| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 1.0 | b2025 | hisF | imidazole glycerol phosphate synthase subunit HisF (NCBI) | 0.92 | 15 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | 0.99 | OHPLBJKB_01675 | | Imidazole glycerol phosphate synthase subunit HisF | low | > 73 |
| Escherichia coli BL21 | 1.00 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | 0.99 | ECD_01927 | | imidazole glycerol phosphate synthase, catalytic subunit with HisH | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | 0.99 | NOLOHH_15805 | hisF | Imidazole glycerol phosphate synthase subunit HisF | low | > 57 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | 0.99 | HEPCGN_03195 | hisF | Imidazole glycerol phosphate synthase subunit HisF | low | > 85 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | 1.00 | KEDOAH_03660 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | 1.00 | ECOLIN_RS11970 | | imidazole glycerol phosphate synthase subunit HisF | low | > 52 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | 1.00 | BNILDI_14715 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Escherichia fergusonii Becca | 1.00 | EFB2_01045 | | Diaminopimelate decarboxylase | 1.00 | EFB2_01831 | | Imidazole glycerol phosphate synthase subunit HisF | low | > 86 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | 1.00 | NIAGMN_22435 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Escherichia coli ECRC101 | 0.99 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | 1.00 | OKFHMN_24490 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | 1.00 | MCAODC_20450 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | 1.00 | JDDGAC_28600 | hisF | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Enterobacter sp. TBS_079 | 0.90 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.97 | MPMX20_03007 | | Imidazole glycerol phosphate synthase subunit HisF | 0.81 | 27 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.88 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.95 | GFF3907 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.96 | EX28DRAFT_0534 | | imidazoleglycerol phosphate synthase, cyclase subunit | 0.91 | 7 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.96 | BWI76_RS18950 | | imidazole glycerol phosphate synthase cyclase subunit | 0.80 | 24 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_20520 | | diaminopimelate decarboxylase | 0.95 | IAI46_08185 | | imidazole glycerol phosphate synthase subunit HisF | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.91 | HER17_RS12255 | | imidazole glycerol phosphate synthase subunit HisF | 0.95 | 13 |
| Erwinia tracheiphila SCR3 | 0.76 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.93 | LU632_RS08920 | hisF | imidazole glycerol phosphate synthase subunit HisF | 0.76 | 24 |
| Dickeya dadantii 3937 | 0.75 | DDA3937_RS17425 | | diaminopimelate decarboxylase | 0.93 | DDA3937_RS09710 | | imidazole glycerol phosphate synthase subunit HisF | 0.87 | 17 |
| Rahnella sp. WP5 | 0.75 | EX31_RS13275 | | diaminopimelate decarboxylase | 0.91 | EX31_RS11465 | | imidazole glycerol phosphate synthase subunit HisF | 0.94 | 30 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS18550 | | diaminopimelate decarboxylase | 0.92 | DZA65_RS10030 | | imidazole glycerol phosphate synthase subunit HisF | low | > 75 |
| Pantoea sp. MT58 | 0.75 | IAI47_03860 | | diaminopimelate decarboxylase | 0.90 | IAI47_07065 | | imidazole glycerol phosphate synthase subunit HisF | 0.95 | 20 |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS17485 | | diaminopimelate decarboxylase | 0.92 | HGI48_RS09720 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_3862 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.34 | Ac3H11_4733 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | — | — |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS35090 | | diaminopimelate decarboxylase | 0.41 | BPHYT_RS17680 | | imidazole glycerol phosphate synthase subunit HisF | low | > 109 |
| Pseudomonas putida KT2440 | 0.57 | PP_2077 | | diaminopimelate decarboxylase | 0.41 | PP_0293 | | Imidazole glycerol phosphate synthase subunit HisF | low | > 96 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_1295 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.41 | Echvi_2516 | | imidazoleglycerol phosphate synthase, cyclase subunit | 0.86 | 33 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU2566 | lysA-2 | diaminopimelate decarboxylase (TIGR) | 0.37 | DVU0286 | hisF | imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) | low | > 55 |
| Lysobacter sp. OAE881 | 0.26 | ABIE51_RS13675 | | diaminopimelate decarboxylase | 0.65 | ABIE51_RS13300 | | imidazole glycerol phosphate synthase subunit HisF | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.25 | DvMF_1010 | | diaminopimelate decarboxylase (RefSeq) | 0.36 | DvMF_2304 | | imidazole glycerol phosphate synthase subunit HisF (RefSeq) | 0.27 | 32 |
