Conservation of cofitness between BT1374 and BT3253 in Bacteroides thetaiotaomicron VPI-5482

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 1.0 BT3253 phosphoribosylamine--glycine ligase (NCBI ptt file) 0.87 4
Bacteroides ovatus ATCC 8483 0.97 BACOVA_00215 diaminopimelate decarboxylase 0.97 BACOVA_01348 phosphoribosylamine--glycine ligase 0.89 55
Bacteroides stercoris CC31F 0.88 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.84 HMPREF1181_RS01580 phosphoribosylamine--glycine ligase 0.86 50
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.80 HMPREF1058_RS10995 phosphoribosylamine--glycine ligase 0.87 4
Phocaeicola dorei CL03T12C01 0.84 ABI39_RS19950 diaminopimelate decarboxylase 0.79 ABI39_RS06055 phosphoribosylamine--glycine ligase 0.58 53
Parabacteroides merdae CL09T00C40 0.67 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.76 HMPREF1078_RS06805 phosphoribosylamine--glycine ligase 0.95 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.57 CA264_02390 diaminopimelate decarboxylase 0.55 CA264_20115 phosphoribosylamine--glycine ligase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS10180 diaminopimelate decarboxylase 0.60 ABZR88_RS01620 phosphoribosylamine--glycine ligase — —
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS09650 diaminopimelate decarboxylase 0.58 CA265_RS22605 phosphoribosylamine--glycine ligase — —
Alteromonas macleodii MIT1002 0.36 MIT1002_00160 Diaminopimelate decarboxylase 0.43 MIT1002_03961 Phosphoribosylamine--glycine ligase 0.73 62
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS17930 diaminopimelate decarboxylase 0.41 BPHYT_RS06405 phosphoribosylamine--glycine ligase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_05606 diaminopimelate decarboxylase 0.41 H281DRAFT_04521 phosphoribosylamine--glycine ligase — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS16945 diaminopimelate decarboxylase 0.37 AZOBR_RS04470 phosphoribosylamine--glycine ligase — —
Shewanella loihica PV-4 0.35 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.40 Shew_3413 phosphoribosylamine--glycine ligase (RefSeq) low > 60
Sinorhizobium meliloti 1021 0.35 SMc00723 diaminopimelate DAP decarboxylase 0.39 SMc00993 phosphoribosylamine--glycine ligase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS28080 diaminopimelate decarboxylase 0.42 QEN71_RS24400 phosphoribosylamine--glycine ligase 0.61 107
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.39 OKGIIK_13750 purD phosphoribosylamine--glycine ligase low > 52
Shewanella oneidensis MR-1 0.35 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.41 SO0441 purD phosphoribosylamine--glycine ligase (NCBI ptt file) 0.87 71
Paraburkholderia graminis OAS925 0.35 ABIE53_003749 diaminopimelate decarboxylase 0.41 ABIE53_001545 phosphoribosylamine--glycine ligase — —
Shewanella sp. ANA-3 0.35 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.42 Shewana3_0440 phosphoribosylamine--glycine ligase (RefSeq) 0.89 65
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS02640 diaminopimelate decarboxylase 0.41 ABZR87_RS15410 phosphoribosylamine--glycine ligase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS10250 diaminopimelate decarboxylase 0.41 RPSI07_RS13680 phosphoribosylamine--glycine ligase — —
Lysobacter sp. OAE881 0.35 ABIE51_RS13675 diaminopimelate decarboxylase 0.39 ABIE51_RS17770 phosphoribosylamine--glycine ligase low > 62
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS06990 diaminopimelate decarboxylase 0.41 RALBFv3_RS03545 phosphoribosylamine--glycine ligase — —
Ralstonia solanacearum UW163 0.35 UW163_RS06625 diaminopimelate decarboxylase 0.41 UW163_RS10125 phosphoribosylamine--glycine ligase — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS00950 diaminopimelate decarboxylase 0.40 HSERO_RS17755 phosphoribosylamine--glycine ligase — —
Rhodopseudomonas palustris CGA009 0.34 TX73_024635 diaminopimelate decarboxylase 0.39 TX73_005965 phosphoribosylamine--glycine ligase — —
Shewanella amazonensis SB2B 0.34 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.42 Sama_0394 phosphoribosylamine--glycine ligase (RefSeq) low > 62
Azospirillum sp. SherDot2 0.34 MPMX19_05819 Diaminopimelate decarboxylase 0.37 MPMX19_01630 Phosphoribosylamine--glycine ligase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS12130 diaminopimelate decarboxylase 0.42 ABZR86_RS13850 phosphoribosylamine--glycine ligase low > 74
Ralstonia solanacearum GMI1000 0.34 RS_RS14930 diaminopimelate decarboxylase 0.41 RS_RS10995 phosphoribosylamine--glycine ligase — —
Dechlorosoma suillum PS 0.34 Dsui_1182 diaminopimelate decarboxylase 0.41 Dsui_1596 phosphoribosylamine--glycine ligase — —
