Conservation of cofitness between SO3462 and SO1861 in Shewanella oneidensis MR-1

107 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO3462 recN DNA repair protein RecN (NCBI ptt file) 1.0 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.51 8
Shewanella sp. ANA-3 0.97 Shewana3_1104 recombination and repair protein (RefSeq) 0.99 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Shewanella amazonensis SB2B 0.81 Sama_1026 recombination and repair protein (RefSeq) 0.79 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.67 8
Shewanella loihica PV-4 0.77 Shew_1196 recombination and repair protein (RefSeq) 0.82 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.62 7
Rahnella sp. WP5 0.55 EX31_RS21760 DNA repair protein RecN 0.57 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Escherichia coli BL21 0.55 ECD_02504 recombination and repair protein 0.58 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 61
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_04395 DNA repair protein RecN 0.58 CSW01_06140 excinuclease ABC subunit C 0.38 45
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4162 DNA repair protein RecN 0.58 GFF1700 Excinuclease ABC subunit C low > 78
Escherichia fergusonii Becca 0.55 EFB2_01277 DNA repair protein RecN 0.58 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECRC102 0.55 NIAGMN_18915 recN DNA repair protein RecN 0.58 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECRC99 0.55 KEDOAH_07075 recN DNA repair protein RecN 0.58 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR38 0.55 HEPCGN_20265 recN DNA repair protein RecN 0.58 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 88
Escherichia coli ECRC101 0.55 MCAODC_11670 recN DNA repair protein RecN 0.58 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 88
Escherichia coli ECRC100 0.55 OKFHMN_21145 recN DNA repair protein RecN 0.58 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01091 DNA repair protein RecN 0.58 OHPLBJKB_01816 UvrABC system protein C low > 74
Escherichia coli ECOR27 0.55 NOLOHH_12815 recN DNA repair protein RecN 0.58 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 76
Escherichia coli BW25113 0.55 b2616 recN recombination and repair protein (NCBI) 0.58 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.40 18
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14775 DNA repair protein RecN 0.58 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli ECRC62 0.55 BNILDI_11620 recN DNA repair protein RecN 0.58 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECRC98 0.55 JDDGAC_24810 recN DNA repair protein RecN 0.58 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 87
Erwinia amylovora T8 0.55 OLJFJH_10175 DNA repair protein RecN 0.57 OLJFJH_15790 excinuclease ABC subunit UvrC low > 58
Pantoea sp. MT58 0.54 IAI47_04810 DNA repair protein RecN 0.57 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS14700 DNA repair protein RecN 0.58 PagCFBP13505_RS04865 excinuclease ABC subunit UvrC low > 74
Klebsiella pneumoniae MKP103 0.54 KDGMDA_02250 DNA repair protein RecN 0.58 KDGMDA_25595 excinuclease ABC subunit UvrC low > 95
Dickeya dadantii 3937 0.54 DDA3937_RS04325 DNA repair protein RecN 0.57 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2719 DNA repair protein RecN 0.57 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Serratia liquefaciens MT49 0.54 IAI46_19635 DNA repair protein RecN 0.58 IAI46_09210 excinuclease ABC subunit UvrC 0.55 4
Klebsiella michiganensis M5al 0.54 BWI76_RS21560 DNA repair protein RecN 0.57 BWI76_RS18330 excinuclease ABC subunit C low > 92
Enterobacter sp. TBS_079 0.53 MPMX20_03486 DNA repair protein RecN 0.57 MPMX20_02838 UvrABC system protein C low > 85
Dickeya dianthicola 67-19 0.53 HGI48_RS04320 DNA repair protein RecN 0.57 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS04235 DNA repair protein RecN 0.57 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Pectobacterium carotovorum WPP14 0.52 HER17_RS17420 DNA repair protein RecN 0.57 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Erwinia tracheiphila SCR3 0.52 LU632_RS16985 recN DNA repair protein RecN 0.58 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Erwinia tracheiphila HP pepo 2.2 0.52 IJEDHG_26925 recN DNA repair protein RecN 0.58 IJEDHG_20740 uvrC excinuclease ABC subunit UvrC low > 61
