| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS05910 | | DNA repair protein | 1.0 | RR42_RS05995 | | excinuclease ABC subunit B | 0.71 | 2 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS05415 | | DNA repair protein RecN | 0.88 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | low | > 76 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS08210 | | DNA repair protein RecN | 0.88 | UW163_RS11690 | | excinuclease ABC subunit UvrB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS01065 | | DNA repair protein RecN | 0.87 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS11890 | | DNA repair protein RecN | 0.88 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS13275 | | DNA repair protein RecN | 0.87 | RS_RS05005 | | UvrABC system protein B | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS03060 | | DNA repair protein | 0.82 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.27 | 68 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS26535 | | DNA repair protein RecN | 0.84 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_000856 | | DNA repair protein RecN (Recombination protein N) | 0.83 | ABIE53_001645 | | excinuclease ABC subunit B | 0.39 | 5 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_04692 | | DNA replication and repair protein RecN | 0.83 | H281DRAFT_04973 | | Excinuclease ABC subunit B | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.53 | BPHYT_RS03560 | | DNA repair protein | 0.83 | BPHYT_RS06905 | | excinuclease ABC subunit B | low | > 109 |
| Dechlorosoma suillum PS | 0.46 | Dsui_3072 | | DNA repair protein RecN | 0.77 | Dsui_2434 | | excinuclease ABC, B subunit | 0.68 | 14 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS07470 | | DNA repair protein RecN | 0.70 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_3460 | | DNA repair protein RecN | 0.77 | Ac3H11_4114 | | Excinuclease ABC subunit B | low | > 79 |
| Variovorax sp. SCN45 | 0.41 | GFF2357 | | DNA repair protein RecN | 0.76 | GFF945 | | Excinuclease ABC subunit B | 0.71 | 18 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF829 | | DNA repair protein RecN | 0.77 | GFF4962 | | Excinuclease ABC subunit B | low | > 90 |
| Rahnella sp. WP5 | 0.38 | EX31_RS21760 | | DNA repair protein RecN | 0.63 | EX31_RS23720 | | excinuclease ABC subunit B | low | > 89 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_17050 | | DNA repair protein RecN | 0.65 | OH686_04580 | | excinuclease ABC subunit B | low | > 80 |
| Pantoea sp. MT58 | 0.37 | IAI47_04810 | | DNA repair protein RecN | 0.63 | IAI47_13505 | | excinuclease ABC subunit B | low | > 76 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS14775 | | DNA repair protein RecN | 0.62 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | low | > 55 |
| Enterobacter sp. TBS_079 | 0.37 | MPMX20_03486 | | DNA repair protein RecN | 0.62 | MPMX20_01408 | | UvrABC system protein B | 0.18 | 50 |
| Escherichia coli BL21 | 0.37 | ECD_02504 | | recombination and repair protein | 0.62 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | low | > 61 |
| Escherichia coli ECOR27 | 0.37 | NOLOHH_12815 | recN | DNA repair protein RecN | 0.62 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | low | > 75 |
| Escherichia coli ECRC62 | 0.37 | BNILDI_11620 | recN | DNA repair protein RecN | 0.62 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | low | > 75 |
| Escherichia coli BW25113 | 0.37 | b2616 | recN | recombination and repair protein (NCBI) | 0.62 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.40 | 20 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_3084 | | DNA repair protein RecN | 0.63 | HP15_1372 | | excinuclease ABC subunit B | 0.88 | 2 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_01091 | | DNA repair protein RecN | 0.62 | OHPLBJKB_02934 | | UvrABC system protein B | low | > 73 |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS04325 | | DNA repair protein RecN | 0.62 | DDA3937_RS08530 | | excinuclease ABC subunit B | low | > 74 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_20265 | recN | DNA repair protein RecN | 0.62 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.53 | 22 |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_18915 | recN | DNA repair protein RecN | 0.62 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC100 | 0.36 | OKFHMN_21145 | recN | DNA repair protein RecN | 0.62 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | low | > 80 |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_07075 | recN | DNA repair protein RecN | 0.62 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_11670 | recN | DNA repair protein RecN | 0.62 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | low | > 87 |
