Conservation of cofitness between SO4030 and SO1226 in Shewanella oneidensis MR-1

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 1.0 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.55 7
Shewanella sp. ANA-3 0.99 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.99 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.52 10
Shewanella amazonensis SB2B 0.90 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.89 Sama_0981 DNA repair protein RadA (RefSeq) 0.65 7
Shewanella loihica PV-4 0.89 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.39 Shew_2807 DNA repair protein RadA (RefSeq) 0.94 3
Escherichia coli ECOR38 0.80 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.78 HEPCGN_09195 radA DNA repair protein RadA low > 85
Escherichia coli ECRC62 0.80 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.78 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli BW25113 0.80 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.78 b4389 radA predicted repair protein (NCBI) 0.45 9
Escherichia coli ECOR27 0.80 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.78 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_03983 UvrABC system protein A 0.78 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC99 0.80 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.78 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.80 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.78 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia fergusonii Becca 0.80 EFB2_04533 UvrABC system protein A 0.78 EFB2_04057 DNA repair protein RadA low > 86
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_02080 UvrABC system protein A 0.72 CSW01_11870 DNA repair protein RadA 0.36 47
Escherichia coli ECRC98 0.80 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.78 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli Nissle 1917 0.80 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.78 ECOLIN_RS25190 DNA repair protein RadA low > 52
Escherichia coli ECRC102 0.80 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.78 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli BL21 0.80 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.78 ECD_04265 DNA repair protein 0.83 7
Escherichia coli ECRC101 0.80 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.78 OKFHMN_11195 radA DNA repair protein RadA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF1429 Excinuclease ABC subunit A 0.78 GFF1057 DNA repair protein RadA low > 78
Pantoea sp. MT58 0.80 IAI47_17815 excinuclease ABC subunit UvrA 0.77 IAI47_16345 DNA repair protein RadA low > 76
Serratia liquefaciens MT49 0.80 IAI46_22905 excinuclease ABC subunit UvrA 0.78 IAI46_02945 DNA repair protein RadA 0.43 33
Dickeya dadantii 3937 0.80 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.74 DDA3937_RS02420 DNA repair protein RadA low > 74
Rahnella sp. WP5 0.79 EX31_RS11990 excinuclease ABC subunit UvrA 0.77 EX31_RS04030 DNA repair protein RadA low > 89
Klebsiella michiganensis M5al 0.79 BWI76_RS01950 excinuclease ABC subunit A 0.78 BWI76_RS04165 DNA repair protein RadA low > 92
Pectobacterium carotovorum WPP14 0.79 HER17_RS03550 excinuclease ABC subunit UvrA 0.76 HER17_RS19085 DNA repair protein RadA low > 75
Enterobacter sp. TBS_079 0.79 MPMX20_00276 UvrABC system protein A 0.78 MPMX20_00694 DNA repair protein RadA low > 85
Dickeya dianthicola 67-19 0.79 HGI48_RS17610 excinuclease ABC subunit UvrA 0.74 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS18735 excinuclease ABC subunit UvrA 0.74 DZA65_RS02485 DNA repair protein RadA low > 75
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4246 excinuclease ABC, A subunit 0.78 EX28DRAFT_3597 DNA repair protein RadA low > 76
Erwinia tracheiphila SCR3 0.79 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.77 LU632_RS02550 radA DNA repair protein RadA low > 74
Alteromonas macleodii MIT1002 0.78 MIT1002_00179 Excinuclease ABC subunit A 0.75 MIT1002_02706 Lon protease 2 low > 70
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.61 B158DRAFT_0877 DNA replication and repair protein RadA 0.52 35
