Homologs of Dshi_1576 from Dinoroseobacter shibae DFL-12

putative TIM-barrel protein, nifR3 family (RefSeq)
SEED: tRNA dihydrouridine synthase B (EC 1.-.-.-)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dinoroseobacter shibae DFL-12 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) cofit 100 100
o Phaeobacter inhibens DSM 17395 PGA1_c14770 tRNA-dihydrouridine synthase DusB strong 66 97
o Sinorhizobium meliloti 1021 SMc01041 NIFR3-like protein strong 56 97
o Agrobacterium fabrum C58 Atu1444 nitrogen regulation protein strong 55 95
o Rhizobium sp. OAE497 ABIE40_RS09080 tRNA dihydrouridine synthase DusB insig. 55 94
o Rhodopseudomonas palustris CGA009 TX73_013410 tRNA dihydrouridine synthase DusB insig. 55 95
o Azospirillum sp. SherDot2 MPMX19_01110 tRNA-dihydrouridine synthase B insig. 50 95
o Azospirillum brasilense Sp245 AZOBR_RS14420 tRNA-dihydrouridine synthase sig. 51 96
o Magnetospirillum magneticum AMB-1 AMB_RS11940 tRNA dihydrouridine synthase DusB insig. 51 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0140 tRNA-U20-dihydrouridine synthase strong 49 92
o Caulobacter crescentus NA1000 CCNA_01813 tRNA-dihydrouridine synthase strong 55 84
o Caulobacter crescentus NA1000 Δfur CCNA_01813 tRNA-dihydrouridine synthase cofit 55 84
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04810 tRNA dihydrouridine synthase DusB cofit 51 88
o Pseudomonas stutzeri RCH2 Psest_1016 putative TIM-barrel protein, nifR3 family sig. 49 85
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4303.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 50 85
o Lysobacter sp. OAE881 ABIE51_RS16450 tRNA dihydrouridine synthase DusB insig. 48 89
o Ralstonia sp. UNC404CL21Col ABZR87_RS07650 tRNA dihydrouridine synthase DusB insig. 47 92
o Paraburkholderia sabiae LMG 24235 QEN71_RS26770 tRNA dihydrouridine synthase DusB insig. 48 85
o Rhodospirillum rubrum S1H Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) sig. 51 86
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB insig. 49 84
  Ralstonia solanacearum UW163 UW163_RS01890 tRNA dihydrouridine synthase DusB insig. 49 84
o Marinobacter adhaerens HP15 HP15_3225 tRNA-dihydrouridine synthase B sig. 45 92
o Variovorax sp. OAS795 ABID97_RS24735 tRNA dihydrouridine synthase DusB insig. 46 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase insig. 48 85
o Ralstonia solanacearum PSI07 RPSI07_RS21520 tRNA dihydrouridine synthase DusB insig. 46 92
o Variovorax sp. SCN45 GFF2144 tRNA-dihydrouridine synthase DusB cofit 48 89
o Pseudomonas putida KT2440 PP_4820 tRNA-dihydrouridine synthase B sig. 48 88
o Alteromonas macleodii MIT1002 MIT1002_03957 putative tRNA-dihydrouridine synthase sig. 47 84
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 50 85
o Ralstonia solanacearum GMI1000 RS_RS02515 tRNA dihydrouridine synthase DusB insig. 46 91
o Pseudomonas sp. S08-1 OH686_07610 tRNA-dihydrouridine synthase DusB sig. 48 85
o Dechlorosoma suillum PS Dsui_1593 putative TIM-barrel protein, nifR3 family strong 47 84
o Kangiella aquimarina DSM 16071 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase strong 44 86
o Burkholderia phytofirmans PsJN BPHYT_RS16585 tRNA-dihydrouridine synthase B insig. 48 85
o Castellaniella sp019104865 MT123 ABCV34_RS07960 tRNA dihydrouridine synthase DusB cofit 48 85
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11525 tRNA dihydrouridine synthase DusB insig. 51 85
  Cupriavidus basilensis FW507-4G11 RR42_RS02730 tRNA-dihydrouridine synthase B insig. 48 84
o Acinetobacter radioresistens SK82 MPMX26_02127 tRNA-dihydrouridine synthase B insig. 44 85
  Paraburkholderia graminis OAS925 ABIE53_003489 tRNA-dihydrouridine synthase B insig. 47 85
o Herbaspirillum seropedicae SmR1 HSERO_RS02050 tRNA-dihydrouridine synthase B sig. 46 93
o Pseudomonas fluorescens FW300-N2E3 AO353_13660 tRNA-dihydrouridine synthase B sig. 47 93
o Pseudomonas fluorescens SBW25 PFLU_RS03025 tRNA dihydrouridine synthase DusB insig. 46 93
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03025 tRNA dihydrouridine synthase DusB strong 46 93
o Pseudomonas simiae WCS417 PS417_02950 tRNA-dihydrouridine synthase B sig. 46 93
o Rhodanobacter denitrificans MT42 LRK55_RS11875 tRNA dihydrouridine synthase DusB cofit 48 88
o Pseudomonas fluorescens FW300-N2C3 AO356_08215 tRNA-dihydrouridine synthase B strong 49 85
o Escherichia coli BL21 ECD_03118 tRNA-dihydrouridine synthase B strong 44 92
o Escherichia fergusonii Becca EFB2_00564 tRNA-dihydrouridine synthase B cofit 44 92