| Escherichia fergusonii Becca | 0.36 | EFB2_01277 | | DNA repair protein RecN | 0.62 | EFB2_03326 | | UvrABC system protein B | low | > 86 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_19635 | | DNA repair protein RecN | 0.64 | IAI46_06550 | | excinuclease ABC subunit B | low | > 86 |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_24810 | recN | DNA repair protein RecN | 0.62 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.67 | 59 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_0601 | | DNA replication and repair protein RecN | 0.66 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.61 | 11 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_2719 | | DNA repair protein RecN | 0.62 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_5106 | | DNA repair protein RecN | 0.66 | PfGW456L13_3959 | | Excinuclease ABC subunit B | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_3370 | | DNA repair protein RecN | 0.66 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.69 | 5 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS21560 | | DNA repair protein RecN | 0.62 | BWI76_RS08785 | | excinuclease ABC subunit B | low | > 92 |
| Pseudomonas fluorescens FW300-N1B4 | 0.36 | Pf1N1B4_1178 | | DNA repair protein RecN | 0.66 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.40 | 5 |
| Shewanella amazonensis SB2B | 0.36 | Sama_1026 | | recombination and repair protein (RefSeq) | 0.63 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.55 | 15 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF4162 | | DNA repair protein RecN | 0.62 | GFF675 | | Excinuclease ABC subunit B | 0.45 | 71 |
| Pseudomonas sp. RS175 | 0.36 | PFR28_00071 | | DNA repair protein RecN | 0.66 | PFR28_02837 | | UvrABC system protein B | low | > 88 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS04320 | | DNA repair protein RecN | 0.62 | HGI48_RS08695 | | excinuclease ABC subunit B | low | > 71 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS04235 | | DNA repair protein RecN | 0.62 | DZA65_RS08990 | | excinuclease ABC subunit B | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS17420 | | DNA repair protein RecN | 0.64 | HER17_RS13420 | | excinuclease ABC subunit B | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.35 | LU632_RS16985 | recN | DNA repair protein RecN | 0.63 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_07510 | | DNA repair protein RecN | 0.66 | AO356_21335 | | excinuclease ABC subunit B | 0.77 | 6 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_0962 | | DNA repair protein RecN | 0.66 | Psest_1296 | | excinuclease ABC, B subunit | 0.72 | 5 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS25910 | | DNA repair protein RecN | 0.66 | PFLU_RS20655 | | excinuclease ABC subunit B | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS25910 | | DNA repair protein RecN | 0.66 | PFLU_RS20655 | | excinuclease ABC subunit B | low | > 109 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_24070 | | recombination and repair protein | 0.66 | PS417_18685 | | excinuclease ABC subunit B | 0.62 | 2 |
| Shewanella oneidensis MR-1 | 0.34 | SO3462 | recN | DNA repair protein RecN (NCBI ptt file) | 0.64 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.39 | 18 |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_05660 | | DNA repair protein RecN | 0.66 | AO353_20545 | | excinuclease ABC subunit B | 0.62 | 5 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1104 | | recombination and repair protein (RefSeq) | 0.63 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_4197 | | DNA replication and repair protein RecN | 0.66 | Psyr_1974 | | Excinuclease ABC subunit B | 0.44 | 23 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_4197 | | DNA replication and repair protein RecN | 0.66 | Psyr_1974 | | Excinuclease ABC subunit B | 0.52 | 1 |
| Pseudomonas putida KT2440 | 0.33 | PP_4729 | | factor used in recombination and DNA repair | 0.66 | PP_1974 | | excinuclease UvrABC protein B | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_04395 | | DNA repair protein RecN | 0.62 | CSW01_05185 | | excinuclease ABC subunit UvrB | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS05665 | | DNA repair protein RecN | 0.61 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.81 | 6 |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_07340 | recN | DNA repair protein RecN | 0.63 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | low | > 52 |
| Shewanella loihica PV-4 | 0.32 | Shew_1196 | | recombination and repair protein (RefSeq) | 0.63 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.63 | 5 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS17815 | | DNA repair protein RecN | 0.63 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS17960 | | DNA repair protein RecN | 0.63 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00239 | | DNA repair protein RecN | 0.62 | MPMX26_02142 | | UvrABC system protein B | 0.54 | 2 |