Pseudomonas sp. RS175 0.75 PFR28_03974 UvrABC system protein A 0.64 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas simiae WCS417 0.75 PS417_25395 excinuclease ABC subunit A 0.64 PS417_24305 DNA repair protein RadA 0.56 7
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_14785 ABC-ATPase UvrA 0.64 AO356_15680 DNA repair protein RadA 0.74 6
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_4888 Excinuclease ABC subunit A 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.44 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4520 Excinuclease ABC subunit A 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4520 Excinuclease ABC subunit A 0.64 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1283 Excinuclease ABC subunit A 0.64 PfGW456L13_1442 DNA repair protein RadA 0.30 47
Pseudomonas sp. S08-1 0.75 OH686_15495 excinuclease ABC subunit A 0.64 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.64 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas putida KT2440 0.75 PP_0483 excinuclease (uvrABC system protein A) 0.62 PP_4644 DNA repair enzyme — —
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_2611 Excinuclease ABC subunit A 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.47 9
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_06855 ABC-ATPase UvrA 0.64 AO353_13980 DNA repair protein RadA 0.65 6
Pseudomonas stutzeri RCH2 0.74 Psest_3576 excinuclease ABC, A subunit 0.63 Psest_3401 DNA repair protein RadA 0.62 7
Marinobacter adhaerens HP15 0.72 HP15_406 excinuclease ABC, ATPase subunit (A) 0.70 HP15_487 DNA repair protein RadA 0.87 3
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Dechlorosoma suillum PS 0.69 Dsui_1622 excinuclease ABC, A subunit 0.52 Dsui_2413 DNA repair protein RadA 0.54 28
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.58 ABZR86_RS08845 DNA repair protein RadA 0.77 14
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.59 OKGIIK_09580 radA DNA repair protein RadA low > 52
Rhodanobacter denitrificans MT42 0.69 LRK55_RS14925 excinuclease ABC subunit UvrA 0.59 LRK55_RS02280 DNA repair protein RadA low > 63
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS15210 excinuclease ABC subunit UvrA 0.59 LRK54_RS02525 DNA repair protein RadA low > 59
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS19810 excinuclease ABC subunit A 0.51 HSERO_RS10745 DNA repair protein RadA 0.57 11
Ralstonia solanacearum GMI1000 0.66 RS_RS02080 excinuclease ABC subunit UvrA 0.52 RS_RS06880 DNA repair protein RadA low > 80
Acinetobacter radioresistens SK82 0.66 MPMX26_02892 UvrABC system protein A 0.61 MPMX26_02235 DNA repair protein RadA low > 36
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.53 ABZR87_RS11670 DNA repair protein RadA low > 80
Ralstonia solanacearum PSI07 0.66 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.52 RPSI07_RS17270 DNA repair protein RadA low > 81
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS02970 excinuclease ABC subunit A 0.53 BPHYT_RS12235 DNA repair protein RadA low > 109
Ralstonia solanacearum UW163 0.66 UW163_RS02345 excinuclease ABC subunit UvrA 0.52 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.52 RALBFv3_RS00210 DNA repair protein RadA low > 76
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS01825 excinuclease ABC subunit UvrA 0.53 QEN71_RS06320 DNA repair protein RadA low > 153
Paraburkholderia graminis OAS925 0.66 ABIE53_000732 excinuclease ABC subunit A 0.53 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_01913 Excinuclease ABC subunit A 0.53 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS02145 excinuclease ABC subunit A 0.52 RR42_RS12030 DNA repair protein RadA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF2755 Excinuclease ABC subunit A 0.48 GFF1833 DNA repair protein RadA low > 90
Variovorax sp. SCN45 0.63 GFF4944 Excinuclease ABC subunit A 0.52 GFF5087 DNA repair protein RadA low > 127
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4387 Excinuclease ABC subunit A 0.51 Ac3H11_3371 DNA repair protein RadA 0.43 13