Alteromonas macleodii MIT1002 0.45 MIT1002_01443 Recombination protein N 0.58 MIT1002_02153 Excinuclease ABC subunit C low > 70
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_5106 DNA repair protein RecN 0.53 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1178 DNA repair protein RecN 0.52 Pf1N1B4_5618 Excinuclease ABC subunit C 0.42 4
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3370 DNA repair protein RecN 0.51 Pf6N2E2_2021 Excinuclease ABC subunit C 0.69 4
Marinobacter adhaerens HP15 0.42 HP15_3084 DNA repair protein RecN 0.47 HP15_1568 excinuclease ABC subunit C 0.86 7
Pseudomonas sp. S08-1 0.42 OH686_17050 DNA repair protein RecN 0.51 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas sp. DMC3 0.42 GFF4971 DNA repair protein RecN 0.52 GFF3645 UvrABC system protein C low > 89
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29775 DNA repair protein RecN 0.53 IKLFDK_12970 excinuclease ABC subunit UvrC low > 100
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4197 DNA replication and repair protein RecN 0.51 Psyr_2896 Excinuclease ABC subunit C 0.42 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4197 DNA replication and repair protein RecN 0.51 Psyr_2896 Excinuclease ABC subunit C 0.38 62
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05660 DNA repair protein RecN 0.53 AO353_21835 excinuclease ABC subunit C 0.62 4
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07510 DNA repair protein RecN 0.52 AO356_00350 excinuclease ABC subunit C 0.81 3
Pseudomonas sp. RS175 0.41 PFR28_00071 DNA repair protein RecN 0.51 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas sp. SVBP6 0.41 COO64_RS15270 recN DNA repair protein RecN 0.52 COO64_RS13930 uvrC excinuclease ABC subunit UvrC low > 93
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04964 DNA repair protein RecN 0.52 GEMAOFIL_02233 UvrABC system protein C low > 93
Pseudomonas simiae WCS417 0.41 PS417_24070 recombination and repair protein 0.52 PS417_10725 excinuclease ABC subunit C 0.43 9
Pseudomonas fluorescens SBW25 0.40 PFLU_RS25910 DNA repair protein RecN 0.52 PFLU_RS10770 excinuclease ABC subunit UvrC 0.55 6
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS25910 DNA repair protein RecN 0.52 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_0962 DNA repair protein RecN 0.53 Psest_2259 excinuclease ABC, C subunit 0.73 4
Pseudomonas putida KT2440 0.39 PP_4729 factor used in recombination and DNA repair 0.51 PP_4098 UvrABC system protein C low > 96
Pseudomonas sp. BP01 0.39 JOY50_RS26735 recN DNA repair protein RecN 0.51 JOY50_RS06865 uvrC excinuclease ABC subunit UvrC low > 84
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0601 DNA replication and repair protein RecN 0.47 B158DRAFT_1273 Excinuclease ABC subunit C 0.64 10
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS03060 DNA repair protein 0.40 HSERO_RS09690 excinuclease ABC subunit C low > 78
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.43 Dsui_2470 excinuclease ABC, C subunit 0.83 10
Lysobacter sp. OAE881 0.35 ABIE51_RS11655 DNA repair protein RecN 0.44 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.68 6
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05665 DNA repair protein RecN 0.46 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.85 4
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3431.1 DNA repair protein RecN 0.44 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11400 DNA repair protein RecN 0.46 LRK53_RS09770 excinuclease ABC subunit UvrC 0.42 5
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01065 DNA repair protein RecN 0.41 ABZR87_RS10245 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS13275 DNA repair protein RecN 0.40 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05415 DNA repair protein RecN 0.40 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS08210 DNA repair protein RecN 0.40 UW163_RS11990 excinuclease ABC subunit UvrC — —
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07340 recN DNA repair protein RecN 0.46 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11890 DNA repair protein RecN 0.41 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Methylophilus sp. DMC18 0.33 GFF306 DNA repair protein RecN 0.47 GFF496 UvrABC system protein C low > 43
