Homologs of CA265_RS16155 from Pedobacter sp. GW460-11-11-14-LB5

tRNA pseudouridine(55) synthase TruB
SEED: tRNA pseudouridine synthase B (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase B

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16155 tRNA pseudouridine(55) synthase TruB strong 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02015 tRNA pseudouridine(55) synthase TruB sig. 69 96
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3274 tRNA pseudouridine 55 synthase sig. 62 89
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04640 tRNA pseudouridine(55) synthase sig. 56 93
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11315 tRNA pseudouridine(55) synthase TruB strong 54 88
o Phocaeicola dorei CL03T12C01 ABI39_RS05615 tRNA pseudouridine(55) synthase TruB sig. 54 88
o Bacteroides stercoris CC31F HMPREF1181_RS01710 tRNA pseudouridine(55) synthase TruB strong 51 91
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS17110 tRNA pseudouridine(55) synthase TruB sig. 52 85
o Bacteroides thetaiotaomicron VPI-5482 BT3213 tRNA pseudouridine synthase B (NCBI ptt file) sig. 50 87
o Bacteroides ovatus ATCC 8483 BACOVA_02914 tRNA pseudouridine synthase B sig. 50 87
  Dinoroseobacter shibae DFL-12 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) sig. 44 85
  Mycobacterium tuberculosis H37Rv Rv2793c Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) insig. 40 86
  Burkholderia phytofirmans PsJN BPHYT_RS08080 tRNA pseudouridine synthase B sig. 40 90
  Bifidobacterium breve UCC2003 BBR_RS18750 pseudouridine synthase strong 37 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05106 tRNA pseudouridine synthase B sig. 39 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB sig. 39 96
  Ralstonia solanacearum GMI1000 RS_RS06470 tRNA pseudouridine(55) synthase TruB insig. 39 86
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB insig. 39 86
  Ralstonia solanacearum UW163 UW163_RS13150 tRNA pseudouridine(55) synthase TruB insig. 39 86
  Alteromonas macleodii MIT1002 MIT1002_01773 tRNA pseudouridine synthase B insig. 40 81
  Ralstonia sp. UNC404CL21Col ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB strong 39 84
  Cupriavidus basilensis FW507-4G11 RR42_RS12835 tRNA pseudouridine synthase B sig. 41 84
  Pseudomonas putida KT2440 PP_4710 tRNA pseudouridine 55 synthase strong 40 86
  Ralstonia solanacearum PSI07 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB insig. 40 86
  Caulobacter crescentus NA1000 CCNA_00035 tRNA pseudouridine synthase B strong 39 87
  Caulobacter crescentus NA1000 Δfur CCNA_00035 tRNA pseudouridine synthase B cofit 39 87
  Paraburkholderia graminis OAS925 ABIE53_001832 tRNA pseudouridine55 synthase sig. 39 90
  Dechlorosoma suillum PS Dsui_2720 tRNA pseudouridine 55 synthase cofit 41 87
  Pseudomonas fluorescens SBW25 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 40 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 40 86
  Pseudomonas syringae pv. syringae B728a Psyr_4178 tRNA pseudouridine synthase B strong 40 86
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4178 tRNA pseudouridine synthase B strong 40 86
  Pseudomonas simiae WCS417 PS417_23960 pseudouridine synthase no data 40 86
  Desulfovibrio vulgaris Miyazaki F DvMF_2510 tRNA pseudouridine synthase B (RefSeq) insig. 37 85
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 36 91
  Pseudomonas fluorescens FW300-N2E3 AO353_05550 pseudouridine synthase strong 40 86
  Pseudomonas sp. S08-1 OH686_17155 tRNA pseudouridine(55) synthase cofit 36 86
  Pseudomonas stutzeri RCH2 Psest_0983 tRNA pseudouridine 55 synthase no data 39 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 39 86
  Pseudomonas sp. RS175 PFR28_00092 tRNA pseudouridine synthase B no data 38 86
  Phaeobacter inhibens DSM 17395 PGA1_c32950 tRNA pseudouridine synthase B strong 40 88
  Azospirillum sp. SherDot2 MPMX19_02524 tRNA pseudouridine synthase B cofit 39 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 38 86
  Desulfovibrio vulgaris Hildenborough JW710 DVU0505 truB tRNA pseudouridine synthase B (TIGR) sig. 38 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 39 86
  Fusobacterium nucleatum SB010 HUW76_06175 tRNA pseudouridine(55) synthase TruB cofit 35 86
  Lysobacter sp. OAE881 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB cofit 34 97
  Pseudomonas fluorescens FW300-N2C3 AO356_07400 pseudouridine synthase strong 38 86
  Rhodanobacter denitrificans MT42 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB cofit 38 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB strong 38 84
