Conservation of cofitness between IAI47_15115 and IAI47_03860 in Pantoea sp. MT58

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_15115 glutamate-5-semialdehyde dehydrogenase 1.0 IAI47_03860 diaminopimelate decarboxylase 0.95 4
Erwinia tracheiphila SCR3 0.77 LU632_RS01190 proA glutamate-5-semialdehyde dehydrogenase 0.78 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Klebsiella michiganensis M5al 0.77 BWI76_RS05835 gamma-glutamyl-phosphate reductase 0.72 BWI76_RS23360 diaminopimelate decarboxylase 0.81 33
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2650 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) 0.75 EX28DRAFT_2916 diaminopimelate decarboxylase 0.95 1
Enterobacter sp. TBS_079 0.77 MPMX20_00928 Gamma-glutamyl phosphate reductase 0.74 MPMX20_03705 Diaminopimelate decarboxylase 0.80 62
Dickeya dadantii 3937 0.76 DDA3937_RS16530 glutamate-5-semialdehyde dehydrogenase 0.74 DDA3937_RS17425 diaminopimelate decarboxylase 0.79 14
Escherichia coli ECRC101 0.75 OKFHMN_09670 proA glutamate-5-semialdehyde dehydrogenase 0.74 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC99 0.75 KEDOAH_18485 proA glutamate-5-semialdehyde dehydrogenase 0.74 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC98 0.75 JDDGAC_13295 proA glutamate-5-semialdehyde dehydrogenase 0.74 JDDGAC_23610 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC102 0.75 NIAGMN_07530 proA glutamate-5-semialdehyde dehydrogenase 0.74 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.75 MCAODC_00190 proA glutamate-5-semialdehyde dehydrogenase 0.74 MCAODC_10470 lysA diaminopimelate decarboxylase — —
Dickeya dianthicola ME23 0.75 DZA65_RS17690 glutamate-5-semialdehyde dehydrogenase 0.74 DZA65_RS18550 diaminopimelate decarboxylase 0.61 37
Escherichia coli BL21 0.75 ECD_00240 gamma-glutamylphosphate reductase 0.74 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 60
Pectobacterium carotovorum WPP14 0.74 HER17_RS04705 glutamate-5-semialdehyde dehydrogenase 0.74 HER17_RS03710 diaminopimelate decarboxylase 0.94 23
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4115 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.74 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Serratia liquefaciens MT49 0.73 IAI46_04435 glutamate-5-semialdehyde dehydrogenase 0.75 IAI46_20520 diaminopimelate decarboxylase 0.70 39
Escherichia coli Nissle 1917 0.73 ECOLIN_RS01830 glutamate-5-semialdehyde dehydrogenase 0.74 ECOLIN_RS15930 diaminopimelate decarboxylase low > 52
Dickeya dianthicola 67-19 0.73 HGI48_RS16600 glutamate-5-semialdehyde dehydrogenase 0.73 HGI48_RS17485 diaminopimelate decarboxylase 0.79 30
Escherichia coli BW25113 0.73 b0243 proA gamma-glutamyl phosphate reductase (NCBI) 0.74 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.88 48
Escherichia coli ECOR38 0.73 HEPCGN_07775 proA glutamate-5-semialdehyde dehydrogenase 0.74 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03397 Gamma-glutamyl phosphate reductase 0.74 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECOR27 0.73 NOLOHH_02045 proA glutamate-5-semialdehyde dehydrogenase 0.74 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 57
Escherichia coli ECRC62 0.73 BNILDI_00240 proA glutamate-5-semialdehyde dehydrogenase 0.74 BNILDI_10310 lysA diaminopimelate decarboxylase — —
Rahnella sp. WP5 0.72 EX31_RS20975 glutamate-5-semialdehyde dehydrogenase 0.72 EX31_RS13275 diaminopimelate decarboxylase 0.96 25
Escherichia fergusonii Becca 0.72 EFB2_03777 Gamma-glutamyl phosphate reductase 0.74 EFB2_01045 Diaminopimelate decarboxylase low > 86
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_11570 glutamate-5-semialdehyde dehydrogenase 0.17 CSW01_00635 diaminopimelate decarboxylase low > 62
Shewanella loihica PV-4 0.55 Shew_2847 proA gamma-glutamyl phosphate reductase (RefSeq) 0.16 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.97 19
Shewanella sp. ANA-3 0.54 Shewana3_0955 proA gamma-glutamyl phosphate reductase (RefSeq) 0.16 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.97 6
Shewanella oneidensis MR-1 0.52 SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) 0.16 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.99 2
Shewanella amazonensis SB2B 0.50 Sama_2515 proA gamma-glutamyl phosphate reductase (RefSeq) 0.16 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.96 13
