Conservation of cofitness between PP_1216 and PP_1468 in Pseudomonas putida KT2440

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_1468 Tyrosine recombinase XerD 0.38 10
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.87 Psyr_1286 tyrosine recombinase XerD subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.87 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.82 OH686_17750 tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.90 AO353_04365 recombinase XerD 0.23 43
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.90 PFR28_00331 Tyrosine recombinase XerD 0.41 5
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.91 PfGW456L13_1721 Tyrosine recombinase XerD 0.40 31
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.90 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.90 Pf1N1B4_3011 Tyrosine recombinase XerD — —
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.90 PS417_22895 tyrosine recombinase XerD 0.35 5
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.90 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.90 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.27 59
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.90 AO356_06385 recombinase XerD 0.52 5
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.81 Psest_3129 tyrosine recombinase XerD 0.21 45
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.59 CSW01_12250 site-specific tyrosine recombinase XerD 0.86 3
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.58 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.59 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.44 8
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.55 MIT1002_00786 Tyrosine recombinase XerD — —
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.58 EX31_RS13480 site-specific tyrosine recombinase XerD 0.64 3
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.60 Shew_0770 tyrosine recombinase XerD (RefSeq) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.60 EX28DRAFT_2945 tyrosine recombinase XerD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.60 OHPLBJKB_00821 Tyrosine recombinase XerD — —
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.60 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.44 14
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.60 EFB2_01007 Tyrosine recombinase XerD — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.60 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.60 ECD_02726 site-specific tyrosine recombinase — —
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.60 MPMX20_03753 Tyrosine recombinase XerD 0.47 1
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.60 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.60 BNILDI_10025 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.60 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.60 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.60 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.60 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.54 Sama_2739 integrase/recombinase XerD (RefSeq) — —
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.60 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.60 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.60 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.62 B158DRAFT_2265 tyrosine recombinase XerD 0.78 9
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.60 GFF2991 Tyrosine recombinase XerD — —
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.60 IAI47_03820 site-specific tyrosine recombinase XerD 0.37 1
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.59 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.61 HP15_762 site-specific tyrosine recombinase XerD — —
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.61 DDA3937_RS03300 site-specific tyrosine recombinase XerD — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.60 HER17_RS17890 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.60 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.61 IAI46_20730 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.60 HGI48_RS03440 site-specific tyrosine recombinase XerD — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.50 MPMX26_00169 Tyrosine recombinase XerD — —
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.55 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.66 1
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.53 Dsui_1217 tyrosine recombinase XerD — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.54 BPHYT_RS15950 tyrosine recombinase XerD — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.51 GFF2772 Site-specific tyrosine recombinase XerD 0.67 122
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.45 LRK54_RS04735 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.45 LRK55_RS04515 site-specific tyrosine recombinase XerD — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD low > 48
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.50 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.51 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.63 11
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.53 ABIE53_003361 integrase/recombinase XerD 0.40 5
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.50 RS_RS12755 tyrosine recombinase XerD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.49 GFF5461 Tyrosine recombinase XerD low > 90
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.46 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.50 RPSI07_RS12160 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.54 H281DRAFT_04126 integrase/recombinase XerD — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.50 RR42_RS03345 recombinase XerD low > 128
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.49 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.48 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.29 37
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.54 Ac3H11_302 Tyrosine recombinase XerD — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.52 HSERO_RS04265 tyrosine recombinase XerD 0.42 20
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.36 CA264_00850 site-specific tyrosine recombinase XerD — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.34 Echvi_1809 tyrosine recombinase XerD 0.29 38
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.38 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.26 Ga0059261_3595 Site-specific recombinase XerD — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.38 BACOVA_02123 tyrosine recombinase XerD — —
Azospirillum sp. SherDot2 0.30 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.36 MPMX19_02643 Tyrosine recombinase XerD — —
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.32 AZOBR_RS03240 recombinase XerD — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.36 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.33 TX73_002625 site-specific tyrosine recombinase XerD — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.32 AMB_RS19880 site-specific tyrosine recombinase XerD — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.33 ABZR88_RS10220 site-specific tyrosine recombinase XerD — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.36 BT2843 integrase (NCBI ptt file) — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.30 ABIE41_RS06100 site-specific tyrosine recombinase XerD — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.35 CA265_RS09520 site-specific tyrosine recombinase XerD 0.46 14
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.32 Atu3629 site-specific tyrosine recombinase XerD — —
Bifidobacterium breve UCC2003 0.27 BBR_RS15655 Holliday junction branch migration protein RuvA 0.36 BBR_RS16755 site-specific tyrosine recombinase XerD 0.73 7
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.37 ABI39_RS07000 site-specific tyrosine recombinase XerD — —
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.36 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.40 26
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.28 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.37 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2256 ruvA Holliday junction DNA helicase RuvA (TIGR) 0.38 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) 0.47 24
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.33 SMc00691 site-specific tyrosine recombinase XerD — —
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.37 DvMF_0359 tyrosine recombinase XerD (RefSeq) 0.52 4
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.30 PGA1_c14060 tyrosine recombinase XerD 0.51 2
Fusobacterium nucleatum SB010 0.24 HUW76_06655 Holliday junction branch migration protein RuvA 0.14 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.29 CCNA_03101 site-specific tyrosine recombinase XerD 0.39 26
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.29 CCNA_03101 site-specific tyrosine recombinase XerD — —

Not shown: 2 genomes with orthologs for PP_1216 only; 1 genomes with orthologs for PP_1468 only