| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b4389 | radA | predicted repair protein (NCBI) | 1.0 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.45 | 12 |
| Escherichia coli BL21 | 1.00 | ECD_04265 | | DNA repair protein | 1.00 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.83 | 3 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS25190 | | DNA repair protein RadA | 1.00 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | low | > 52 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04057 | | DNA repair protein RadA | 1.00 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03672 | | DNA repair protein RadA | 1.00 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_14790 | radA | DNA repair protein RadA | 1.00 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_09045 | radA | DNA repair protein RadA | 1.00 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_08075 | radA | DNA repair protein RadA | 1.00 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_16960 | radA | DNA repair protein RadA | 1.00 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_11195 | radA | DNA repair protein RadA | 1.00 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_03520 | radA | DNA repair protein RadA | 1.00 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | low | > 57 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_01710 | radA | DNA repair protein RadA | 1.00 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_09195 | radA | DNA repair protein RadA | 1.00 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.98 | GFF1057 | | DNA repair protein RadA | 0.97 | GFF1429 | | Excinuclease ABC subunit A | low | > 78 |
| Enterobacter sp. TBS_079 | 0.97 | MPMX20_00694 | | DNA repair protein RadA | 0.96 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Klebsiella michiganensis M5al | 0.97 | BWI76_RS04165 | | DNA repair protein RadA | 0.96 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Enterobacter asburiae PDN3 | 0.97 | EX28DRAFT_3597 | | DNA repair protein RadA | 0.96 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.94 | LU632_RS02550 | radA | DNA repair protein RadA | 0.91 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Rahnella sp. WP5 | 0.94 | EX31_RS04030 | | DNA repair protein RadA | 0.91 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Serratia liquefaciens MT49 | 0.93 | IAI46_02945 | | DNA repair protein RadA | 0.92 | IAI46_22905 | | excinuclease ABC subunit UvrA | 0.43 | 11 |
| Pantoea sp. MT58 | 0.93 | IAI47_16345 | | DNA repair protein RadA | 0.91 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.90 | HER17_RS19085 | | DNA repair protein RadA | 0.91 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Dickeya dianthicola ME23 | 0.88 | DZA65_RS02485 | | DNA repair protein RadA | 0.91 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.87 | HGI48_RS02380 | | DNA repair protein RadA | 0.91 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Dickeya dadantii 3937 | 0.87 | DDA3937_RS02420 | | DNA repair protein RadA | 0.91 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.80 | CSW01_11870 | | DNA repair protein RadA | 0.82 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Shewanella oneidensis MR-1 | 0.77 | SO1226 | radA | DNA repair protein RadA (NCBI ptt file) | 0.82 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.55 | 7 |
| Shewanella sp. ANA-3 | 0.77 | Shewana3_1049 | | DNA repair protein RadA (RefSeq) | 0.82 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | 0.52 | 7 |
| Shewanella amazonensis SB2B | 0.75 | Sama_0981 | | DNA repair protein RadA (RefSeq) | 0.82 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.65 | 6 |
| Alteromonas macleodii MIT1002 | 0.73 | MIT1002_02706 | | Lon protease 2 | 0.80 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Marinobacter adhaerens HP15 | 0.69 | HP15_487 | | DNA repair protein RadA | 0.73 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | 0.87 | 3 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_4275 | | DNA replication and repair protein RadA | 0.78 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_4275 | | DNA replication and repair protein RadA | 0.78 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_1442 | | DNA repair protein RadA | 0.78 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.30 | 36 |
