Homologs of OHPLBJKB_02552 from Escherichia coli HS(pFamp)R (ATCC 700891)

Transcription-repair-coupling factor
SEED: Transcription-repair coupling factor
KEGG: transcription-repair coupling factor (superfamily II helicase)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02552 Transcription-repair-coupling factor cofit 100 100
o Escherichia coli ECOR27 NOLOHH_20995 mfd transcription-repair coupling factor cofit 100 100
o Escherichia coli ECRC62 BNILDI_19160 mfd transcription-repair coupling factor sig. 100 100
o Escherichia coli ECRC101 OKFHMN_03470 mfd transcription-repair coupling factor sig. 100 100
o Escherichia coli ECRC101 MCAODC_22830 mfd transcription-repair coupling factor strong 100 100
o Escherichia coli ECRC102 NIAGMN_24360 mfd transcription-repair coupling factor sig. 100 100
o Escherichia coli ECRC98 JDDGAC_07130 mfd transcription-repair coupling factor no data 100 100
o Escherichia coli ECRC99 KEDOAH_24285 mfd transcription-repair coupling factor no data 100 100
o Escherichia coli ECOR38 HEPCGN_24015 mfd transcription-repair coupling factor strong 100 100
o Escherichia fergusonii Becca EFB2_02861 Transcription-repair-coupling factor insig. 99 100
o Escherichia coli BW25113 b1114 mfd transcription-repair coupling factor (NCBI) strong 100 99
o Escherichia coli BL21 ECD_01110 transcription-repair coupling factor sig. 99 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3397 Transcription-repair coupling factor strong 95 99
o Klebsiella michiganensis M5al BWI76_RS11205 transcription-repair coupling factor strong 92 99
o Enterobacter asburiae PDN3 EX28DRAFT_1816 transcription-repair coupling factor (mfd) cofit 91 99
o Enterobacter sp. TBS_079 MPMX20_01795 Transcription-repair-coupling factor strong 91 99
o Pectobacterium carotovorum WPP14 HER17_RS08775 transcription-repair coupling factor insig. 84 99
o Erwinia tracheiphila SCR3 LU632_RS14730 mfd transcription-repair coupling factor insig. 83 98
o Pantoea sp. MT58 IAI47_11975 transcription-repair coupling factor insig. 82 98
o Serratia liquefaciens MT49 IAI46_10320 transcription-repair coupling factor insig. 82 98
o Dickeya dadantii 3937 DDA3937_RS13000 transcription-repair coupling factor cofit 81 99
o Rahnella sp. WP5 EX31_RS24520 transcription-repair coupling factor insig. 80 99
o Dickeya dianthicola 67-19 HGI48_RS13065 transcription-repair coupling factor cofit 81 99
o Dickeya dianthicola ME23 DZA65_RS13530 transcription-repair coupling factor cofit 80 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_09445 transcription-repair coupling factor insig. 65 98
o Alteromonas macleodii MIT1002 MIT1002_01646 Transcription-repair-coupling factor cofit 57 97
o Shewanella oneidensis MR-1 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) strong 58 98
o Shewanella loihica PV-4 Shew_1630 transcription-repair coupling factor (RefSeq) strong 57 97
o Shewanella sp. ANA-3 Shewana3_2289 transcription-repair coupling factor (RefSeq) sig. 57 98
o Shewanella amazonensis SB2B Sama_1330 transcription-repair coupling factor (RefSeq) strong 58 95
o Pseudomonas stutzeri RCH2 Psest_1653 transcription-repair coupling factor (mfd) strong 57 98
o Pseudomonas sp. S08-1 OH686_21990 transcription-repair coupling factor cofit 58 96
o Pseudomonas syringae pv. syringae B728a Psyr_1896 transcription-repair coupling factor insig. 56 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1896 transcription-repair coupling factor insig. 56 97
o Pseudomonas fluorescens FW300-N2E3 AO353_00435 transcription-repair coupling factor strong 57 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3916 Transcription-repair coupling factor strong 56 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4027 Transcription-repair coupling factor strong 56 97
o Pseudomonas fluorescens FW300-N2C3 AO356_02270 transcription-repair coupling factor strong 56 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2278 Transcription-repair coupling factor strong 56 97
o Pseudomonas fluorescens SBW25 PFLU_RS07710 transcription-repair coupling factor cofit 56 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS07710 transcription-repair coupling factor sig. 56 97
o Pseudomonas simiae WCS417 PS417_07635 transcription-repair coupling factor strong 56 97
o Pseudomonas sp. RS175 PFR28_01123 Transcription-repair-coupling factor sig. 56 97
o Pseudomonas putida KT2440 PP_2148 transcription-repair coupling factor strong 56 96
o Marinobacter adhaerens HP15 HP15_2257 transcription-repair-coupling factor strong 54 98
o Kangiella aquimarina DSM 16071 B158DRAFT_1800 transcription-repair coupling factor strong 55 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS21210 transcription-repair coupling factor strong 56 96
o Rhodanobacter denitrificans MT42 LRK55_RS01815 transcription-repair coupling factor strong 54 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02040 transcription-repair coupling factor strong 55 95
