Conservation of cofitness between Pf1N1B4_12 and Pf1N1B4_15 in Pseudomonas fluorescens FW300-N1B4

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 1.0 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 3
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_20635 3-isopropylmalate dehydrogenase 0.96 AO353_20620 isopropylmalate isomerase 0.98 4
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.96 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.89 15
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_21415 3-isopropylmalate dehydrogenase 0.96 AO356_21400 isopropylmalate isomerase 0.97 2
Pseudomonas simiae WCS417 0.96 PS417_18585 3-isopropylmalate dehydrogenase 0.94 PS417_18600 isopropylmalate isomerase 0.94 3
Pseudomonas fluorescens SBW25 0.96 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.94 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.92 2
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.94 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.97 1
Pseudomonas sp. RS175 0.96 PFR28_02821 3-isopropylmalate dehydrogenase 0.96 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.89 1
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.99 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.99 2
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_1985 3-isopropylmalate dehydrogenase 0.93 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.97 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_1985 3-isopropylmalate dehydrogenase 0.93 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.96 2
Pseudomonas putida KT2440 0.92 PP_1988 3-isopropylmalate dehydrogenase 0.91 PP_1985 3-isopropylmalate dehydratase large subunit 0.94 1
Pseudomonas stutzeri RCH2 0.88 Psest_2589 3-isopropylmalate dehydrogenase 0.86 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.95 1
Pseudomonas sp. S08-1 0.88 OH686_04470 3-isopropylmalate dehydrogenase 0.88 OH686_04480 3-isopropylmalate dehydratase large subunit 0.89 10
Xanthomonas campestris pv. campestris strain 8004 0.80 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.87 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.97 2
Acinetobacter radioresistens SK82 0.72 MPMX26_00348 3-isopropylmalate dehydrogenase 0.75 MPMX26_00345 3-isopropylmalate dehydratase large subunit 1.00 1
Marinobacter adhaerens HP15 0.70 HP15_1832 3-isopropylmalate dehydrogenase 0.79 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.97 1
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.79 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.97 1
Dechlorosoma suillum PS 0.69 Dsui_3198 3-isopropylmalate dehydrogenase 0.68 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.72 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.88 1
Paraburkholderia graminis OAS925 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.72 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.97 2
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.72 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.93 6
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.72 BPHYT_RS33915 isopropylmalate isomerase 0.97 1
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.71 HSERO_RS16515 isopropylmalate isomerase 0.96 2
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.72 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.66 3
Ralstonia solanacearum UW163 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase 0.72 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum GMI1000 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.72 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.42 36
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.73 RR42_RS14400 isopropylmalate isomerase 0.96 1
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.72 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.93 1
Ralstonia solanacearum PSI07 0.64 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.72 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.80 4
Variovorax sp. OAS795 0.63 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.71 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Variovorax sp. SCN45 0.63 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.70 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 1
Desulfovibrio vulgaris Miyazaki F 0.63 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.20 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.97 1
Castellaniella sp019104865 MT123 0.62 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.74 1
Acidovorax sp. GW101-3H11 0.62 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 2
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.97 2
Phaeobacter inhibens DSM 17395 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.61 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.98 1
Azospirillum sp. SherDot2 0.59 MPMX19_00607 3-isopropylmalate dehydrogenase 0.67 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.93 6
Dinoroseobacter shibae DFL-12 0.59 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.61 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Rhodospirillum rubrum S1H 0.59 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.68 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.95 1
Rhizobium sp. OAE497 0.59 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.99 1
Sinorhizobium meliloti 1021 0.59 SMc04405 3-isopropylmalate dehydrogenase 0.65 SMc03823 isopropylmalate isomerase large subunit 0.99 2
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.20 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.99 1
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.47 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Agrobacterium fabrum C58 0.58 Atu2791 3-isopropylmalate dehydrogenase 0.64 Atu2709 3-isopropylmalate dehydratase, large subunit 0.99 1
Magnetospirillum magneticum AMB-1 0.57 AMB_RS20570 3-isopropylmalate dehydrogenase 0.65 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.56 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.68 AZOBR_RS03545 isopropylmalate isomerase 0.89 2
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.59 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.97 11
Rhodopseudomonas palustris CGA009 0.55 TX73_001175 3-isopropylmalate dehydrogenase 0.63 TX73_001245 3-isopropylmalate dehydratase large subunit
Rahnella sp. WP5 0.55 EX31_RS03685 3-isopropylmalate dehydrogenase 0.63 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.99 1
Escherichia coli Nissle 1917 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.62 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.95 9
Escherichia coli ECRC99 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.62 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC102 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.62 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC98 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.62 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.99 3
Escherichia coli ECRC100 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.62 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.99 1
Escherichia fergusonii Becca 0.54 EFB2_03972 3-isopropylmalate dehydrogenase 0.62 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR38 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.62 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.98 2
Enterobacter sp. TBS_079 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.60 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.98 1
Escherichia coli ECRC101 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.62 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.98 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.61 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia coli BL21 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.62 ECD_00074 3-isopropylmalate dehydratase large subunit 0.98 4
Escherichia coli BW25113 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.62 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.99 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.62 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli ECRC62 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase 0.62 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.99 1
Escherichia coli ECOR27 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.62 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.97 13
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.97 1
Serratia liquefaciens MT49 0.54 IAI46_03350 3-isopropylmalate dehydrogenase 0.60 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.81 1
Bosea sp. OAE506 0.54 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.65 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Klebsiella michiganensis M5al 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.95 4
Shewanella amazonensis SB2B 0.53 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Shewanella sp. ANA-3 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.60 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.98 3
Shewanella oneidensis MR-1 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.60 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.99 3
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_12600 3-isopropylmalate dehydrogenase 0.59 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Shewanella loihica PV-4 0.52 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Dickeya dianthicola ME23 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.98 1
Dickeya dianthicola 67-19 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.89 4
Pectobacterium carotovorum WPP14 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.62 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.98 4
Dickeya dadantii 3937 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.62 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.97 1
Alteromonas macleodii MIT1002 0.52 MIT1002_00948 3-isopropylmalate dehydrogenase 0.59 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.99 1
Caulobacter crescentus NA1000 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.63 CCNA_00196 3-isopropylmalate dehydratase large subunit 1.00 1
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.63 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Pantoea sp. MT58 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.98 2
Erwinia tracheiphila SCR3 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.57 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.97 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.53 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Lysobacter sp. OAE881 0.48 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.95 40
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.52 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.96 2
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS09995 3-isopropylmalate dehydrogenase 0.48 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.99 11
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_2062 3-isopropylmalate dehydrogenase 0.50 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Rhodanobacter denitrificans MT42 0.46 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.48 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.47 19
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_09445 3-isopropylmalate dehydrogenase 0.54 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.98 1
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.98 1
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.98 1
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.94 1
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.50 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.96 1
Bacteroides ovatus ATCC 8483 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.49 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.99 1
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.93 1

Not shown: 0 genomes with orthologs for Pf1N1B4_12 only; 4 genomes with orthologs for Pf1N1B4_15 only