Conservation of cofitness between IAI47_11310 and IAI47_05040 in Pantoea sp. MT58

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_11310 redox-regulated ATPase YchF 1.0 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.38 13
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.87 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Dickeya dianthicola 67-19 0.94 HGI48_RS10975 redox-regulated ATPase YchF 0.82 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Dickeya dianthicola ME23 0.94 DZA65_RS11435 redox-regulated ATPase YchF 0.82 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Erwinia tracheiphila SCR3 0.94 LU632_RS13950 ychF redox-regulated ATPase YchF 0.88 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dadantii 3937 0.94 DDA3937_RS11035 redox-regulated ATPase YchF 0.82 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.57 13
Escherichia coli ECRC99 0.93 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.86 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC101 0.93 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.86 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC101 0.93 MCAODC_21850 ychF redox-regulated ATPase YchF 0.86 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli BW25113 0.93 b1203 ychF translation-associated GTPase (NCBI) 0.86 b2517 yfgB predicted enzyme (NCBI)
Escherichia coli ECOR27 0.93 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.86 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC98 0.93 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.86 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC102 0.93 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.86 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.86 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 73
Escherichia coli ECOR38 0.93 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.86 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia fergusonii Becca 0.93 EFB2_02724 Ribosome-binding ATPase YchF 0.86 EFB2_01373 Dual-specificity RNA methyltransferase RlmN low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS07280 redox-regulated ATPase YchF 0.86 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli ECRC62 0.93 BNILDI_18805 ychF redox-regulated ATPase YchF 0.86 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Escherichia coli BL21 0.93 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.86 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent
Pectobacterium carotovorum WPP14 0.93 HER17_RS10445 redox-regulated ATPase YchF 0.85 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Serratia liquefaciens MT49 0.91 IAI46_10240 redox-regulated ATPase YchF 0.87 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Rahnella sp. WP5 0.90 EX31_RS07380 redox-regulated ATPase YchF 0.85 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0821 GTP-binding protein YchF 0.86 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase
Enterobacter sp. TBS_079 0.89 MPMX20_02645 Ribosome-binding ATPase YchF 0.86 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS17485 GTP-binding protein YchF 0.86 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
Shewanella amazonensis SB2B 0.81 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.70 Sama_2368 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.81 MIT1002_01504 Ribosome-binding ATPase YchF 0.71 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Shewanella oneidensis MR-1 0.80 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.72 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.72 Shewana3_1226 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.78 Shew_2919 translation-associated GTPase (RefSeq) 0.71 Shew_1287 hypothetical protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.52 HP15_1490 conserved hypothetical protein low > 73
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_10875 redox-regulated ATPase YchF 0.70 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 62
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS18365 GTP-binding protein 0.49 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Pseudomonas sp. S08-1 0.73 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 80
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2052 GTP-binding protein YchF 0.56 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase low > 40
Pseudomonas putida KT2440 0.73 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.52 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Acinetobacter radioresistens SK82 0.72 MPMX26_01861 Ribosome-binding ATPase YchF 0.53 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN low > 36
Pseudomonas sp. RS175 0.72 PFR28_03664 Ribosome-binding ATPase YchF 0.53 PFR28_00294 Dual-specificity RNA methyltransferase RlmN low > 88
Pseudomonas stutzeri RCH2 0.72 Psest_1103 GTP-binding protein YchF 0.53 Psest_1259 23S rRNA m2A2503 methyltransferase 0.25 13
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_14740 GTP-binding protein 0.54 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.35 70
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_16450 GTP-binding protein 0.54 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.28 64
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27600 redox-regulated ATPase YchF 0.49 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 153
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS22010 redox-regulated ATPase YchF 0.51 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_0941 Conserved hypothetical protein 92 0.54 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_0941 Conserved hypothetical protein 92 0.54 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.57 1
Pseudomonas simiae WCS417 0.71 PS417_03560 GTP-binding protein 0.54 PS417_23160 50S rRNA methyltransferase low > 88
Ralstonia sp. UNC404CL21Col 0.71 ABZR87_RS02220 redox-regulated ATPase YchF 0.48 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Ralstonia solanacearum GMI1000 0.71 RS_RS14520 redox-regulated ATPase YchF 0.49 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Paraburkholderia graminis OAS925 0.71 ABIE53_003650 GTP-binding protein YchF 0.49 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase 0.44 55