o Lysobacter sp. OAE881 ABIE51_RS14320 transcription-repair coupling factor insig. 53 95
o Rhodanobacter sp. FW510-T8 OKGIIK_09105 mfd transcription-repair coupling factor cofit 51 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1775.1 Transcription-repair coupling factor insig. 53 96
o Acinetobacter radioresistens SK82 MPMX26_01319 Transcription-repair-coupling factor insig. 51 97
o Paraburkholderia graminis OAS925 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) strong 50 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS22060 transcription-repair coupling factor insig. 50 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS13240 transcription-repair coupling factor sig. 50 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00880 transcription-repair coupling factor sig. 50 97
o Ralstonia solanacearum GMI1000 RS_RS08275 transcription-repair coupling factor sig. 50 97
o Herbaspirillum seropedicae SmR1 HSERO_RS15180 transcription-repair coupling factor strong 51 92
o Burkholderia phytofirmans PsJN BPHYT_RS09290 helicase sig. 50 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01445 transcription-repair coupling factor sig. 50 97
o Ralstonia solanacearum UW163 UW163_RS14755 transcription-repair coupling factor insig. 50 97
o Variovorax sp. OAS795 ABID97_RS17285 transcription-repair coupling factor sig. 50 97
o Variovorax sp. SCN45 GFF412 Transcription-repair coupling factor insig. 50 96
o Ralstonia solanacearum PSI07 RPSI07_RS16040 transcription-repair coupling factor sig. 50 97
o Acidovorax sp. GW101-3H11 Ac3H11_328 Transcription-repair coupling factor sig. 48 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4934 Transcription-repair coupling factor cofit 49 96
o Cupriavidus basilensis FW507-4G11 RR42_RS07845 transcription-repair coupling factor strong 48 98
o Dechlorosoma suillum PS Dsui_2385 transcription-repair coupling factor Mfd strong 50 97
o Castellaniella sp019104865 MT123 ABCV34_RS08660 transcription-repair coupling factor cofit 52 93
o Magnetospirillum magneticum AMB-1 AMB_RS12390 transcription-repair coupling factor insig. 40 95
o Rhodopseudomonas palustris CGA009 TX73_013805 transcription-repair coupling factor insig. 40 93
o Azospirillum sp. SherDot2 MPMX19_00876 Transcription-repair-coupling factor cofit 39 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04775 transcription-repair coupling factor cofit 41 93
o Bosea sp. OAE506 ABIE41_RS15825 transcription-repair coupling factor cofit 40 95
o Rhodospirillum rubrum S1H Rru_A1726 Transcription-repair coupling factor (NCBI) sig. 40 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0960 transcription-repair coupling factor (mfd) sig. 40 96
o Sinorhizobium meliloti 1021 SMc04450 transcription-repair coupling factor sig. 39 97
o Caulobacter crescentus NA1000 CCNA_01920 transcription-repair coupling factor Mfd strong 40 93
o Caulobacter crescentus NA1000 Δfur CCNA_01920 transcription-repair coupling factor Mfd cofit 40 93
o Phaeobacter inhibens DSM 17395 PGA1_c14920 transcription-repair-coupling factor Mfd strong 39 93
o Dinoroseobacter shibae DFL-12 Dshi_1561 transcription-repair coupling factor (RefSeq) sig. 38 96
o Agrobacterium fabrum C58 Atu1778 transcription-repair coupling factor sig. 38 97
o Rhizobium sp. OAE497 ABIE40_RS09310 transcription-repair coupling factor insig. 38 97
o Bifidobacterium breve UCC2003 BBR_RS14115 transcription-repair coupling factor strong 38 90
o Desulfovibrio vulgaris Hildenborough JW710 DVU1903 mfd transcription-repair coupling factor (TIGR) sig. 37 86
o Desulfovibrio vulgaris Miyazaki F DvMF_0285 transcription-repair coupling factor (RefSeq) sig. 38 86
  Synechococcus elongatus PCC 7942 Synpcc7942_1326 mfd transcription-repair coupling factor strong 46 58
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15820 transcription-repair coupling factor sig. 44 58
  Mycobacterium tuberculosis H37Rv Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) cofit 47 56
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1312 transcription-repair coupling factor (mfd) insig. 45 55
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02110 transcription-repair coupling factor cofit 42 59
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21070 transcription-repair coupling factor insig. 47 52
  Phocaeicola dorei CL03T12C01 ABI39_RS11420 transcription-repair coupling factor sig. 40 60
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15450 transcription-repair coupling factor sig. 40 60
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21080 transcription-repair coupling factor sig. 43 58
  Bacteroides ovatus ATCC 8483 BACOVA_00401 transcription-repair coupling factor insig. 41 57
  Bacteroides thetaiotaomicron VPI-5482 BT0252 transcription-repair coupling factor (NCBI ptt file) sig. 41 57
  Bacteroides stercoris CC31F HMPREF1181_RS04640 transcription-repair coupling factor sig. 41 57
  Fusobacterium nucleatum SB010 HUW76_10680 transcription-repair coupling factor strong 41 57