Homologs of BBR_RS14115 from Bifidobacterium breve UCC2003

transcription-repair coupling factor
SEED: Transcription-repair coupling factor
KEGG: transcription-repair coupling factor (superfamily II helicase)

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Bifidobacterium breve UCC2003	BBR_RS14115		transcription-repair coupling factor	strong	100	100
o	Mycobacterium tuberculosis H37Rv	Rv1020		Probable transcription-repair coupling factor Mfd (TRCF)	cofit	50	95
o	Klebsiella michiganensis M5al	BWI76_RS11205		transcription-repair coupling factor	strong	38	91
o	Rahnella sp. WP5	EX31_RS24520		transcription-repair coupling factor	insig.	37	89
o	Escherichia fergusonii Becca	EFB2_02861		Transcription-repair-coupling factor	insig.	38	88
o	Escherichia coli ECOR38	HEPCGN_24015	mfd	transcription-repair coupling factor	strong	38	88
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_02552		Transcription-repair-coupling factor	cofit	38	88
o	Escherichia coli ECRC101	OKFHMN_03470	mfd	transcription-repair coupling factor	sig.	38	88
o	Escherichia coli ECRC101	MCAODC_22830	mfd	transcription-repair coupling factor	strong	38	88
o	Escherichia coli ECRC102	NIAGMN_24360	mfd	transcription-repair coupling factor	sig.	38	88
o	Escherichia coli ECRC98	JDDGAC_07130	mfd	transcription-repair coupling factor	no data	38	88
o	Escherichia coli ECRC99	KEDOAH_24285	mfd	transcription-repair coupling factor	no data	38	88
o	Escherichia coli ECOR27	NOLOHH_20995	mfd	transcription-repair coupling factor	cofit	38	88
o	Escherichia coli ECRC62	BNILDI_19160	mfd	transcription-repair coupling factor	sig.	38	88
o	Escherichia coli BW25113	b1114	mfd	transcription-repair coupling factor (NCBI)	strong	38	88
o	Synechococcus elongatus PCC 7942	Synpcc7942_1326	mfd	transcription-repair coupling factor	strong	38	89
o	Escherichia coli BL21	ECD_01110		transcription-repair coupling factor	sig.	38	88
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF3397		Transcription-repair coupling factor	strong	38	88
o	Serratia liquefaciens MT49	IAI46_10320		transcription-repair coupling factor	insig.	37	88
o	Enterobacter asburiae PDN3	EX28DRAFT_1816		transcription-repair coupling factor (mfd)	cofit	37	88
o	Dickeya dadantii 3937	DDA3937_RS13000		transcription-repair coupling factor	cofit	37	85
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2278		Transcription-repair coupling factor	strong	39	85
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS01445		transcription-repair coupling factor	sig.	38	87
o	Ralstonia solanacearum UW163	UW163_RS14755		transcription-repair coupling factor	insig.	38	87
o	Ralstonia solanacearum PSI07	RPSI07_RS16040		transcription-repair coupling factor	sig.	38	88
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS13240		transcription-repair coupling factor	sig.	38	88
o	Pseudomonas fluorescens FW300-N2E3	AO353_00435		transcription-repair coupling factor	strong	39	85
o	Pseudomonas sp. RS175	PFR28_01123		Transcription-repair-coupling factor	sig.	38	89
o	Pseudomonas fluorescens FW300-N2C3	AO356_02270		transcription-repair coupling factor	strong	39	85
o	Ralstonia solanacearum GMI1000	RS_RS08275		transcription-repair coupling factor	sig.	38	88
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS21210		transcription-repair coupling factor	strong	39	86
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3916		Transcription-repair coupling factor	strong	38	87
o	Vibrio cholerae E7946 ATCC 55056	CSW01_09445		transcription-repair coupling factor	insig.	36	89
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00880		transcription-repair coupling factor	sig.	38	87
o	Paraburkholderia graminis OAS925	ABIE53_002095		transcription-repair coupling factor (superfamily II helicase)	strong	38	87
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS02040		transcription-repair coupling factor	strong	37	89
o	Rhodanobacter denitrificans MT42	LRK55_RS01815		transcription-repair coupling factor	strong	37	89
o	Burkholderia phytofirmans PsJN	BPHYT_RS09290		helicase	sig.	37	87
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_4027		Transcription-repair coupling factor	strong	38	84
o	Lysobacter sp. OAE881	ABIE51_RS14320		transcription-repair coupling factor	insig.	38	86
o	Pseudomonas fluorescens SBW25	PFLU_RS07710		transcription-repair coupling factor	cofit	38	85
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS07710		transcription-repair coupling factor	sig.	38	85
o	Pseudomonas simiae WCS417	PS417_07635		transcription-repair coupling factor	strong	38	85
o	Pseudomonas syringae pv. syringae B728a	Psyr_1896		transcription-repair coupling factor	insig.	38	87
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1896		transcription-repair coupling factor	insig.	38	87
o	Marinobacter adhaerens HP15	HP15_2257		transcription-repair-coupling factor	strong	38	85
o	Variovorax sp. OAS795	ABID97_RS17285		transcription-repair coupling factor	sig.	37	89
o	Acinetobacter radioresistens SK82	MPMX26_01319		Transcription-repair-coupling factor	insig.	37	84
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4934		Transcription-repair coupling factor	cofit	38	89