| Pseudomonas sp. RS175 | 0.64 | PFR28_03792 | | DNA repair protein RadA | 0.78 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS26230 | | DNA repair protein RadA | 0.78 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_15680 | | DNA repair protein RadA | 0.78 | AO356_14785 | | ABC-ATPase UvrA | 0.74 | 4 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS26230 | | DNA repair protein RadA | 0.78 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.19 | 61 |
| Pseudomonas fluorescens FW300-N1B4 | 0.64 | Pf1N1B4_2768 | | DNA repair protein RadA | 0.78 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.47 | 1 |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_5076 | | DNA repair protein RadA | 0.78 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.44 | 5 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_24305 | | DNA repair protein RadA | 0.78 | PS417_25395 | | excinuclease ABC subunit A | 0.56 | 1 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_16185 | | DNA repair protein RadA | 0.77 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.63 | AO353_13980 | | DNA repair protein RadA | 0.78 | AO353_06855 | | ABC-ATPase UvrA | 0.65 | 2 |
| Pseudomonas stutzeri RCH2 | 0.63 | Psest_3401 | | DNA repair protein RadA | 0.76 | Psest_3576 | | excinuclease ABC, A subunit | 0.62 | 2 |
| Pseudomonas putida KT2440 | 0.62 | PP_4644 | | DNA repair enzyme | 0.77 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Kangiella aquimarina DSM 16071 | 0.60 | B158DRAFT_0877 | | DNA replication and repair protein RadA | 0.77 | B158DRAFT_0885 | | excinuclease ABC, A subunit | 0.52 | 26 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.59 | Xcc-8004.3812.1 | | DNA repair protein RadA | 0.73 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_02235 | | DNA repair protein RadA | 0.68 | MPMX26_02892 | | UvrABC system protein A | 0.28 | 35 |
| Rhodanobacter sp. FW510-T8 | 0.58 | OKGIIK_09580 | radA | DNA repair protein RadA | 0.72 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.58 | LRK54_RS02525 | | DNA repair protein RadA | 0.72 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.58 | LRK55_RS02280 | | DNA repair protein RadA | 0.72 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS08845 | | DNA repair protein RadA | 0.73 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | 0.77 | 16 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS06320 | | DNA repair protein RadA | 0.68 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.55 | RR42_RS12030 | | DNA repair protein RadA | 0.67 | RR42_RS02145 | | excinuclease ABC subunit A | — | — |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS12235 | | DNA repair protein RadA | 0.68 | BPHYT_RS02970 | | excinuclease ABC subunit A | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS11670 | | DNA repair protein RadA | 0.68 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_00590 | | DNA replication and repair protein RadA | 0.68 | H281DRAFT_01913 | | Excinuclease ABC subunit A | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_002526 | | DNA repair protein RadA/Sms | 0.68 | ABIE53_000732 | | excinuclease ABC subunit A | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS10745 | | DNA repair protein RadA | 0.67 | HSERO_RS19810 | | excinuclease ABC subunit A | 0.57 | 3 |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS00210 | | DNA repair protein RadA | 0.67 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS13540 | | DNA repair protein RadA | 0.67 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS06880 | | DNA repair protein RadA | 0.68 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS17270 | | DNA repair protein RadA | 0.67 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS03770 | | DNA repair protein RadA | 0.65 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Variovorax sp. SCN45 | 0.52 | GFF5087 | | DNA repair protein RadA | 0.65 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Dechlorosoma suillum PS | 0.52 | Dsui_2413 | | DNA repair protein RadA | 0.72 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS02345 | | DNA repair protein RadA | 0.61 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3371 | | DNA repair protein RadA | 0.64 | Ac3H11_4387 | | Excinuclease ABC subunit A | 0.43 | 68 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.50 | GFF1833 | | DNA repair protein RadA | 0.66 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS08320 | | DNA repair protein RadA | 0.58 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.79 | 4 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS10555 | | DNA repair protein RadA | 0.58 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_00904 | | DNA repair protein RadA | 0.60 | MPMX19_01152 | | UvrABC system protein A | 0.51 | 14 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.41 | Echvi_1031 | | DNA repair protein RadA | 0.50 | Echvi_1138 | | excinuclease ABC, A subunit | 0.48 | 30 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS08395 | | DNA repair protein RadA | 0.48 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Rhodopseudomonas palustris CGA009 | 0.41 | TX73_015980 | | DNA repair protein RadA | 0.60 | TX73_014580 | | excinuclease ABC subunit UvrA | 0.42 | 56 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS17800 | | DNA repair protein RadA | 0.59 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | 0.51 | 20 |