| Lysobacter sp. OAE881 | 0.32 | ABIE51_RS11655 | | DNA repair protein RecN | 0.62 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.62 | 11 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.31 | Xcc-8004.3431.1 | | DNA repair protein RecN | 0.61 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_01443 | | Recombination protein N | 0.62 | MIT1002_01261 | | Excinuclease ABC subunit B | low | > 70 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS19520 | | DNA repair protein RecN | 0.56 | AMB_RS19255 | | excinuclease ABC subunit UvrB | — | — |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_01601 | | DNA repair protein RecN | 0.55 | MPMX19_01038 | | UvrABC system protein B | 0.58 | 16 |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_1026 | | DNA repair protein RecN | 0.53 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.31 | 23 |
| Phocaeicola dorei CL03T12C01 | 0.26 | ABI39_RS14500 | | DNA repair protein RecN | 0.47 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.26 | HMPREF1058_RS18225 | | DNA repair protein RecN | 0.47 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.63 | 35 |
| Azospirillum brasilense Sp245 | 0.26 | AZOBR_RS12395 | | DNA repair protein RecN | 0.54 | AZOBR_RS16420 | | excinuclease ABC subunit B | — | — |
| Fusobacterium nucleatum SB010 | 0.25 | HUW76_08055 | | DNA repair protein RecN | 0.51 | HUW76_02625 | | excinuclease ABC subunit UvrB | low | > 35 |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS02000 | | DNA repair protein RecN | 0.50 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | low | > 61 |
| Rhodospirillum rubrum S1H | 0.25 | Rru_A0940 | | DNA repair protein RecN (NCBI) | 0.56 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | — | — |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS10900 | | DNA repair protein RecN | 0.47 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.24 | BT1361 | | DNA repair protein recN (Recombination protein N) (NCBI ptt file) | 0.48 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.42 | 75 |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_02062 | | DNA repair protein recN | 0.55 | CCNA_03076 | | excinuclease ABC subunit B | low | > 67 |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_02062 | | DNA repair protein recN | 0.55 | CCNA_03076 | | excinuclease ABC subunit B | 0.73 | 11 |
| Bacteroides ovatus ATCC 8483 | 0.23 | BACOVA_00200 | | DNA repair protein RecN | 0.48 | BACOVA_03714 | | excinuclease ABC, B subunit | low | > 94 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.23 | ABZR88_RS06580 | | DNA repair protein RecN | 0.51 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | low | > 71 |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c09720 | | DNA repair protein RecN | 0.54 | PGA1_c26160 | | uvrABC system protein B | 0.50 | 4 |
| Synechococcus elongatus PCC 7942 | 0.23 | Synpcc7942_1779 | recN | DNA repair protein RecN | 0.56 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | low | > 38 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.23 | Echvi_2067 | | DNA repair protein RecN | 0.51 | Echvi_1215 | | excinuclease ABC, B subunit | 0.61 | 17 |
| Dinoroseobacter shibae DFL-12 | 0.22 | Dshi_2413 | | DNA repair protein RecN (RefSeq) | 0.54 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.57 | 1 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS14855 | | DNA repair protein RecN | 0.49 | CA265_RS19430 | | excinuclease ABC subunit B | 0.83 | 3 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.21 | A4249_RS02620 | | DNA repair protein RecN | 0.55 | A4249_RS00555 | | excinuclease ABC subunit UvrB | low | > 48 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.20 | CA264_13235 | | DNA repair protein RecN | 0.51 | CA264_19110 | | excinuclease ABC subunit B | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.20 | Rv1696 | | Probable DNA repair protein RecN (recombination protein N) | 0.50 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | low | > 58 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU2463 | recN | DNA repair protein RecN (TIGR) | 0.54 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.34 | 29 |
| Desulfovibrio vulgaris Miyazaki F | 0.17 | DvMF_0923 | | SMC domain protein (RefSeq) | 0.56 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | low | > 51 |
| Bifidobacterium breve UCC2003 | 0.15 | BBR_RS14030 | | DNA repair protein RecN | 0.48 | BBR_RS14285 | | excinuclease ABC subunit UvrB | 0.60 | 12 |
Not shown: 4 genomes with orthologs for RR42_RS05910 only; 3 genomes with orthologs for RR42_RS05995 only