o Escherichia coli ECOR27 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli ECOR38 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli ECRC101 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli ECRC101 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli ECRC102 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli ECRC62 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB sig. 44 92
o Escherichia coli Nissle 1917 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB strong 44 92
o Escherichia coli BW25113 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) strong 44 92
o Pseudomonas sp. RS175 PFR28_05216 tRNA-dihydrouridine synthase B sig. 49 85
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) strong 49 85
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12140 tRNA dihydrouridine synthase DusB insig. 48 88
o Klebsiella michiganensis M5al BWI76_RS25565 tRNA dihydrouridine synthase DusB no data 44 91
o Pseudomonas syringae pv. syringae B728a Psyr_4404 tRNA-U20-dihydrouridine synthase insig. 44 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4404 tRNA-U20-dihydrouridine synthase insig. 44 96
o Vibrio cholerae E7946 ATCC 55056 CSW01_01495 tRNA dihydrouridine synthase DusB insig. 47 84
o Pseudomonas fluorescens GW456-L13 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) strong 49 85
o Rhodanobacter sp. FW510-T8 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB insig. 47 94
o Dickeya dianthicola 67-19 HGI48_RS01295 tRNA dihydrouridine synthase DusB insig. 44 91
o Shewanella amazonensis SB2B Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) strong 46 84
o Pectobacterium carotovorum WPP14 HER17_RS20235 tRNA dihydrouridine synthase DusB cofit 44 91
o Dickeya dianthicola ME23 DZA65_RS01355 tRNA dihydrouridine synthase DusB cofit 44 91
o Enterobacter sp. TBS_079 MPMX20_04169 tRNA-dihydrouridine synthase B strong 44 92
o Rahnella sp. WP5 EX31_RS12180 tRNA dihydrouridine synthase DusB cofit 44 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) sig. 48 85
o Dickeya dadantii 3937 DDA3937_RS01375 tRNA dihydrouridine synthase DusB strong 44 91
o Acidovorax sp. GW101-3H11 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) sig. 46 92
o Serratia liquefaciens MT49 IAI46_22775 tRNA dihydrouridine synthase DusB insig. 43 92
o Enterobacter asburiae PDN3 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family insig. 42 94
o Shewanella loihica PV-4 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) strong 45 84
o Pantoea sp. MT58 IAI47_02385 tRNA dihydrouridine synthase DusB sig. 44 91
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21125 tRNA dihydrouridine synthase DusB sig. 34 96
o Shewanella oneidensis MR-1 SO0394 conserved hypothetical protein (NCBI ptt file) strong 44 84
o Escherichia coli ECRC98 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB no data 44 83
o Escherichia coli ECRC99 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB no data 44 83
o Shewanella sp. ANA-3 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) strong 43 84
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22340 tRNA dihydrouridine synthase DusB insig. 35 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00445 putative tRNA-dihydrouridine synthase sig. 43 82
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17860 tRNA dihydrouridine synthase DusB cofit 36 90
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1531 putative TIM-barrel protein, nifR3 family strong 33 96
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB cofit 36 82
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) insig. 44 72
  Bacteroides thetaiotaomicron VPI-5482 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) strong 39 70
o Bacteroides stercoris CC31F HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB cofit 36 82
  Phocaeicola dorei CL03T12C01 ABI39_RS06125 tRNA dihydrouridine synthase DusB cofit 39 69
  Bacteroides ovatus ATCC 8483 BACOVA_02724 TIM-barrel protein, nifR3 family insig. 39 69
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB cofit 37 69
  Bifidobacterium breve UCC2003 BBR_RS17165 tRNA dihydrouridine synthase DusB sig. 34 95
  Mycobacterium tuberculosis H37Rv Rv0823c Possible transcriptional regulatory protein insig. 38 89
o Synechococcus elongatus PCC 7942 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 insig. 40 94
o Fusobacterium nucleatum SB010 HUW76_04330 tRNA-dihydrouridine synthase cofit 30 93
  Shewanella loihica PV-4 Shew_2242 dihydrouridine synthase, DuS (RefSeq) insig. 36 65
  Pseudomonas stutzeri RCH2 Psest_2595 tRNA-dihydrouridine synthase insig. 38 71