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.47 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.47 LRK55_RS00120 excinuclease ABC subunit UvrC 0.76 47
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3460 DNA repair protein RecN 0.35 Ac3H11_373 Excinuclease ABC subunit C low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.39 GFF2859 Excinuclease ABC subunit C low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.36 GFF3847 Excinuclease ABC subunit C — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS05910 DNA repair protein 0.41 RR42_RS14000 excinuclease ABC subunit C 0.69 4
Castellaniella sp019104865 MT123 0.30 ABCV34_RS07470 DNA repair protein RecN 0.40 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS02000 DNA repair protein RecN 0.24 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Acinetobacter baumannii LAC-4 0.28 RR41_RS17380 DNA repair protein RecN 0.44 RR41_RS17435 excinuclease ABC subunit UvrC low > 55
Acinetobacter radioresistens SK82 0.28 MPMX26_00239 DNA repair protein RecN 0.43 MPMX26_00228 UvrABC system protein C 0.61 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS06580 DNA repair protein RecN 0.22 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.33 SMc00602 excinuclease ABC subunit C 0.62 8
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.24 Echvi_0619 excinuclease ABC, C subunit 0.74 5
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.46 70
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.34 Atu1129 excinuclease ABC chain C 0.32 20
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10900 DNA repair protein RecN 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.25 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS18225 DNA repair protein RecN 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.74 1
Sphingobium sp. HT1-2 0.25 GFF2340 DNA repair protein RecN 0.32 GFF3465 Excinuclease ABC subunit C low > 95
Magnetospirillum magneticum AMB-1 0.25 AMB_RS19520 DNA repair protein RecN 0.34 AMB_RS19240 UvrABC system protein C — —
Azospirillum sp. SherDot2 0.25 MPMX19_01601 DNA repair protein RecN 0.34 MPMX19_01070 UvrABC system protein C low > 112
Azospirillum brasilense Sp245 0.25 AZOBR_RS12395 DNA repair protein RecN 0.36 AZOBR_RS08965 excinuclease ABC subunit C — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.34 Ga0059261_3186 Excinuclease ABC subunit C 0.43 6
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS14855 DNA repair protein RecN 0.22 CA265_RS18110 excinuclease ABC subunit C 0.83 2
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.24 BACOVA_01365 excinuclease ABC, C subunit 0.83 13
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.35 PGA1_c02880 uvrABC system protein C 0.56 3
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.35 Rru_A2220 Excinuclease ABC, C subunit (NCBI) — —
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.26 HUW76_06695 excinuclease ABC subunit UvrC low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_13235 DNA repair protein RecN 0.21 CA264_16350 excinuclease ABC subunit C 0.54 20
Rhodopseudomonas palustris CGA009 0.23 TX73_018240 DNA repair protein RecN 0.35 TX73_006010 excinuclease ABC subunit UvrC low > 86
Cellulophaga baltica 18 0.23 M666_RS17655 DNA repair protein RecN 0.23 M666_RS03735 excinuclease ABC subunit UvrC low > 67
Dinoroseobacter shibae DFL-12 0.23 Dshi_2413 DNA repair protein RecN (RefSeq) 0.35 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.51 4
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.32 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.31 CCNA_02975 excinuclease ABC subunit C 0.84 4
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.31 CCNA_02975 excinuclease ABC subunit C low > 67
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1779 recN DNA repair protein RecN 0.23 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.74 3
Synechocystis sp000284455 PCC 6803 0.19 SGL_RS11690 DNA repair protein RecN 0.24 SGL_RS07280 excinuclease ABC subunit UvrC low > 52
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.26 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU2463 recN DNA repair protein RecN (TIGR) 0.23 DVU0801 uvrC excinuclease ABC, C subunit (TIGR) low > 55

Not shown: 8 genomes with orthologs for SO3462 only; 4 genomes with orthologs for SO1861 only