Agrobacterium fabrum C58 0.34 Atu3601 diaminopimelate decarboxylase 0.42 Atu0647 phosphoribosylamine--glycine ligase — —
Rhizobium sp. OAE497 0.34 ABIE40_RS17530 diaminopimelate decarboxylase 0.41 ABIE40_RS05430 phosphoribosylamine--glycine ligase 0.92 39
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_00635 diaminopimelate decarboxylase 0.46 CSW01_01415 phosphoribosylamine--glycine ligase low > 62
Rhodanobacter denitrificans MT42 0.33 LRK55_RS11215 diaminopimelate decarboxylase 0.40 LRK55_RS09805 phosphoribosylamine--glycine ligase low > 63
Dinoroseobacter shibae DFL-12 0.33 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.34 Dshi_2728 phosphoribosylamine--glycine ligase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02296 diaminopimelate decarboxylase 0.38 CCNA_00299 phosphoribosylamine--glycine ligase — —
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS11485 diaminopimelate decarboxylase 0.40 LRK54_RS10165 phosphoribosylamine--glycine ligase low > 59
Caulobacter crescentus NA1000 0.33 CCNA_02296 diaminopimelate decarboxylase 0.38 CCNA_00299 phosphoribosylamine--glycine ligase — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c03470 diaminopimelate decarboxylase LysA 0.37 PGA1_c23610 phosphoribosylamine--glycine ligase PurD — —
Marinobacter adhaerens HP15 0.33 HP15_247 diaminopimelate decarboxylase 0.46 HP15_3228 phosphoribosylamine-glycine ligase — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.35 Ga0059261_1441 phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS19050 diaminopimelate decarboxylase 0.39 RR42_RS04730 phosphoribosylamine--glycine ligase — —
Bosea sp. OAE506 0.33 ABIE41_RS08740 diaminopimelate decarboxylase 0.38 ABIE41_RS23160 phosphoribosylamine--glycine ligase — —
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.37 DvMF_1722 phosphoribosylamine--glycine ligase (RefSeq) low > 51
Magnetospirillum magneticum AMB-1 0.32 AMB_RS22725 diaminopimelate decarboxylase 0.39 AMB_RS01075 phosphoribosylamine--glycine ligase — —
Variovorax sp. SCN45 0.32 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.39 GFF302 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Rhodospirillum rubrum S1H 0.32 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.35 Rru_A0646 Phosphoribosylamine--glycine ligase (NCBI) — —
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.36 DVU0488 purD phosphoribosylamine--glycine ligase (TIGR) low > 55
Pseudomonas putida KT2440 0.32 PP_5227 diaminopimelate decarboxylase 0.46 PP_4823 Phosphoribosylamine--glycine ligase — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0182 diaminopimelate decarboxylase 0.45 Psyr_4407 phosphoribosylamine--glycine ligase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0182 diaminopimelate decarboxylase 0.45 Psyr_4407 phosphoribosylamine--glycine ligase — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12740 diaminopimelate decarboxylase 0.47 AO356_08230 phosphoribosylamine--glycine ligase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.47 Pf6N2E2_3520 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Variovorax sp. OAS795 0.32 ABID97_RS23305 diaminopimelate decarboxylase 0.38 ABID97_RS16735 phosphoribosylamine--glycine ligase — —
Pseudomonas sp. RS175 0.32 PFR28_04375 Diaminopimelate decarboxylase 0.47 PFR28_05213 Phosphoribosylamine--glycine ligase — —
Pseudomonas stutzeri RCH2 0.32 Psest_3764 diaminopimelate decarboxylase 0.45 Psest_1013 phosphoribosylamine--glycine ligase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.38 GFF4524 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.47 PfGW456L13_58 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.47 Pf1N1B4_1316 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_09035 diaminopimelate decarboxylase 0.47 AO353_13645 phosphoribosylamine--glycine ligase — —
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS29265 diaminopimelate decarboxylase 0.46 PFLU_RS03010 phosphoribosylamine--glycine ligase — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS29265 diaminopimelate decarboxylase 0.46 PFLU_RS03010 phosphoribosylamine--glycine ligase — —
Pseudomonas sp. S08-1 0.31 OH686_13800 diaminopimelate decarboxylase 0.45 OH686_07625 Phosphoribosylamine--glycine ligase — —
Pseudomonas simiae WCS417 0.31 PS417_27580 diaminopimelate decarboxylase 0.45 PS417_02935 phosphoribosylamine--glycine ligase — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS12685 diaminopimelate decarboxylase 0.43 ABCV34_RS02550 phosphoribosylamine--glycine ligase — —
Methanococcus maripaludis JJ 0.30 MMJJ_RS08170 diaminopimelate decarboxylase 0.21 MMJJ_RS03210 phosphoribosylamine--glycine ligase — —