| Rhodanobacter denitrificans MT42 | 0.25 | LRK55_RS11215 | | diaminopimelate decarboxylase | 0.64 | LRK55_RS01360 | | imidazole glycerol phosphate synthase subunit HisF | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.25 | LRK54_RS11485 | | diaminopimelate decarboxylase | 0.65 | LRK54_RS01580 | | imidazole glycerol phosphate synthase subunit HisF | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.24 | ABZR86_RS12130 | | diaminopimelate decarboxylase | 0.63 | ABZR86_RS06705 | | imidazole glycerol phosphate synthase subunit HisF | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.24 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | 0.64 | OKGIIK_04975 | hisF | imidazole glycerol phosphate synthase subunit HisF | low | > 52 |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_02296 | | diaminopimelate decarboxylase | 0.41 | CCNA_03853 | | imidazole glycerol phosphate synthase, cyclase subunit | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS12545 | | diaminopimelate decarboxylase | 0.57 | A4249_RS10715 | | imidazole glycerol phosphate synthase subunit HisF | 1.00 | 4 |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_02296 | | diaminopimelate decarboxylase | 0.41 | CCNA_03853 | | imidazole glycerol phosphate synthase, cyclase subunit | — | — |
| Bosea sp. OAE506 | 0.23 | ABIE41_RS08740 | | diaminopimelate decarboxylase | 0.34 | ABIE41_RS03810 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_024635 | | diaminopimelate decarboxylase | 0.33 | TX73_001625 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.35 | Ga0059261_1048 | | imidazoleglycerol phosphate synthase, cyclase subunit | 0.98 | 17 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | 0.34 | PGA1_c09240 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.22 | AO353_09035 | | diaminopimelate decarboxylase | 0.40 | AO353_12090 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_05819 | | Diaminopimelate decarboxylase | 0.40 | MPMX19_02542 | | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Rhodospirillum rubrum S1H | 0.22 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | 0.36 | Rru_A3594 | | Histidine biosynthesis protein HisF (NCBI) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.21 | Psyr_0182 | | diaminopimelate decarboxylase | 0.40 | Psyr_4893 | | imidazole glycerol phosphate synthase subunit hisF | — | — |
| Pseudomonas sp. RS175 | 0.21 | PFR28_04375 | | Diaminopimelate decarboxylase | 0.40 | PFR28_04933 | | Imidazole glycerol phosphate synthase subunit HisF | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.21 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.40 | Pf1N1B4_1623 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.21 | Psyr_0182 | | diaminopimelate decarboxylase | 0.40 | Psyr_4893 | | imidazole glycerol phosphate synthase subunit hisF | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.21 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.40 | PfGW456L13_358 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | 0.84 | 34 |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS22725 | | diaminopimelate decarboxylase | 0.37 | AMB_RS22925 | | imidazole glycerol phosphate synthase cyclase subunit | — | — |
| Dechlorosoma suillum PS | 0.21 | Dsui_1182 | | diaminopimelate decarboxylase | 0.38 | Dsui_1418 | | imidazoleglycerol phosphate synthase, cyclase subunit | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | 0.37 | Dshi_2576 | | imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq) | — | — |
| Pseudomonas simiae WCS417 | 0.21 | PS417_27580 | | diaminopimelate decarboxylase | 0.40 | PS417_01580 | | imidazole glycerol phosphate synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.40 | PFLU_RS01625 | | imidazole glycerol phosphate synthase subunit HisF | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.40 | Pf6N2E2_3838 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.40 | PFLU_RS01625 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.20 | AO356_12740 | | diaminopimelate decarboxylase | 0.40 | AO356_09795 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS19050 | | diaminopimelate decarboxylase | 0.42 | RR42_RS18885 | | imidazole glycerol phosphate synthase | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS16945 | | diaminopimelate decarboxylase | 0.40 | AZOBR_RS01685 | | imidazole glycerol phosphate synthase | — | — |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_3764 | | diaminopimelate decarboxylase | 0.42 | Psest_0156 | | imidazoleglycerol phosphate synthase, cyclase subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.42 | ABZR87_RS02470 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Pseudomonas sp. S08-1 | 0.20 | OH686_13800 | | diaminopimelate decarboxylase | 0.42 | OH686_14595 | | Imidazole glycerol phosphate synthase cyclase subunit | low | > 80 |
| Rhizobium sp. OAE497 | 0.20 | ABIE40_RS17530 | | diaminopimelate decarboxylase | 0.36 | ABIE40_RS19440 | | imidazole glycerol phosphate synthase subunit HisF | 0.97 | 9 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS10250 | | diaminopimelate decarboxylase | 0.42 | RPSI07_RS10420 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Agrobacterium fabrum C58 | 0.20 | Atu3601 | | diaminopimelate decarboxylase | 0.37 | Atu0039 | | imidazoleglycerol-phosphate synthase cyclase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.20 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | 0.43 | RALBFv3_RS06815 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS14930 | | diaminopimelate decarboxylase | 0.42 | RS_RS14760 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Shewanella amazonensis SB2B | 0.20 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.77 | Sama_1947 | | imidazole glycerol phosphate synthase subunit HisF (RefSeq) | 0.95 | 27 |
