Conservation of cofitness between IAI47_04220 and IAI47_03860 in Pantoea sp. MT58

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_04220 5'/3'-nucleotidase SurE 1.0 IAI47_03860 diaminopimelate decarboxylase 0.51 15
Enterobacter sp. TBS_079 0.88 MPMX20_03630 5'/3'-nucleotidase SurE 0.74 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2840 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.75 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_00989 '5'/3'-nucleotidase SurE' transl_table=11 0.74 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECRC101 0.88 MCAODC_11005 surE 5'/3'-nucleotidase SurE 0.74 MCAODC_10470 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC99 0.88 KEDOAH_07660 surE 5'/3'-nucleotidase SurE 0.74 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC98 0.88 JDDGAC_24145 surE 5'/3'-nucleotidase SurE 0.74 JDDGAC_23610 lysA diaminopimelate decarboxylase — —
Escherichia coli ECOR27 0.88 NOLOHH_12295 surE 5'/3'-nucleotidase SurE 0.74 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 57
Escherichia coli BL21 0.88 ECD_02594 broad specificity 5'(3')-nucleotidase and polyphosphatase 0.74 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 60
Escherichia coli BW25113 0.88 b2744 surE acid phosphatase (NCBI) 0.74 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECRC102 0.88 NIAGMN_18250 surE 5'/3'-nucleotidase SurE 0.74 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.88 OKFHMN_20480 surE 5'/3'-nucleotidase SurE 0.74 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia fergusonii Becca 0.88 EFB2_01166 5'/3'-nucleotidase SurE 0.74 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli Nissle 1917 0.88 ECOLIN_RS15345 5'/3'-nucleotidase SurE 0.74 ECOLIN_RS15930 diaminopimelate decarboxylase low > 52
Escherichia coli ECRC62 0.88 BNILDI_10845 surE 5'/3'-nucleotidase SurE 0.74 BNILDI_10310 lysA diaminopimelate decarboxylase — —
Erwinia tracheiphila SCR3 0.88 LU632_RS06465 surE 5'/3'-nucleotidase SurE 0.78 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Klebsiella michiganensis M5al 0.87 BWI76_RS22660 5'/3'-nucleotidase SurE 0.72 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Escherichia coli ECOR38 0.87 HEPCGN_19660 surE 5'/3'-nucleotidase SurE 0.74 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF4792 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.74 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Serratia liquefaciens MT49 0.83 IAI46_03775 5'/3'-nucleotidase SurE 0.75 IAI46_20520 diaminopimelate decarboxylase low > 86
Rahnella sp. WP5 0.78 EX31_RS07840 5'/3'-nucleotidase SurE 0.72 EX31_RS13275 diaminopimelate decarboxylase low > 89
Shewanella amazonensis SB2B 0.56 Sama_1041 surE stationary phase survival protein SurE (RefSeq) 0.16 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.71 47
Shewanella sp. ANA-3 0.56 Shewana3_1121 surE stationary phase survival protein SurE (RefSeq) 0.16 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.66 50
Shewanella oneidensis MR-1 0.55 SO3435 surE stationary-phase survival protein SurE (NCBI ptt file) 0.16 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.87 19
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_02820 5'-nucleotidase SurE 0.17 CSW01_00635 diaminopimelate decarboxylase low > 62
Shewanella loihica PV-4 0.53 Shew_1210 stationary-phase survival protein SurE (RefSeq) 0.16 Shew_0322 diaminopimelate decarboxylase (RefSeq) low > 60
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_08115 surE 5'/3'-nucleotidase SurE 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Rhodanobacter denitrificans MT42 0.53 LRK55_RS16375 5'/3'-nucleotidase SurE 0.24 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS16650 5'/3'-nucleotidase SurE 0.24 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS06595 5'/3'-nucleotidase SurE 0.23 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Lysobacter sp. OAE881 0.49 ABIE51_RS06485 5'/3'-nucleotidase SurE 0.24 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Marinobacter adhaerens HP15 0.49 HP15_1279 stationary-phase survival protein SurE 0.16 HP15_247 diaminopimelate decarboxylase — —
Dechlorosoma suillum PS 0.46 Dsui_1968 5''/3''-nucleotidase SurE 0.19 Dsui_1182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.45 OH686_18170 5'/3'-nucleotidase SurE 0.18 OH686_13800 diaminopimelate decarboxylase low > 80
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03030 5'/3'-nucleotidase SurE 0.17 ABCV34_RS12685 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.44 Psest_2810 5'/3'-nucleotidase SurE 0.19 Psest_3764 diaminopimelate decarboxylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF3879 5-nucleotidase SurE (EC 3.1.3.5) 0.18 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_16600 stationary phase survival protein SurE 0.20 AO353_09035 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS22255 5'/3'-nucleotidase SurE 0.16 QEN71_RS28080 diaminopimelate decarboxylase low > 153
Pseudomonas putida KT2440 0.43 PP_1620 5'(3')-nucleotidase and polyphosphatase 0.59 PP_2077 diaminopimelate decarboxylase low > 96