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_05705 hypothetical protein 0.49 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS17445 GTP-binding protein YchF 0.49 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN low > 109
Lysobacter sp. OAE881 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.47 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 62
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.54 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas fluorescens SBW25 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.54 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09215 redox-regulated ATPase YchF 0.44 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS06570 redox-regulated ATPase YchF 0.49 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum UW163 0.70 UW163_RS07055 redox-regulated ATPase YchF 0.49 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Ralstonia solanacearum PSI07 0.69 RPSI07_RS10660 redox-regulated ATPase YchF 0.49 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 81
Dechlorosoma suillum PS 0.69 Dsui_1039 GTP-binding protein YchF 0.49 Dsui_3145 23S rRNA m2A2503 methyltransferase
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS20405 GTP-binding protein YchF 0.49 HSERO_RS14810 50S rRNA methyltransferase
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.49 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 74
Variovorax sp. SCN45 0.69 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.46 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 127
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10565 Ribosome-binding ATPase YchF 0.52 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 52
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS03675 redox-regulated ATPase YchF 0.52 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS03425 redox-regulated ATPase YchF 0.52 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.68 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.46 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 90
Variovorax sp. OAS795 0.68 ABID97_RS24750 redox-regulated ATPase YchF 0.46 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.46 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_07495 GTP-binding protein YchF 0.34 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.39 44
Sinorhizobium meliloti 1021 0.59 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.37 SMc03831 hypothetical protein low > 103
Rhodopseudomonas palustris CGA009 0.59 TX73_022570 redox-regulated ATPase YchF 0.39 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 86
Phaeobacter inhibens DSM 17395 0.59 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.41 PGA1_c36240 ribosomal RNA large subunit methyltransferase N low > 62
Fusobacterium nucleatum SB010 0.58 HUW76_08540 redox-regulated ATPase YchF 0.30 HUW76_07445 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.86 25
Dinoroseobacter shibae DFL-12 0.58 Dshi_0954 GTP-binding protein YchF (RefSeq) 0.39 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS14155 redox-regulated ATPase YchF 0.32 ABZR88_RS00655 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.58 Echvi_2525 GTP-binding protein YchF 0.32 Echvi_0755 23S rRNA m2A2503 methyltransferase low > 79
Bacteroides ovatus ATCC 8483 0.57 BACOVA_02821 GTP-binding protein YchF 0.30 BACOVA_05204 23S rRNA m2A2503 methyltransferase
Bacteroides thetaiotaomicron VPI-5482 0.57 BT3116 GTP-binding protein (NCBI ptt file) 0.29 BT4372 conserved hypothetical protein (NCBI ptt file)
Magnetospirillum magneticum AMB-1 0.57 AMB_RS21985 redox-regulated ATPase YchF 0.38 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Azospirillum sp. SherDot2 0.57 MPMX19_01641 Ribosome-binding ATPase YchF 0.40 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN
Parabacteroides merdae CL09T00C40 0.57 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.27 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS13275 redox-regulated ATPase YchF 0.34 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 88
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0554 ychF translation-associated GTPase 0.27 Synpcc7942_1758 hypothetical protein low > 38
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS05450 redox-regulated ATPase YchF 0.29 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 3
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS11490 redox-regulated ATPase YchF 0.29 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 67
Azospirillum brasilense Sp245 0.56 AZOBR_RS30645 GTP-binding protein YchF 0.41 AZOBR_RS00800 50S rRNA methyltransferase
Rhizobium sp. OAE497 0.56 ABIE40_RS13100 redox-regulated ATPase YchF 0.37 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3227 GTP-binding protein YchF 0.38 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 68
Rhodospirillum rubrum S1H 0.56 Rru_A3748 hypothetical protein (NCBI) 0.41 Rru_A3329 hypothetical protein (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS09035 redox-regulated ATPase YchF 0.37 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 48
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.38 CCNA_00133 radical SAM family enzyme low > 67
Caulobacter crescentus NA1000 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.38 CCNA_00133 radical SAM family enzyme low > 66
Agrobacterium fabrum C58 0.55 Atu2233 GTP-binding protein 0.38 Atu2673 hypothetical protein
Bosea sp. OAE506 0.55 ABIE41_RS11295 redox-regulated ATPase YchF 0.37 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU1429 GTP-binding protein (TIGR) 0.34 DVU2904 radical SAM enzyme, Cfr family (TIGR) low > 55
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS02000 redox-regulated ATPase YchF 0.29 HMPREF1181_RS05775 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 56
Desulfovibrio vulgaris Miyazaki F 0.51 DvMF_0234 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.33 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) low > 51
Bifidobacterium breve UCC2003 0.47 BBR_RS14650 redox-regulated ATPase YchF 0.25 BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN

Not shown: 1 genomes with orthologs for IAI47_11310 only; 1 genomes with orthologs for IAI47_05040 only