Conservation of cofitness between RR42_RS05910 and RR42_RS15090 in Cupriavidus basilensis FW507-4G11

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS05910 DNA repair protein 1.0 RR42_RS15090 DNA helicase 0.47 14
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05415 DNA repair protein RecN 0.76 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.63 UW163_RS08210 DNA repair protein RecN 0.76 UW163_RS09895 DNA-dependent helicase — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS01065 DNA repair protein RecN 0.77 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.63 RPSI07_RS11890 DNA repair protein RecN 0.76 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.62 RS_RS13275 DNA repair protein RecN 0.76 RS_RS11220 DNA-dependent helicase low > 80
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03060 DNA repair protein 0.64 HSERO_RS02160 DNA-dependent helicase low > 78
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26535 DNA repair protein RecN 0.71 QEN71_RS05110 3'-5' exonuclease — —
Paraburkholderia graminis OAS925 0.54 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.71 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04692 DNA replication and repair protein RecN 0.71 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS03560 DNA repair protein 0.71 BPHYT_RS13840 DNA-dependent helicase — —
Dechlorosoma suillum PS 0.46 Dsui_3072 DNA repair protein RecN 0.57 Dsui_1227 DNA/RNA helicase, superfamily I 0.77 12
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07470 DNA repair protein RecN 0.57 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3460 DNA repair protein RecN 0.61 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Variovorax sp. SCN45 0.41 GFF2357 DNA repair protein RecN 0.61 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF829 DNA repair protein RecN 0.61 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Rahnella sp. WP5 0.38 EX31_RS21760 DNA repair protein RecN 0.37 EX31_RS15175 DNA helicase II 0.32 16
Pseudomonas sp. S08-1 0.37 OH686_17050 DNA repair protein RecN 0.39 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pantoea sp. MT58 0.37 IAI47_04810 DNA repair protein RecN 0.38 IAI47_18390 DNA helicase II low > 76
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14775 DNA repair protein RecN 0.39 ECOLIN_RS21885 DNA helicase II low > 55
Escherichia coli BL21 0.37 ECD_02504 recombination and repair protein 0.39 ECD_03689 DNA-dependent ATPase I and helicase II — —
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.38 MPMX20_04463 DNA helicase II low > 85
Escherichia coli ECRC62 0.37 BNILDI_11620 recN DNA repair protein RecN 0.39 BNILDI_04995 uvrD DNA helicase II low > 75
Marinobacter adhaerens HP15 0.37 HP15_3084 DNA repair protein RecN 0.37 HP15_3403 UvrD/REP helicase 0.67 16
Escherichia coli BW25113 0.37 b2616 recN recombination and repair protein (NCBI) 0.39 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.68 1
Escherichia coli ECOR27 0.37 NOLOHH_12815 recN DNA repair protein RecN 0.39 NOLOHH_06540 uvrD DNA helicase II low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01091 DNA repair protein RecN 0.39 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli ECOR38 0.37 HEPCGN_20265 recN DNA repair protein RecN 0.38 HEPCGN_13115 uvrD DNA helicase II low > 87
Dickeya dadantii 3937 0.37 DDA3937_RS04325 DNA repair protein RecN 0.39 DDA3937_RS19880 DNA helicase II 0.56 15
Escherichia coli ECRC99 0.36 KEDOAH_07075 recN DNA repair protein RecN 0.39 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.36 EFB2_01277 DNA repair protein RecN 0.39 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECRC100 0.36 OKFHMN_21145 recN DNA repair protein RecN 0.39 OKFHMN_14410 uvrD DNA helicase II low > 80
Escherichia coli ECRC101 0.36 MCAODC_11670 recN DNA repair protein RecN 0.39 MCAODC_04915 uvrD DNA helicase II 0.61 10
Escherichia coli ECRC102 0.36 NIAGMN_18915 recN DNA repair protein RecN 0.39 NIAGMN_12165 uvrD DNA helicase II — —
Serratia liquefaciens MT49 0.36 IAI46_19635 DNA repair protein RecN 0.39 IAI46_00735 DNA helicase II low > 86
Escherichia coli ECRC98 0.36 JDDGAC_24810 recN DNA repair protein RecN 0.39 JDDGAC_18035 uvrD DNA helicase II low > 86
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0601 DNA replication and repair protein RecN 0.41 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.52 23
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2719 DNA repair protein RecN 0.39 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5106 DNA repair protein RecN 0.40 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.41 7
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1178 DNA repair protein RecN 0.39 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.34 9
Klebsiella michiganensis M5al 0.36 BWI76_RS21560 DNA repair protein RecN 0.38 BWI76_RS01220 DNA-dependent helicase II low > 92
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3370 DNA repair protein RecN 0.40 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.56 11
Shewanella amazonensis SB2B 0.36 Sama_1026 recombination and repair protein (RefSeq) 0.39 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.49 18
Dickeya dianthicola 67-19 0.36 HGI48_RS04320 DNA repair protein RecN 0.39 HGI48_RS20035 DNA helicase II low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.38 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.69 2
