Homologs of HSERO_RS17985 from Herbaspirillum seropedicae SmR1

tRNA pseudouridine synthase B
SEED: tRNA pseudouridine synthase B (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase B

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS17985 tRNA pseudouridine synthase B sig. 100 100
o Ralstonia solanacearum GMI1000 RS_RS06470 tRNA pseudouridine(55) synthase TruB insig. 65 92
o Ralstonia solanacearum PSI07 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB insig. 65 91
o Ralstonia solanacearum UW163 UW163_RS13150 tRNA pseudouridine(55) synthase TruB insig. 64 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB insig. 64 92
o Paraburkholderia graminis OAS925 ABIE53_001832 tRNA pseudouridine55 synthase sig. 64 91
o Paraburkholderia sabiae LMG 24235 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB sig. 63 90
o Ralstonia sp. UNC404CL21Col ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB strong 65 90
o Burkholderia phytofirmans PsJN BPHYT_RS08080 tRNA pseudouridine synthase B sig. 63 91
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05106 tRNA pseudouridine synthase B sig. 64 91
o Cupriavidus basilensis FW507-4G11 RR42_RS12835 tRNA pseudouridine synthase B sig. 63 91
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4345 tRNA pseudouridine synthase B (EC 4.2.1.70) cofit 63 77
o Dechlorosoma suillum PS Dsui_2720 tRNA pseudouridine 55 synthase cofit 57 90
o Variovorax sp. OAS795 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB sig. 56 90
o Pseudomonas stutzeri RCH2 Psest_0983 tRNA pseudouridine 55 synthase no data 53 90
o Pseudomonas putida KT2440 PP_4710 tRNA pseudouridine 55 synthase strong 53 90
o Variovorax sp. SCN45 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) insig. 58 86
o Pseudomonas sp. S08-1 OH686_17155 tRNA pseudouridine(55) synthase cofit 53 90
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 52 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 52 90
o Pseudomonas fluorescens FW300-N2E3 AO353_05550 pseudouridine synthase strong 51 90
o Pseudomonas syringae pv. syringae B728a Psyr_4178 tRNA pseudouridine synthase B strong 52 90
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4178 tRNA pseudouridine synthase B strong 52 90
o Pseudomonas sp. RS175 PFR28_00092 tRNA pseudouridine synthase B no data 51 90
o Pseudomonas fluorescens FW300-N2C3 AO356_07400 pseudouridine synthase strong 52 90
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 52 90
o Acidovorax sp. GW101-3H11 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) sig. 56 89
o Pseudomonas fluorescens SBW25 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 51 90
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 51 90
o Vibrio cholerae E7946 ATCC 55056 CSW01_03400 tRNA pseudouridine(55) synthase TruB insig. 48 88
o Pseudomonas simiae WCS417 PS417_23960 pseudouridine synthase no data 51 90
o Serratia liquefaciens MT49 IAI46_01945 tRNA pseudouridine(55) synthase TruB cofit 47 88
o Dickeya dadantii 3937 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB cofit 47 88
o Kangiella aquimarina DSM 16071 B158DRAFT_0108 tRNA pseudouridine 55 synthase strong 47 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 47 88
o Pantoea sp. MT58 IAI47_17015 tRNA pseudouridine(55) synthase TruB insig. 47 88
o Escherichia fergusonii Becca EFB2_00657 tRNA pseudouridine synthase B insig. 47 88
o Escherichia coli BL21 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase strong 47 88
o Escherichia coli ECOR38 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB strong 47 88
o Escherichia coli ECRC101 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB insig. 47 88
o Escherichia coli ECRC102 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB insig. 47 88
o Escherichia coli ECRC98 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB no data 47 88
o Escherichia coli ECRC99 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB no data 47 88
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00534 tRNA pseudouridine synthase B insig. 47 88
o Escherichia coli Nissle 1917 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB cofit 47 88
o Escherichia coli BW25113 b3166 truB tRNA pseudouridine synthase B (NCBI) strong 47 88
o Escherichia coli ECRC101 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB insig. 47 88
o Klebsiella michiganensis M5al BWI76_RS25080 tRNA pseudouridine(55) synthase strong 47 88
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 50 91
  Acinetobacter radioresistens SK82 MPMX26_02778 tRNA pseudouridine synthase B cofit 51 77