Variovorax sp. OAS795 0.63 ABID97_RS04340 excinuclease ABC subunit UvrA 0.52 ABID97_RS03770 DNA repair protein RadA low > 91
Rhodospirillum rubrum S1H 0.59 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.40 Rru_A0406 DNA repair protein RadA (NCBI) 0.68 2
Castellaniella sp019104865 MT123 0.59 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.51 ABCV34_RS02345 DNA repair protein RadA low > 48
Rhodopseudomonas palustris CGA009 0.59 TX73_014580 excinuclease ABC subunit UvrA 0.42 TX73_015980 DNA repair protein RadA low > 86
Dinoroseobacter shibae DFL-12 0.59 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.72 9
Azospirillum sp. SherDot2 0.58 MPMX19_01152 UvrABC system protein A 0.43 MPMX19_00904 DNA repair protein RadA 0.51 56
Caulobacter crescentus NA1000 0.57 CCNA_02673 excinuclease ABC subunit A 0.41 CCNA_01732 DNA repair protein RadA 0.77 10
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_02673 excinuclease ABC subunit A 0.41 CCNA_01732 DNA repair protein RadA low > 67
Phaeobacter inhibens DSM 17395 0.57 PGA1_c17370 uvrABC system protein A 0.41 PGA1_c10840 DNA repair protein RadA 0.53 10
Magnetospirillum magneticum AMB-1 0.57 AMB_RS12410 excinuclease ABC subunit UvrA 0.41 AMB_RS10555 DNA repair protein RadA low > 64
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_0674 excinuclease ABC, A subunit 0.39 Ga0059261_0751 DNA repair protein RadA 0.36 17
Bosea sp. OAE506 0.57 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.42 ABIE41_RS17800 DNA repair protein RadA 0.51 18
Rhizobium sp. OAE497 0.57 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.41 ABIE40_RS06280 DNA repair protein RadA low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS08575 excinuclease ABC subunit UvrA 0.40 A4249_RS03745 DNA repair protein RadA low > 48
Azospirillum brasilense Sp245 0.56 AZOBR_RS15370 excinuclease ABC subunit A 0.44 AZOBR_RS08320 DNA repair protein RadA 0.79 2
Agrobacterium fabrum C58 0.56 Atu1513 ABC excinuclease subunit A 0.41 Atu1077 DNA repair protein 0.44 19
Sinorhizobium meliloti 1021 0.56 SMc01235 excinuclease ABC subunit A 0.41 SMc00556 DNA repair protein RadA 0.68 7
Mycobacterium tuberculosis H37Rv 0.54 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.32 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.41 Synpcc7942_1452 radA DNA repair protein RadA 0.66 3
Bifidobacterium breve UCC2003 0.53 BBR_RS15510 excinuclease ABC subunit UvrA 0.36 BBR_RS18740 DNA repair protein RadA low > 34
Fusobacterium nucleatum SB010 0.52 HUW76_06660 excinuclease ABC subunit UvrA 0.33 HUW76_02270 DNA repair protein RadA low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_1138 excinuclease ABC, A subunit 0.42 Echvi_1031 DNA repair protein RadA 0.48 21
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_18100 ABC-ATPase UvrA 0.40 CA264_17125 DNA repair protein RadA low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.40 CA265_RS22660 DNA repair protein RadA 0.38 28
Bacteroides ovatus ATCC 8483 0.48 BACOVA_03703 excinuclease ABC, A subunit 0.42 BACOVA_03019 DNA repair protein RadA low > 94
Bacteroides thetaiotaomicron VPI-5482 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.42 BT2406 putative DNA repair protein (NCBI ptt file) 0.53 76
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.42 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Phocaeicola dorei CL03T12C01 0.47 ABI39_RS15330 excinuclease ABC subunit UvrA 0.42 ABI39_RS10420 DNA repair protein RadA low > 72
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.42 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.40 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.46 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.39 ABZR88_RS20495 DNA repair protein RadA low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.33 DVU1590 radA DNA repair protein RadA (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.33 DvMF_0471 DNA repair protein RadA (RefSeq) low > 51

Not shown: 2 genomes with orthologs for SO4030 only; 1 genomes with orthologs for SO1226 only