| Caulobacter crescentus NA1000 | 0.41 | CCNA_01732 | | DNA repair protein RadA | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | 0.77 | 5 |
| Caulobacter crescentus NA1000 Δfur | 0.41 | CCNA_01732 | | DNA repair protein RadA | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c10840 | | DNA repair protein RadA | 0.58 | PGA1_c17370 | | uvrABC system protein A | 0.53 | 3 |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS06280 | | DNA repair protein RadA | 0.59 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | low | > 107 |
| Agrobacterium fabrum C58 | 0.41 | Atu1077 | | DNA repair protein | 0.58 | Atu1513 | | ABC excinuclease subunit A | 0.44 | 9 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS14715 | | DNA repair protein RadA | 0.48 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | 0.48 | 20 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS10420 | | DNA repair protein RadA | 0.48 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | low | > 72 |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_2129 | | DNA repair protein RadA (RefSeq) | 0.60 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | 0.72 | 2 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc00556 | | DNA repair protein RadA | 0.57 | SMc01235 | | excinuclease ABC subunit A | 0.68 | 2 |
| Bacteroides stercoris CC31F | 0.40 | HMPREF1181_RS00075 | | DNA repair protein RadA | 0.48 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.40 | BT2406 | | putative DNA repair protein (NCBI ptt file) | 0.49 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | 0.53 | 28 |
| Bacteroides ovatus ATCC 8483 | 0.40 | BACOVA_03019 | | DNA repair protein RadA | 0.49 | BACOVA_03703 | | excinuclease ABC, A subunit | low | > 94 |
| Synechococcus elongatus PCC 7942 | 0.40 | Synpcc7942_1452 | radA | DNA repair protein RadA | 0.54 | Synpcc7942_0848 | uvrA | excinuclease ABC subunit A | 0.66 | 25 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.39 | A4249_RS03745 | | DNA repair protein RadA | 0.60 | A4249_RS08575 | | excinuclease ABC subunit UvrA | low | > 48 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.39 | ABZR88_RS20495 | | DNA repair protein RadA | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | low | > 71 |
| Rhodospirillum rubrum S1H | 0.39 | Rru_A0406 | | DNA repair protein RadA (NCBI) | 0.60 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.39 | CA264_17125 | | DNA repair protein RadA | 0.50 | CA264_18100 | | ABC-ATPase UvrA | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.39 | CA265_RS22660 | | DNA repair protein RadA | 0.49 | CA265_RS25080 | | excinuclease ABC subunit A | 0.38 | 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_0751 | | DNA repair protein RadA | 0.59 | Ga0059261_0674 | | excinuclease ABC, A subunit | 0.36 | 15 |
| Shewanella loihica PV-4 | 0.37 | Shew_2807 | | DNA repair protein RadA (RefSeq) | 0.82 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.94 | 1 |
| Bifidobacterium breve UCC2003 | 0.35 | BBR_RS18740 | | DNA repair protein RadA | 0.55 | BBR_RS15510 | | excinuclease ABC subunit UvrA | low | > 34 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.35 | DVU1590 | radA | DNA repair protein RadA (TIGR) | 0.46 | DVU1987 | uvrA | excinuclease ABC, A subunit (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0471 | | DNA repair protein RadA (RefSeq) | 0.45 | DvMF_3050 | | excinuclease ABC, A subunit (RefSeq) | low | > 51 |
| Fusobacterium nucleatum SB010 | 0.32 | HUW76_02270 | | DNA repair protein RadA | 0.54 | HUW76_06660 | | excinuclease ABC subunit UvrA | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.32 | Rv3585 | | DNA repair protein RadA (DNA repair protein SMS) | 0.54 | Rv1638 | | Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA | low | > 58 |
Not shown: 1 genomes with orthologs for b4389 only; 2 genomes with orthologs for b4058 only