485 site-specific tyrosine recombinase XerD 0.60 UW163_RS01625 recombinase RecA — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS15025 tyrosine recombinase XerC 0.59 ABZR86_RS00660 recombinase RecA 0.65 12
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS05140 site-specific tyrosine recombinase XerD 0.60 RALBFv3_RS12010 recombinase RecA low > 76
Lysobacter sp. OAE881 0.29 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.61 ABIE51_RS07800 recombinase RecA low > 62
Acidovorax sp. GW101-3H11 0.29 Ac3H11_302 Tyrosine recombinase XerD 0.59 Ac3H11_1255 RecA protein — —
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD 0.62 OKGIIK_03740 recA recombinase RecA low > 52
Erwinia tracheiphila SCR3 0.29 LU632_RS05975 xerD site-specific tyrosine recombinase XerD 0.60 LU632_RS15735 recA recombinase RecA — —
Rhodanobacter denitrificans MT42 0.29 LRK55_RS04515 site-specific tyrosine recombinase XerD 0.62 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS04735 site-specific tyrosine recombinase XerD 0.62 LRK54_RS14980 recombinase RecA low > 59
Rhizobium sp. OAE497 0.29 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.65 ABIE40_RS10320 recombinase RecA low > 107
Sinorhizobium meliloti 1021 0.29 SMc00691 site-specific tyrosine recombinase XerD 0.65 SMc00760 recombinase A 0.46 11
Rhodospirillum rubrum S1H 0.29 Rru_A3738 Phage integrase (NCBI) 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS03345 recombinase XerD 0.58 RR42_RS03080 recombinase RecA low > 128
Azospirillum brasilense Sp245 0.28 AZOBR_RS03240 recombinase XerD 0.63 AZOBR_RS11095 recombinase RecA 0.61 1
Rhodopseudomonas palustris CGA009 0.28 TX73_002625 site-specific tyrosine recombinase XerD 0.62 TX73_019940 recombinase RecA — —
Variovorax sp. OAS795 0.28 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.59 ABID97_RS02275 recombinase RecA 0.54 2
Dinoroseobacter shibae DFL-12 0.28 Dshi_1611 integrase family protein (RefSeq) 0.60 Dshi_1643 recA protein (RefSeq) 0.61 6
Variovorax sp. SCN45 0.27 GFF2772 Site-specific tyrosine recombinase XerD 0.59 GFF5390 RecA protein low > 127
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_04126 integrase/recombinase XerD 0.62 H281DRAFT_04208 RecA protein — —
Caulobacter crescentus NA1000 0.27 CCNA_03101 site-specific tyrosine recombinase XerD 0.60 CCNA_01141 RecA protein 0.54 19
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_03101 site-specific tyrosine recombinase XerD 0.60 CCNA_01141 RecA protein — —
Azospirillum sp. SherDot2 0.27 MPMX19_02643 Tyrosine recombinase XerD 0.64 MPMX19_00869 Protein RecA — —
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS15950 tyrosine recombinase XerD 0.62 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia graminis OAS925 0.27 ABIE53_003361 integrase/recombinase XerD 0.62 ABIE53_003448 recombination protein RecA 0.73 1
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS02755 site-specific tyrosine recombinase XerD 0.62 QEN71_RS02335 recombinase RecA — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c14060 tyrosine recombinase XerD 0.62 PGA1_c15260 protein recA (recombinase A) 0.46 4
Castellaniella sp019104865 MT123 0.27 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.62 ABCV34_RS04460 recombinase RecA low > 48
Agrobacterium fabrum C58 0.26 Atu3629 site-specific tyrosine recombinase XerD 0.65 Atu1874 RecA protein — —
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.60 ABZR87_RS07965 recombinase RecA 0.54 5
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS04165 site-specific tyrosine recombinase XerD 0.62 A4249_RS12615 recombinase RecA — —
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_3595 Site-specific recombinase XerD 0.66 Ga0059261_0204 protein RecA 0.45 3
Bosea sp. OAE506 0.26 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.60 ABIE41_RS13335 recombinase RecA 0.62 4
Synechococcus elongatus PCC 7942 0.12 Synpcc7942_B2651 xerC integrase/recombinase 0.58 Synpcc7942_0348 recA recombinase A — —

Not shown: 3 genomes with orthologs for BT2843 only; 1 genomes with orthologs for BT4610 only