Bifidobacterium breve UCC2003 0.44 BBR_RS14075 glutamate-5-semialdehyde dehydrogenase 0.12 BBR_RS19555 diaminopimelate decarboxylase 0.74 2
Pseudomonas sp. S08-1 0.43 OH686_09340 Gamma-glutamyl phosphate reductase 0.18 OH686_13800 diaminopimelate decarboxylase 0.67 64
Marinobacter adhaerens HP15 0.42 HP15_601 gamma-glutamyl phosphate reductase 0.16 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.42 Psest_0508 gamma-glutamyl phosphate reductase 0.19 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4369 glutamate-5-semialdehyde dehydrogenase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4369 glutamate-5-semialdehyde dehydrogenase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.42 PS417_24745 gamma-glutamyl phosphate reductase 0.19 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas putida KT2440 0.42 PP_4811 Gamma-glutamyl phosphate reductase 0.59 PP_2077 diaminopimelate decarboxylase low > 96
Alteromonas macleodii MIT1002 0.41 MIT1002_01885 Gamma-glutamyl phosphate reductase 0.13 MIT1002_00160 Diaminopimelate decarboxylase 0.77 70
Acinetobacter radioresistens SK82 0.41 MPMX26_00417 Gamma-glutamyl phosphate reductase 0.16 MPMX26_02232 Diaminopimelate decarboxylase 0.80 5
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2688 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.19 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Mycobacterium tuberculosis H37Rv 0.41 Rv2427c Probable gamma-glutamyl phosphate reductase protein ProA (GPR) (glutamate-5-semialdehyde dehydrogenase) (glutamyl-gamma-semialdehyde dehydrogenase) 0.11 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —
Variovorax sp. SCN45 0.41 GFF6326 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS26940 glutamate-5-semialdehyde dehydrogenase 0.16 QEN71_RS28080 diaminopimelate decarboxylase low > 153
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06495 gamma-glutamyl phosphate reductase 0.20 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas sp. RS175 0.40 PFR28_03872 Gamma-glutamyl phosphate reductase 0.19 PFR28_04375 Diaminopimelate decarboxylase — —
Dechlorosoma suillum PS 0.40 Dsui_1220 gamma-glutamyl phosphate reductase 0.19 Dsui_1182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_4993 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.19 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_15290 gamma-glutamyl phosphate reductase 0.19 AO356_12740 diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02965 gamma-glutamyl phosphate reductase 0.15 HSERO_RS00950 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.40 ABID97_RS04600 glutamate-5-semialdehyde dehydrogenase 0.17 ABID97_RS23305 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.19 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS01395 glutamate-5-semialdehyde dehydrogenase 0.17 ABZR87_RS02640 diaminopimelate decarboxylase low > 80
Castellaniella sp019104865 MT123 0.39 ABCV34_RS00845 glutamate-5-semialdehyde dehydrogenase 0.17 ABCV34_RS12685 diaminopimelate decarboxylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS22165 glutamate-5-semialdehyde dehydrogenase 0.15 ABZR88_RS10180 diaminopimelate decarboxylase — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS03320 glutamate-5-semialdehyde dehydrogenase 0.17 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.96 14
Acidovorax sp. GW101-3H11 0.39 Ac3H11_704 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Ralstonia solanacearum GMI1000 0.39 RS_RS13715 gamma-glutamyl-phosphate reductase 0.17 RS_RS14930 diaminopimelate decarboxylase — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS16770 gamma-glutamyl phosphate reductase 0.60 BPHYT_RS35090 diaminopimelate decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_06324 glutamate-5-semialdehyde dehydrogenase 0.16 H281DRAFT_05606 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.38 UW163_RS07800 glutamate-5-semialdehyde dehydrogenase 0.17 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS05825 glutamate-5-semialdehyde dehydrogenase 0.17 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_07720 gamma-glutamyl-phosphate reductase 0.18 CA264_02390 diaminopimelate decarboxylase low > 74
Rhodospirillum rubrum S1H 0.38 Rru_A1238 Gamma-glutamyl phosphate reductase GPR (NCBI) 0.20 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS20850 glutamate-5-semialdehyde dehydrogenase 0.17 CA265_RS09650 diaminopimelate decarboxylase 0.85 49