Pseudomonas sp. RS175 0.36 PFR28_00071 DNA repair protein RecN 0.40 PFR28_04523 DNA helicase II low > 88
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.39 DZA65_RS21080 DNA helicase II low > 75
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.39 HER17_RS01360 DNA helicase II low > 75
Erwinia tracheiphila SCR3 0.35 LU632_RS16985 recN DNA repair protein RecN 0.39 LU632_RS24125 uvrD DNA helicase II — —
Pseudomonas stutzeri RCH2 0.35 Psest_0962 DNA repair protein RecN 0.39 Psest_4098 Superfamily I DNA and RNA helicases 0.28 20
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07510 DNA repair protein RecN 0.40 AO356_11990 DNA helicase II 0.75 7
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25910 DNA repair protein RecN 0.40 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25910 DNA repair protein RecN 0.40 PFLU_RS29900 DNA helicase II 0.36 1
Shewanella oneidensis MR-1 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.39 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.57 4
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_05660 DNA repair protein RecN 0.40 AO353_10055 DNA helicase II 0.52 7
Shewanella sp. ANA-3 0.34 Shewana3_1104 recombination and repair protein (RefSeq) 0.39 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4197 DNA replication and repair protein RecN 0.40 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4197 DNA replication and repair protein RecN 0.40 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas putida KT2440 0.33 PP_4729 factor used in recombination and DNA repair 0.40 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.13 56
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.40 CSW01_01015 DNA helicase II 0.43 20
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS05665 DNA repair protein RecN 0.37 ABZR86_RS16965 DNA helicase II 0.92 2
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.36 OKGIIK_16775 DNA helicase low > 52
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.39 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17960 DNA repair protein RecN 0.37 LRK54_RS06850 DNA helicase II 0.59 2
Rhodanobacter denitrificans MT42 0.32 LRK55_RS17815 DNA repair protein RecN 0.37 LRK55_RS06595 DNA helicase II — —
Lysobacter sp. OAE881 0.32 ABIE51_RS11655 DNA repair protein RecN 0.40 ABIE51_RS01985 DNA helicase II 0.72 2
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3431.1 DNA repair protein RecN 0.38 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Alteromonas macleodii MIT1002 0.31 MIT1002_01443 Recombination protein N 0.40 MIT1002_00153 DNA helicase II low > 70
Sinorhizobium meliloti 1021 0.29 SMc01877 DNA repair protein 0.27 SMc01461 DNA helicase II protein 0.68 2
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.28 AMB_RS03725 DNA helicase II — —
Bosea sp. OAE506 0.28 ABIE41_RS12645 DNA repair protein RecN 0.29 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.39 54
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.28 Atu2057 DNA helicase II 0.44 8
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.27 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1026 DNA repair protein RecN 0.27 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.34 16
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.28 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.27 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.71 6
Azospirillum brasilense Sp245 0.26 AZOBR_RS12395 DNA repair protein RecN 0.28 AZOBR_RS12445 DNA helicase II — —
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.24 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.27 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.27 Rru_A1536 UvrD/REP helicase (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.26 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.24 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.26 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.28 TX73_018165 UvrD-helicase domain-containing protein low > 86
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.27 CCNA_01596 DNA helicase II 0.83 6
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.27 CCNA_01596 DNA helicase II low > 67
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00200 DNA repair protein RecN 0.26 BACOVA_02365 UvrD/REP helicase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS06580 DNA repair protein RecN 0.28 ABZR88_RS07840 ATP-dependent helicase — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c09720 DNA repair protein RecN 0.29 PGA1_c09450 DNA helicase II UvrD low > 62
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.25 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.28 Echvi_0292 Superfamily I DNA and RNA helicases — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) 0.27 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS14855 DNA repair protein RecN 0.28 CA265_RS12980 ATP-dependent DNA helicase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.27 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13235 DNA repair protein RecN 0.27 CA264_07795 ATP-dependent DNA helicase — —
Mycobacterium tuberculosis H37Rv 0.20 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.26 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.26 BBR_RS14985 ATP-dependent DNA helicase PcrA low > 34

Not shown: 4 genomes with orthologs for RR42_RS05910 only; 2 genomes with orthologs for RR42_RS15090 only