Methanococcus maripaludis S2 0.30 MMP_RS06180 diaminopimelate decarboxylase 0.21 MMP_RS02095 phosphoribosylamine--glycine ligase — —
Acinetobacter radioresistens SK82 0.29 MPMX26_02232 Diaminopimelate decarboxylase 0.40 MPMX26_01140 Phosphoribosylamine--glycine ligase 0.85 8
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12545 diaminopimelate decarboxylase 0.38 A4249_RS09255 phosphoribosylamine--glycine ligase low > 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.55 Echvi_0167 phosphoribosylamine--glycine ligase — —
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.42 B158DRAFT_0167 phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Enterobacter sp. TBS_079 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.44 MPMX20_00225 Phosphoribosylamine--glycine ligase 0.71 54
Escherichia coli Nissle 1917 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase 0.44 ECOLIN_RS23095 phosphoribosylamine--glycine ligase low > 52
Enterobacter asburiae PDN3 0.19 EX28DRAFT_2916 diaminopimelate decarboxylase 0.43 EX28DRAFT_4544 phosphoribosylamine--glycine ligase (EC 6.3.4.13) low > 76
Escherichia fergusonii Becca 0.19 EFB2_01045 Diaminopimelate decarboxylase 0.44 EFB2_04605 Phosphoribosylamine--glycine ligase low > 86
Escherichia coli ECOR38 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.44 HEPCGN_11955 purD Phosphoribosylamine--glycine ligase low > 85
Escherichia coli ECRC62 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase 0.44 BNILDI_06060 purD Phosphoribosylamine--glycine ligase — —
Escherichia coli ECRC99 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.44 KEDOAH_14845 purD Phosphoribosylamine--glycine ligase — —
Escherichia coli ECRC98 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.44 JDDGAC_16940 purD Phosphoribosylamine--glycine ligase — —
Erwinia tracheiphila SCR3 0.19 LU632_RS06040 lysA diaminopimelate decarboxylase 0.45 LU632_RS01015 purD phosphoribosylamine--glycine ligase low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.44 OHPLBJKB_04044 Phosphoribosylamine--glycine ligase low > 73
Escherichia coli BW25113 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.44 b4005 purD phosphoribosylamine--glycine ligase (NCBI) 0.80 60
Escherichia coli BL21 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.44 ECD_03882 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase low > 60
Escherichia coli ECRC101 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.44 OKFHMN_13315 purD Phosphoribosylamine--glycine ligase — —
Escherichia coli ECRC101 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase 0.44 MCAODC_03815 purD Phosphoribosylamine--glycine ligase — —
Escherichia coli ECOR27 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.44 NOLOHH_05460 purD Phosphoribosylamine--glycine ligase low > 57
Escherichia coli ECRC102 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.44 NIAGMN_11065 purD Phosphoribosylamine--glycine ligase — —
Dickeya dianthicola ME23 0.19 DZA65_RS00505 type III PLP-dependent enzyme 0.45 DZA65_RS01255 phosphoribosylamine--glycine ligase low > 75
Dickeya dianthicola 67-19 0.19 HGI48_RS00505 type III PLP-dependent enzyme 0.45 HGI48_RS01210 phosphoribosylamine--glycine ligase low > 71
Dickeya dadantii 3937 0.19 DDA3937_RS20740 type III PLP-dependent enzyme 0.45 DDA3937_RS01215 phosphoribosylamine--glycine ligase low > 74
Acidovorax sp. GW101-3H11 0.18 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.41 Ac3H11_2421 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) — —
Rahnella sp. WP5 0.18 EX31_RS02420 type III PLP-dependent enzyme 0.45 EX31_RS16855 phosphoribosylamine--glycine ligase low > 89
Klebsiella michiganensis M5al 0.18 BWI76_RS23360 diaminopimelate decarboxylase 0.43 BWI76_RS01610 phosphoribosylamine--glycine ligase 0.73 55
Serratia liquefaciens MT49 0.18 IAI46_20520 diaminopimelate decarboxylase 0.45 IAI46_01360 phosphoribosylamine--glycine ligase low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS03710 diaminopimelate decarboxylase 0.45 HER17_RS20340 phosphoribosylamine--glycine ligase 0.91 44
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.44 GFF4187 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) low > 78
Mycobacterium tuberculosis H37Rv 0.17 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.28 Rv0772 Probable phosphoribosylamine--glycine ligase PurD (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) (5'-phosphoribosylglycinamide synthetase) — —
Pantoea sp. MT58 0.17 IAI47_03860 diaminopimelate decarboxylase 0.45 IAI47_18045 phosphoribosylamine--glycine ligase 0.81 69

Not shown: 0 genomes with orthologs for BT1374 only; 4 genomes with orthologs for BT3253 only