Conservation of cofitness between PP_1988 and PP_3511 in Pseudomonas putida KT2440

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1988 3-isopropylmalate dehydrogenase 1.0 PP_3511 Branched-chain-amino-acid aminotransferase 0.92 7
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 Pf6N2E2_477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 103
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.85 AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 104
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 PfGW456L13_3544 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 87
Pseudomonas simiae WCS417 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.87 PS417_17565 branched-chain amino acid aminotransferase low > 88
Pseudomonas fluorescens SBW25 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.87 PFLU_RS19375 branched-chain amino acid aminotransferase 0.46 88
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.87 PFLU_RS19375 branched-chain amino acid aminotransferase low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.86 Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 87
Pseudomonas sp. RS175 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.85 PFR28_02449 putative branched-chain-amino-acid aminotransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.85 AO353_26655 branched-chain amino acid aminotransferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.83 Psyr_1148 branched chain amino acid aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.83 Psyr_1148 branched chain amino acid aminotransferase apoenzyme 0.63 57
Pseudomonas stutzeri RCH2 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.11 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 67
Pseudomonas sp. S08-1 0.87 OH686_04470 3-isopropylmalate dehydrogenase 0.11 OH686_09695 branched-chain amino acid aminotransferase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.33 Xcc-8004.4199.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.69 62
Acinetobacter radioresistens SK82 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 0.10 MPMX26_00445 Branched-chain-amino-acid aminotransferase 0.99 5
Marinobacter adhaerens HP15 0.73 HP15_1832 3-isopropylmalate dehydrogenase 0.11 HP15_436 branched-chain-amino-acid aminotransferase — —
Dechlorosoma suillum PS 0.68 Dsui_3198 3-isopropylmalate dehydrogenase 0.14 Dsui_3339 branched-chain amino acid aminotransferase, group I — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.31 ABZR87_RS18540 branched-chain amino acid aminotransferase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.14 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme low > 103
Paraburkholderia graminis OAS925 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.14 ABIE53_003432 branched-chain amino acid aminotransferase low > 113
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.14 HSERO_RS03330 branched-chain amino acid aminotransferase low > 78
Variovorax sp. OAS795 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.13 ABID97_RS03790 branched-chain amino acid transaminase — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.33 RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 128
Ralstonia solanacearum GMI1000 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.29 RS_RS23675 branched-chain amino acid aminotransferase — —
Ralstonia solanacearum UW163 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase 0.29 UW163_RS18230 branched-chain amino acid aminotransferase — —
Variovorax sp. SCN45 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.12 GFF5079 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 127
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.29 RALBFv3_RS16875 branched-chain amino acid aminotransferase low > 76
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.14 BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 109
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.11 Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 79
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.15 QEN71_RS02410 branched-chain amino acid transaminase low > 153
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.12 RPSI07_RS21175 branched-chain amino acid transaminase low > 81
Castellaniella sp019104865 MT123 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.11 ABCV34_RS07930 branched-chain amino acid transaminase low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.11 GFF1835 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 90
Desulfovibrio vulgaris Miyazaki F 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.14 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq) low > 51
Phaeobacter inhibens DSM 17395 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.13 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE 0.80 33
Rhizobium sp. OAE497 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.30 ABIE40_RS11350 branched-chain amino acid aminotransferase low > 107
Sinorhizobium meliloti 1021 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.30 SMc02896 branched-chain amino acid aminotransferase low > 103
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.12 Synpcc7942_1029 ilvE branched-chain amino acid aminotransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.14 DVU3197 ilvE branched-chain amino acid aminotransferase (TIGR) 0.96 4
Rhodospirillum rubrum S1H 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.09 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) low > 58
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.31 Ga0059261_3811 branched-chain amino acid aminotransferase, group II 0.97 14
Enterobacter sp. TBS_079 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.17 MPMX20_04500 Branched-chain-amino-acid aminotransferase low > 85
Escherichia coli Nissle 1917 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.18 ECOLIN_RS21660 branched-chain-amino-acid transaminase low > 52
Escherichia coli ECRC98 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.18 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECOR38 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.18 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase low > 85
Escherichia coli ECRC99 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.18 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC101 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.18 MCAODC_05150 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC102 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.18 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.18 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) low > 78
