Homologs of GFF2947 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Ribosome hibernation protein YhbH
SEED: Ribosome hibernation protein YhbH
KEGG: putative sigma-54 modulation protein

150 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 100 100
o Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 95 100
o Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 95 100
o Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 95 100
o Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 95 100
o Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 95 100
o Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 95 100
o Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 95 100
o Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 95 100
o Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 95 100
o Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 95 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 95 100
o Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 95 100
o Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 95 100
o Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 94 100
o Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 92 100
o Klebsiella pneumoniae MKP103 KDGMDA_06085 ribosome hibernation promoting factor insig. 87 100
o Klebsiella pneumoniae MRSN742743 GJGHJB_00495 hpf ribosome hibernation promoting factor sig. 87 100
o Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 87 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 83 100
o Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 82 100
o Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 82 100
o Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 82 100
o Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 82 100
o Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 82 100
o Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 78 100
o Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 79 100
o Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor cofit 79 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS17480 hpf ribosome hibernation promoting factor cofit 78 100
o Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 77 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 63 100
o Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 59 100
o Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 63 96
o Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 56 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 55 100
o Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 57 100
o Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 56 100
o Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 56 100
o Pseudomonas segetis P6 ACVTMO_RS19125 hpf ribosome hibernation-promoting factor, HPF/YfiA family strong 55 96
o Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 54 96
o Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 54 96
o Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 55 96
o Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 53 96
o Pseudomonas aeruginosa MRSN321 PFGADD_04667 hpf ribosome hibernation-promoting factor HPF/YfiA family strong 54 96
o Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 54 96
o Pseudomonas aeruginosa PUPa3 NPBIFN_04726 hpf ribosome hibernation-promoting factor HPF/YfiA family strong 54 96
o Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 55 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 55 96
o Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 53 96
o Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 54 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 53 96
o Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 53 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 53 96
o Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 51 96
o Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 53 96
o Pseudomonas protegens RBAN4 FABNJH_04745 raiA Ribosome-associated translation inhibitor RaiA insig. 53 96
o Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 51 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 51 96
o Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 46 100
o Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 49 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 49 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor cofit 49 96
o Pseudomonas orientalis W4I3 QF045_RS07330 ribosome-associated translation inhibitor RaiA no data 49 96
o Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 44 100
o Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 41 100
o Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 40 100
o Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 40 100
o Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 40 96
o Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 39 100
o Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 40 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 40 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS15710 ribosome-associated translation inhibitor RaiA insig. 40 97
o Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 40 97
o Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 41 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 41 100
o Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 42 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 38 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 42 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 40 100
o Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 40 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 41 97
o Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 35 100
  Klebsiella pneumoniae MKP103 KDGMDA_02150 ribosome-associated translation inhibitor RaiA sig. 41 92
  Klebsiella pneumoniae MRSN742743 GJGHJB_01186 raiA ribosome-associated translation inhibitor RaiA sig. 41 92
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 41 92
o Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 35 100
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_26880 hypothetical protein insig. 41 92
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 40 92
  Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 40 92
  Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 40 92
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 34 100
o Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 34 100
  Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 40 92
o Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 34 100
  Erwinia amylovora T8 OLJFJH_09715 ribosome-associated translation inhibitor RaiA insig. 40 92
  Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA sig. 41 92
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04790 raiA ribosome-associated translation inhibitor RaiA cofit 41 92
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 39 92
  Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 39 92
  Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 39 92
  Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA insig. 39 92
  Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 39 92
  Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 39 92
  Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA cofit 39 92
  Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 39 92
  Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA sig. 39 92
  Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 39 92
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 39 92
  Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 39 92
  Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 39 92
  Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA strong 39 92
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 38 98
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 36 92
  Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 36 92
  Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 36 92
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 35 96
  Dinoroseobacter shibae DFL-12 Dshi_3583 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) sig. 34 100
o Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 32 94
o Acinetobacter baumannii LAC-4 RR41_RS15825 ribosome-associated translation inhibitor RaiA sig. 30 94
  Synechocystis sp000284455 PCC 6803 SGL_RS12505 ribosome-associated translation inhibitor RaiA cofit 34 100
  Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 28 96
o Phocaeicola dorei CL03T12C01 ABI39_RS03830 ribosome-associated translation inhibitor RaiA strong 34 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA strong 34 98
  Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 35 99
  Phaeobacter inhibens DSM 17395 PGA1_c35970 putative sigma(54) modulation protein sig. 31 100
  Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 30 98
  Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 32 97
  Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 32 89
  Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 32 89
  Shewanella loihica PV-4 Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) no data 31 98
  Xanthobacter sp. DMC5 GFF3924 Ribosome hibernation promotion factor insig. 29 98
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02840 30S ribosomal protein S30 sig. 32 98
  Shewanella oneidensis MR-1 SO3403 yfiA-1 ribosomal subunit interface protein (NCBI ptt file) no data 29 98
  Bacteroides ovatus ATCC 8483 BACOVA_01049 hypothetical protein sig. 34 96
  Desulfovibrio vulgaris Hildenborough JW710 DVU1629 yfiA ribosomal subunit interface protein (TIGR) strong 29 100
  Rhizobium sp. OAE497 ABIE40_RS01865 ribosome-associated translation inhibitor RaiA sig. 27 100
  Bacteroides thetaiotaomicron VPI-5482 BT2741 sigma-54 modulation protein (NCBI ptt file) strong 31 96
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 28 89
  Sphingobium sp. HT1-2 GFF4166 Ribosome hibernation promoting factor Hpf cofit 31 98
  Agrobacterium fabrum C58 Atu0331 sigma-54 modulation protein strong 26 100
  Desulfovibrio vulgaris Miyazaki F DvMF_0426 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 29 98
  Bosea sp. OAE506 ABIE41_RS00120 ribosome-associated translation inhibitor RaiA insig. 30 85
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS10880 ribosome-associated translation inhibitor RaiA strong 30 98
  Bacteroides stercoris CC31F HMPREF1181_RS00620 ribosome-associated translation inhibitor RaiA strong 29 96
  Rhodopseudomonas palustris CGA009 TX73_000265 ribosome-associated translation inhibitor RaiA cofit 27 98
  Caulobacter crescentus NA1000 CCNA_03711 ribosome-associated factor Y strong 30 100
  Caulobacter crescentus NA1000 Δfur CCNA_03711 ribosome-associated factor Y cofit 30 100
  Mycobacterium tuberculosis H37Rv Rv3241c Conserved protein insig. 30 99
  Shewanella sp. ANA-3 Shewana3_1151 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) sig. 26 76
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02590 ribosomal subunit interface protein insig. 23 92