o	Variovorax sp. SCN45	GFF412		Transcription-repair coupling factor	insig.	38	85
o	Magnetospirillum magneticum AMB-1	AMB_RS12390		transcription-repair coupling factor	insig.	37	90
o	Bosea sp. OAE506	ABIE41_RS15825		transcription-repair coupling factor	cofit	36	94
o	Shewanella sp. ANA-3	Shewana3_2289		transcription-repair coupling factor (RefSeq)	sig.	37	84
o	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS04775		transcription-repair coupling factor	cofit	38	90
o	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS21080		transcription-repair coupling factor	sig.	36	90
o	Rhodopseudomonas palustris CGA009	TX73_013805		transcription-repair coupling factor	insig.	38	85
o	Alteromonas macleodii MIT1002	MIT1002_01646		Transcription-repair-coupling factor	cofit	36	91
o	Acidovorax sp. GW101-3H11	Ac3H11_328		Transcription-repair coupling factor	sig.	36	91
o	Pseudomonas stutzeri RCH2	Psest_1653		transcription-repair coupling factor (mfd)	strong	37	89
o	Cupriavidus basilensis FW507-4G11	RR42_RS07845		transcription-repair coupling factor	strong	37	87
o	Sphingomonas koreensis DSMZ 15582	Ga0059261_0960		transcription-repair coupling factor (mfd)	sig.	36	89
o	Agrobacterium fabrum C58	Atu1778		transcription-repair coupling factor	sig.	36	89
o	Dechlorosoma suillum PS	Dsui_2385		transcription-repair coupling factor Mfd	strong	37	88
o	Sinorhizobium meliloti 1021	SMc04450		transcription-repair coupling factor	sig.	35	89
o	Rhizobium sp. OAE497	ABIE40_RS09310		transcription-repair coupling factor	insig.	36	89
o	Rhodospirillum rubrum S1H	Rru_A1726		Transcription-repair coupling factor (NCBI)	sig.	36	89
	Enterobacter sp. TBS_079	MPMX20_01795		Transcription-repair-coupling factor	strong	46	56
o	Caulobacter crescentus NA1000	CCNA_01920		transcription-repair coupling factor Mfd	strong	36	89
o	Caulobacter crescentus NA1000 Δfur	CCNA_01920		transcription-repair coupling factor Mfd	cofit	36	89
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_1312		transcription-repair coupling factor (mfd)	insig.	37	79
o	Azospirillum sp. SherDot2	MPMX19_00876		Transcription-repair-coupling factor	cofit	35	89
	Dickeya dianthicola 67-19	HGI48_RS13065		transcription-repair coupling factor	cofit	44	60
o	Desulfovibrio vulgaris Hildenborough JW710	DVU1903	mfd	transcription-repair coupling factor (TIGR)	sig.	37	85
	Shewanella loihica PV-4	Shew_1630		transcription-repair coupling factor (RefSeq)	strong	49	51
o	Parabacteroides merdae CL09T00C40	HMPREF1078_RS02110		transcription-repair coupling factor	cofit	36	80
	Dickeya dianthicola ME23	DZA65_RS13530		transcription-repair coupling factor	cofit	46	56
	Erwinia tracheiphila SCR3	LU632_RS14730	mfd	transcription-repair coupling factor	insig.	46	54
o	Phaeobacter inhibens DSM 17395	PGA1_c14920		transcription-repair-coupling factor Mfd	strong	35	89
o	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_15820		transcription-repair coupling factor	sig.	37	83
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS21070		transcription-repair coupling factor	insig.	45	58
	Pectobacterium carotovorum WPP14	HER17_RS08775		transcription-repair coupling factor	insig.	42	62
o	Phocaeicola dorei CL03T12C01	ABI39_RS11420		transcription-repair coupling factor	sig.	36	80
	Paraburkholderia sabiae LMG 24235	QEN71_RS22060		transcription-repair coupling factor	insig.	45	57
o	Dinoroseobacter shibae DFL-12	Dshi_1561		transcription-repair coupling factor (RefSeq)	sig.	35	85
o	Bacteroides stercoris CC31F	HMPREF1181_RS04640		transcription-repair coupling factor	sig.	36	81
	Pantoea sp. MT58	IAI47_11975		transcription-repair coupling factor	insig.	46	54
	Kangiella aquimarina DSM 16071	B158DRAFT_1800		transcription-repair coupling factor	strong	46	55
	Rhodanobacter sp. FW510-T8	OKGIIK_09105	mfd	transcription-repair coupling factor	cofit	45	56
o	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS15450		transcription-repair coupling factor	sig.	36	80
	Herbaspirillum seropedicae SmR1	HSERO_RS15180		transcription-repair coupling factor	strong	46	56
o	Shewanella oneidensis MR-1	SO2255	mfd	transcription-repair coupling factor (NCBI ptt file)	strong	48	51
o	Pseudomonas sp. S08-1	OH686_21990		transcription-repair coupling factor	cofit	46	54
o	Bacteroides thetaiotaomicron VPI-5482	BT0252		transcription-repair coupling factor (NCBI ptt file)	sig.	36	80
	Shewanella amazonensis SB2B	Sama_1330		transcription-repair coupling factor (RefSeq)	strong	47	52
o	Pseudomonas putida KT2440	PP_2148		transcription-repair coupling factor	strong	47	53
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.1775.1		Transcription-repair coupling factor	insig.	45	56
	Bacteroides ovatus ATCC 8483	BACOVA_00401		transcription-repair coupling factor	insig.	41	59
	Desulfovibrio vulgaris Miyazaki F	DvMF_0285		transcription-repair coupling factor (RefSeq)	sig.	47	50
	Castellaniella sp019104865 MT123	ABCV34_RS08660		transcription-repair coupling factor	cofit	45	56
	Fusobacterium nucleatum SB010	HUW76_10680		transcription-repair coupling factor	strong	41	54