Escherichia fergusonii Becca 0.54 EFB2_03972 3-isopropylmalate dehydrogenase 0.18 EFB2_04866 Branched-chain-amino-acid aminotransferase low > 86
Escherichia coli ECRC101 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.18 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli ECRC62 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase 0.18 BNILDI_04745 ilvE branched-chain-amino-acid transaminase — —
Escherichia coli BW25113 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.18 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.97 6
Escherichia coli BL21 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.18 ECD_03648 branched-chain amino acid aminotransferase 0.80 7
Escherichia coli ECOR27 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.18 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase low > 57
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.17 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I 0.93 7
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.18 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase low > 73
Shewanella loihica PV-4 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.27 Shew_0278 branched-chain amino acid aminotransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.17 IAI46_24350 branched-chain-amino-acid transaminase low > 86
Klebsiella michiganensis M5al 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.18 BWI76_RS00970 branched chain amino acid aminotransferase 0.53 84
Bosea sp. OAE506 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.10 ABIE41_RS11405 branched-chain amino acid aminotransferase — —
Rahnella sp. WP5 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.17 EX31_RS15000 branched-chain amino acid transaminase 0.91 64
Rhodopseudomonas palustris CGA009 0.53 TX73_001175 3-isopropylmalate dehydrogenase 0.29 TX73_022650 branched-chain amino acid aminotransferase — —
Shewanella sp. ANA-3 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.27 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_12600 3-isopropylmalate dehydrogenase 0.15 CSW01_00145 branched-chain-amino-acid transaminase low > 62
Shewanella oneidensis MR-1 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.27 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) 0.87 69
Shewanella amazonensis SB2B 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.28 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) low > 62
Dickeya dianthicola ME23 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.16 DZA65_RS21340 branched-chain amino acid transaminase 0.90 5
Dickeya dianthicola 67-19 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.16 HGI48_RS20300 branched-chain-amino-acid transaminase low > 71
Pectobacterium carotovorum WPP14 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.16 HER17_RS01070 branched-chain amino acid transaminase low > 75
Dickeya dadantii 3937 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.16 DDA3937_RS20160 branched-chain-amino-acid transaminase 0.68 40
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.11 CCNA_03024 branched-chain amino acid aminotransferase low > 67
Caulobacter crescentus NA1000 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.11 CCNA_03024 branched-chain amino acid aminotransferase low > 66
Alteromonas macleodii MIT1002 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.24 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 0.97 23
Pantoea sp. MT58 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.17 IAI47_01030 branched-chain amino acid transaminase 0.98 6
Erwinia tracheiphila SCR3 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.17 LU632_RS24405 branched-chain amino acid transaminase 0.97 2
Mucilaginibacter yixingensis YX-36 DSM 26809 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.27 ABZR88_RS22095 branched-chain amino acid aminotransferase — —
Lysobacter sp. OAE881 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.14 ABIE51_RS16505 branched-chain amino acid transaminase low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase 0.28 CA265_RS22650 branched chain amino acid aminotransferase 0.92 30
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_2062 3-isopropylmalate dehydrogenase 0.27 Echvi_2202 branched-chain amino acid aminotransferase, group II — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.15 LRK54_RS12020 branched-chain amino acid transaminase low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.15 LRK55_RS11755 branched-chain amino acid transaminase low > 63
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.43 HMPREF1078_RS07855 branched-chain amino acid aminotransferase low > 61
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.16 OKGIIK_11840 ilvE branched-chain amino acid transaminase low > 52
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.43 HMPREF1181_RS06865 branched-chain amino acid aminotransferase low > 56
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase 0.10 A4249_RS09820 branched-chain amino acid aminotransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.24 CA264_00175 branched chain amino acid aminotransferase low > 74
Bacteroides thetaiotaomicron VPI-5482 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.42 BT3892 branched-chain amino acid aminotransferase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.43 HMPREF1058_RS02220 branched-chain amino acid aminotransferase low > 67
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.43 ABI39_RS01415 branched-chain amino acid aminotransferase low > 72
Bacteroides ovatus ATCC 8483 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.42 BACOVA_01113 branched-chain-amino-acid transaminase 0.82 67
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.16 ABZR86_RS11580 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) low > 74
Mycobacterium tuberculosis H37Rv 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) 0.31 Rv2210c Branched-chain amino acid transaminase IlvE — —
Bifidobacterium breve UCC2003 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase 0.31 BBR_RS15210 branched-chain amino acid aminotransferase low > 34

Not shown: 8 genomes with orthologs for PP_1988 only; 0 genomes with orthologs for PP_3511 only