  Herbaspirillum seropedicae SmR1 HSERO_RS17985 tRNA pseudouridine synthase B sig. 38 84
  Synechococcus elongatus PCC 7942 Synpcc7942_1222 truB tRNA pseudouridine synthase B strong 39 86
  Marinobacter adhaerens HP15 HP15_3065 tRNA pseudouridine synthase B insig. 37 91
  Acinetobacter radioresistens SK82 MPMX26_02778 tRNA pseudouridine synthase B cofit 38 87
  Magnetospirillum magneticum AMB-1 AMB_RS20810 tRNA pseudouridine(55) synthase TruB insig. 39 86
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4345 tRNA pseudouridine synthase B (EC 4.2.1.70) cofit 38 87
  Rhizobium sp. OAE497 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB sig. 38 86
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 34 99
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13345 tRNA pseudouridine(55) synthase TruB insig. 37 83
  Acidovorax sp. GW101-3H11 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) sig. 40 81
  Escherichia coli ECRC101 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB cofit 37 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB cofit 43 67
  Escherichia coli BL21 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase strong 37 86
  Escherichia coli ECOR38 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB strong 37 86
  Escherichia coli ECRC100 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB cofit 37 86
  Escherichia coli ECRC102 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB insig. 37 86
  Escherichia coli ECRC98 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB cofit 37 86
  Escherichia coli ECRC99 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB no data 37 86
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00534 tRNA pseudouridine synthase B insig. 37 86
  Escherichia coli Nissle 1917 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB strong 37 86
  Escherichia coli BW25113 b3166 truB tRNA pseudouridine synthase B (NCBI) strong 37 86
o Castellaniella sp019104865 MT123 ABCV34_RS02135 tRNA pseudouridine(55) synthase TruB cofit 35 84
  Bosea sp. OAE506 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB sig. 38 84
  Escherichia fergusonii Becca EFB2_00657 tRNA pseudouridine synthase B insig. 36 86
  Vibrio cholerae E7946 ATCC 55056 CSW01_03400 tRNA pseudouridine(55) synthase TruB insig. 36 81
  Serratia liquefaciens MT49 IAI46_01945 tRNA pseudouridine(55) synthase TruB cofit 34 88
  Variovorax sp. OAS795 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB sig. 40 81
  Rhodanobacter sp. FW510-T8 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB insig. 38 84
  Shewanella sp. ANA-3 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) strong 38 79
  Escherichia coli ECOR27 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB strong 36 86
  Escherichia coli ECRC62 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB cofit 36 86
  Shewanella loihica PV-4 Shew_2825 tRNA pseudouridine synthase B (RefSeq) sig. 39 79
  Klebsiella michiganensis M5al BWI76_RS25080 tRNA pseudouridine(55) synthase strong 36 86
  Pantoea sp. MT58 IAI47_17015 tRNA pseudouridine(55) synthase TruB insig. 35 88
  Rhodospirillum rubrum S1H Rru_A3783 tRNA pseudouridine synthase B (NCBI) cofit 37 87
  Shewanella amazonensis SB2B Sama_0963 pseudouridylate synthase (RefSeq) sig. 33 92
  Enterobacter sp. TBS_079 MPMX20_04071 tRNA pseudouridine synthase B sig. 33 99
  Dickeya dadantii 3937 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB cofit 33 97
  Dickeya dianthicola 67-19 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB cofit 35 88
  Dickeya dianthicola ME23 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB cofit 35 88
  Enterobacter asburiae PDN3 EX28DRAFT_3217 tRNA pseudouridine(55) synthase cofit 35 86
  Sinorhizobium meliloti 1021 SMc00321 tRNA pseudouridine synthase B strong 36 86
  Pectobacterium carotovorum WPP14 HER17_RS18200 tRNA pseudouridine(55) synthase TruB insig. 35 88
  Kangiella aquimarina DSM 16071 B158DRAFT_0108 tRNA pseudouridine 55 synthase strong 35 93
  Agrobacterium fabrum C58 Atu0085 tRNA pseudouridine 55 synthase sig. 37 81
  Variovorax sp. SCN45 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) insig. 38 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2142 tRNA pseudouridine(55) synthase insig. 34 90
  Erwinia tracheiphila SCR3 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB insig. 33 88
  Rahnella sp. WP5 EX31_RS08530 tRNA pseudouridine(55) synthase TruB cofit 32 88
  Rhodopseudomonas palustris CGA009 TX73_002255 tRNA pseudouridine(55) synthase TruB sig. 37 86