| Ralstonia solanacearum UW163 | 0.20 | UW163_RS06625 | | diaminopimelate decarboxylase | 0.43 | UW163_RS06800 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.19 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.38 | GFF1309 | | Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) | — | — |
| Marinobacter adhaerens HP15 | 0.19 | HP15_247 | | diaminopimelate decarboxylase | 0.39 | HP15_3009 | | protein containing histidine biosynthesis, HisF domain | — | — |
| Shewanella sp. ANA-3 | 0.19 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.75 | Shewana3_1848 | | imidazole glycerol phosphate synthase subunit HisF (RefSeq) | 0.94 | 26 |
| Methanococcus maripaludis JJ | 0.19 | MMJJ_RS08170 | | diaminopimelate decarboxylase | 0.38 | MMJJ_RS05490 | | imidazole glycerol phosphate synthase subunit HisF | low | > 28 |
| Sinorhizobium meliloti 1021 | 0.19 | SMc00723 | | diaminopimelate DAP decarboxylase | 0.36 | SMc02569 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Methanococcus maripaludis S2 | 0.19 | MMP_RS06180 | | diaminopimelate decarboxylase | 0.38 | MMP_RS08865 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Paraburkholderia graminis OAS925 | 0.19 | ABIE53_003749 | | diaminopimelate decarboxylase | 0.41 | ABIE53_003695 | | cyclase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.40 | QEN71_RS27835 | | imidazole glycerol phosphate synthase subunit HisF | 0.92 | 13 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_02232 | | Diaminopimelate decarboxylase | 0.40 | MPMX26_02854 | | Imidazole glycerol phosphate synthase subunit HisF | low | > 36 |
| Shewanella oneidensis MR-1 | 0.19 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.75 | SO2068 | hisF | hisF protein (cyclase) (NCBI ptt file) | 0.98 | 9 |
| Herbaspirillum seropedicae SmR1 | 0.19 | HSERO_RS00950 | | diaminopimelate decarboxylase | 0.39 | HSERO_RS20315 | | imidazole glycerol phosphate synthase | — | — |
| Variovorax sp. SCN45 | 0.18 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.39 | GFF5357 | | Imidazole glycerol phosphate synthase cyclase subunit | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_00635 | | diaminopimelate decarboxylase | 0.87 | CSW01_05775 | | imidazole glycerol phosphate synthase cyclase subunit | low | > 62 |
| Shewanella loihica PV-4 | 0.18 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.75 | Shew_2203 | | imidazole glycerol phosphate synthase subunit HisF (RefSeq) | 0.97 | 24 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.18 | CA264_02390 | | diaminopimelate decarboxylase | 0.47 | CA264_05110 | | imidazole glycerol phosphate synthase cyclase subunit | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.18 | ABCV34_RS12685 | | diaminopimelate decarboxylase | 0.37 | ABCV34_RS11250 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.18 | H281DRAFT_05606 | | diaminopimelate decarboxylase | 0.41 | H281DRAFT_05659 | | imidazole glycerol phosphate synthase subunit hisF | — | — |
| Bacteroides stercoris CC31F | 0.18 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.42 | HMPREF1181_RS11070 | | imidazole glycerol phosphate synthase subunit HisF | 0.97 | 12 |
| Variovorax sp. OAS795 | 0.18 | ABID97_RS23305 | | diaminopimelate decarboxylase | 0.41 | ABID97_RS23105 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Parabacteroides merdae CL09T00C40 | 0.18 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.43 | HMPREF1078_RS13565 | | imidazole glycerol phosphate synthase subunit HisF | 0.97 | 12 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.44 | BT1378 | | imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) | 0.50 | 51 |
| Phocaeicola dorei CL03T12C01 | 0.17 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.46 | ABI39_RS19930 | | imidazole glycerol phosphate synthase subunit HisF | 0.58 | 54 |
| Phocaeicola vulgatus CL09T03C04 | 0.17 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | 0.46 | HMPREF1058_RS06175 | | imidazole glycerol phosphate synthase subunit HisF | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.44 | BACOVA_00219 | | imidazoleglycerol phosphate synthase, cyclase subunit | 0.95 | 16 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.16 | ABZR88_RS10180 | | diaminopimelate decarboxylase | 0.43 | ABZR88_RS06855 | | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.76 | MIT1002_02638 | | Imidazole glycerol phosphate synthase subunit HisF | 0.82 | 29 |
| Synechococcus elongatus PCC 7942 | 0.15 | Synpcc7942_0262 | lysA | diaminopimelate decarboxylase | 0.37 | Synpcc7942_2087 | hisF | imidazole glycerol phosphate synthase subunit HisF | — | — |
| Mycobacterium tuberculosis H37Rv | 0.15 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | 0.37 | Rv1605 | | Probable cyclase HisF | — | — |
Not shown: 1 genomes with orthologs for b2838 only; 3 genomes with orthologs for b2025 only