o Enterobacter asburiae PDN3 EX28DRAFT_3217 tRNA pseudouridine(55) synthase cofit 47 88
o Enterobacter sp. TBS_079 MPMX20_04071 tRNA pseudouridine synthase B sig. 47 88
o Escherichia coli ECOR27 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB strong 47 88
o Escherichia coli ECRC62 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB insig. 47 88
o Dickeya dianthicola ME23 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB cofit 45 90
o Dickeya dianthicola 67-19 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB cofit 46 90
o Pectobacterium carotovorum WPP14 HER17_RS18200 tRNA pseudouridine(55) synthase TruB insig. 44 90
  Castellaniella sp019104865 MT123 ABCV34_RS02135 tRNA pseudouridine(55) synthase TruB cofit 59 68
o Marinobacter adhaerens HP15 HP15_3065 tRNA pseudouridine synthase B insig. 48 89
o Rahnella sp. WP5 EX31_RS08530 tRNA pseudouridine(55) synthase TruB cofit 45 90
o Erwinia tracheiphila SCR3 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB insig. 44 88
o Shewanella loihica PV-4 Shew_2825 tRNA pseudouridine synthase B (RefSeq) sig. 45 88
o Shewanella amazonensis SB2B Sama_0963 pseudouridylate synthase (RefSeq) sig. 45 88
o Alteromonas macleodii MIT1002 MIT1002_01773 tRNA pseudouridine synthase B insig. 44 84
o Shewanella sp. ANA-3 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) strong 45 88
o Rhodanobacter denitrificans MT42 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB cofit 50 78
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB strong 50 78
o Lysobacter sp. OAE881 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB cofit 45 90
o Rhodanobacter sp. FW510-T8 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB insig. 49 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB cofit 51 76
  Azospirillum sp. SherDot2 MPMX19_02524 tRNA pseudouridine synthase B cofit 43 76
o Rhodospirillum rubrum S1H Rru_A3783 tRNA pseudouridine synthase B (NCBI) cofit 41 81
o Bosea sp. OAE506 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB sig. 38 94
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13345 tRNA pseudouridine(55) synthase TruB insig. 40 76
  Magnetospirillum magneticum AMB-1 AMB_RS20810 tRNA pseudouridine(55) synthase TruB insig. 41 75
  Fusobacterium nucleatum SB010 HUW76_06175 tRNA pseudouridine(55) synthase TruB cofit 44 63
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2142 tRNA pseudouridine(55) synthase insig. 41 71
o Rhodopseudomonas palustris CGA009 TX73_002255 tRNA pseudouridine(55) synthase TruB sig. 38 90
  Caulobacter crescentus NA1000 CCNA_00035 tRNA pseudouridine synthase B strong 40 76
  Caulobacter crescentus NA1000 Δfur CCNA_00035 tRNA pseudouridine synthase B cofit 40 76
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04640 tRNA pseudouridine(55) synthase sig. 40 67
  Dinoroseobacter shibae DFL-12 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) sig. 39 75
  Agrobacterium fabrum C58 Atu0085 tRNA pseudouridine 55 synthase sig. 39 79
o Sinorhizobium meliloti 1021 SMc00321 tRNA pseudouridine synthase B strong 34 91
  Mycobacterium tuberculosis H37Rv Rv2793c Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) insig. 40 79
  Rhizobium sp. OAE497 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB sig. 39 77
  Phaeobacter inhibens DSM 17395 PGA1_c32950 tRNA pseudouridine synthase B strong 37 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3274 tRNA pseudouridine 55 synthase sig. 40 63
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11315 tRNA pseudouridine(55) synthase TruB strong 42 61
  Phocaeicola dorei CL03T12C01 ABI39_RS05615 tRNA pseudouridine(55) synthase TruB sig. 42 61
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS17110 tRNA pseudouridine(55) synthase TruB sig. 40 62
  Bacteroides ovatus ATCC 8483 BACOVA_02914 tRNA pseudouridine synthase B sig. 41 61
  Desulfovibrio vulgaris Hildenborough JW710 DVU0505 truB tRNA pseudouridine synthase B (TIGR) sig. 39 77
  Bacteroides stercoris CC31F HMPREF1181_RS01710 tRNA pseudouridine(55) synthase TruB strong 40 60
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02015 tRNA pseudouridine(55) synthase TruB sig. 39 67
  Bifidobacterium breve UCC2003 BBR_RS18750 pseudouridine synthase strong 35 66
  Bacteroides thetaiotaomicron VPI-5482 BT3213 tRNA pseudouridine synthase B (NCBI ptt file) sig. 41 60
  Desulfovibrio vulgaris Miyazaki F DvMF_2510 tRNA pseudouridine synthase B (RefSeq) insig. 37 77
  Synechococcus elongatus PCC 7942 Synpcc7942_1222 truB tRNA pseudouridine synthase B strong 37 75
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16155 tRNA pseudouridine(55) synthase TruB strong 38 60