Ralstonia solanacearum PSI07 0.38 RPSI07_RS11475 glutamate-5-semialdehyde dehydrogenase 0.17 RPSI07_RS10250 diaminopimelate decarboxylase — —
Lysobacter sp. OAE881 0.38 ABIE51_RS13365 glutamate-5-semialdehyde dehydrogenase 0.24 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Paraburkholderia graminis OAS925 0.38 ABIE53_003523 glutamate-5-semialdehyde dehydrogenase 0.16 ABIE53_003749 diaminopimelate decarboxylase low > 113
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS02370 glutamate-5-semialdehyde dehydrogenase 0.24 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS02125 glutamate-5-semialdehyde dehydrogenase 0.24 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS08680 glutamate-5-semialdehyde dehydrogenase 0.23 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF2641 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.18 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Bacteroides thetaiotaomicron VPI-5482 0.37 BT3718 gamma-glutamyl phosphate reductase (NCBI ptt file) 0.16 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_0612 proA gamma-glutamyl phosphate reductase (RefSeq) 0.23 DvMF_1010 diaminopimelate decarboxylase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU1953 proA gamma-glutamyl phosphate reductase (TIGR) 0.23 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) low > 55
Magnetospirillum magneticum AMB-1 0.37 AMB_RS20640 glutamate-5-semialdehyde dehydrogenase 0.20 AMB_RS22725 diaminopimelate decarboxylase — —
Rhizobium sp. OAE497 0.37 ABIE40_RS18925 glutamate-5-semialdehyde dehydrogenase 0.19 ABIE40_RS17530 diaminopimelate decarboxylase 0.93 7
Bacteroides ovatus ATCC 8483 0.37 BACOVA_03534 glutamate-5-semialdehyde dehydrogenase 0.16 BACOVA_00215 diaminopimelate decarboxylase 0.97 4
Azospirillum sp. SherDot2 0.36 MPMX19_01943 Gamma-glutamyl phosphate reductase 0.19 MPMX19_05819 Diaminopimelate decarboxylase — —
Rhodopseudomonas palustris CGA009 0.36 TX73_000855 glutamate-5-semialdehyde dehydrogenase 0.20 TX73_024635 diaminopimelate decarboxylase — —
Sinorhizobium meliloti 1021 0.36 SMc03777 gamma-glutamyl phosphate reductase 0.19 SMc00723 diaminopimelate DAP decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS17530 gamma-glutamyl phosphate reductase 0.17 RR42_RS19050 diaminopimelate decarboxylase — —
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS10655 glutamate-5-semialdehyde dehydrogenase 0.17 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.94 40
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_2265 proA glutamate-5-semialdehyde dehydrogenase 0.12 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_09415 proA glutamate-5-semialdehyde dehydrogenase 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Dinoroseobacter shibae DFL-12 0.35 Dshi_1469 gamma-glutamyl phosphate reductase (RefSeq) 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS02875 glutamate-5-semialdehyde dehydrogenase 0.16 ABI39_RS19950 diaminopimelate decarboxylase 0.65 57
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS08645 glutamate-5-semialdehyde dehydrogenase 0.16 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Phaeobacter inhibens DSM 17395 0.34 PGA1_c15520 gamma-glutamyl phosphate reductase ProA 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Caulobacter crescentus NA1000 0.34 CCNA_03543 gamma-glutamyl phosphate reductase 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Azospirillum brasilense Sp245 0.34 AZOBR_RS04075 gamma-glutamyl phosphate reductase 0.19 AZOBR_RS16945 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03543 gamma-glutamyl phosphate reductase 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Agrobacterium fabrum C58 0.33 Atu2779 gamma-glutamyl phosphate reductase 0.19 Atu3601 diaminopimelate decarboxylase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS16120 glutamate-5-semialdehyde dehydrogenase 0.20 A4249_RS12545 diaminopimelate decarboxylase 0.99 25
Bosea sp. OAE506 0.32 ABIE41_RS07580 glutamate-5-semialdehyde dehydrogenase 0.21 ABIE41_RS08740 diaminopimelate decarboxylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2633 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) 0.23 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.86 28

Not shown: 3 genomes with orthologs for IAI47_15115 only; 2 genomes with orthologs for IAI47_03860 only