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS14845 stationary phase survival protein SurE 0.15 HSERO_RS00950 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_3112 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.19 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Variovorax sp. OAS795 0.43 ABID97_RS10715 5'/3'-nucleotidase SurE 0.17 ABID97_RS23305 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS06415 5'/3'-nucleotidase SurE 0.19 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS06415 5'/3'-nucleotidase SurE 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.43 PS417_06350 stationary phase survival protein SurE 0.19 PS417_27580 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_002054 5'-nucleotidase 0.16 ABIE53_003749 diaminopimelate decarboxylase low > 113
Variovorax sp. SCN45 0.43 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS09100 stationary phase survival protein SurE 0.60 BPHYT_RS35090 diaminopimelate decarboxylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00840 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase 0.16 H281DRAFT_05606 diaminopimelate decarboxylase — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS18155 5'/3'-nucleotidase SurE 0.17 RPSI07_RS10250 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_4678 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.19 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS10860 5'/3'-nucleotidase SurE 0.17 ABZR87_RS02640 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15220 5'/3'-nucleotidase SurE 0.17 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.41 RS_RS06030 5'-nucleotidase SurE 0.17 RS_RS14930 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.41 UW163_RS12685 5'/3'-nucleotidase SurE 0.17 UW163_RS06625 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13200 stationary phase survival protein SurE 0.17 RR42_RS19050 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3040 5-nucleotidase SurE (EC 3.1.3.5) 0.19 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas sp. RS175 0.40 PFR28_00424 '5'-nucleotidase SurE' transl_table=11 0.19 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_05900 stationary phase survival protein SurE 0.19 AO356_12740 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1784 5-nucleotidase SurE (EC 3.1.3.5) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Acinetobacter radioresistens SK82 0.37 MPMX26_01054 5'-nucleotidase SurE 0.16 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Azospirillum brasilense Sp245 0.36 AZOBR_RS15460 5'-nucleotidase 0.19 AZOBR_RS16945 diaminopimelate decarboxylase — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS12675 5'-nucleotidase SurE 0.20 AMB_RS22725 diaminopimelate decarboxylase — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2063 surE stationary phase survival protein SurE 0.12 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS04645 5'/3'-nucleotidase SurE 0.20 A4249_RS12545 diaminopimelate decarboxylase low > 48
Rhodospirillum rubrum S1H 0.33 Rru_A1769 Acid phosphatase (NCBI) 0.20 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Caulobacter crescentus NA1000 0.33 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.21 CCNA_02296 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.33 MPMX19_01169 5'-nucleotidase SurE 0.19 MPMX19_05819 Diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_0021 stationary-phase survival protein SurE (RefSeq) 0.23 DvMF_1010 diaminopimelate decarboxylase (RefSeq) low > 51
Rhodopseudomonas palustris CGA009 0.32 TX73_014710 5'/3'-nucleotidase SurE 0.20 TX73_024635 diaminopimelate decarboxylase — —
Sinorhizobium meliloti 1021 0.31 SMc02063 stationary phase survival protein SurE 0.19 SMc00723 diaminopimelate DAP decarboxylase — —
Agrobacterium fabrum C58 0.31 Atu1702 stationary-phase survival protein 0.19 Atu3601 diaminopimelate decarboxylase — —
Rhizobium sp. OAE497 0.31 ABIE40_RS08480 5'/3'-nucleotidase SurE 0.19 ABIE40_RS17530 diaminopimelate decarboxylase low > 107
Bosea sp. OAE506 0.31 ABIE41_RS15015 5'/3'-nucleotidase SurE 0.21 ABIE41_RS08740 diaminopimelate decarboxylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS03555 5'/3'-nucleotidase SurE 0.15 ABZR88_RS10180 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.29 DVU2142 surE stationary-phase survival protein SurE (TIGR) 0.23 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) low > 55
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS09735 5'/3'-nucleotidase SurE 0.16 ABI39_RS19950 diaminopimelate decarboxylase low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS16310 5'/3'-nucleotidase SurE 0.17 CA265_RS09650 diaminopimelate decarboxylase low > 88
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS14085 5'/3'-nucleotidase SurE 0.16 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS04545 5'/3'-nucleotidase SurE 0.17 HMPREF1078_RS13545 diaminopimelate decarboxylase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_12185 5'/3'-nucleotidase SurE 0.18 CA264_02390 diaminopimelate decarboxylase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_3388 5'/3'-nucleotidase SurE 0.23 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 79
Methanococcus maripaludis S2 0.24 MMP_RS05435 5'/3'-nucleotidase SurE 0.17 MMP_RS06180 diaminopimelate decarboxylase — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_04822 5'/3'-nucleotidase SurE 0.16 BACOVA_00215 diaminopimelate decarboxylase low > 94
Methanococcus maripaludis JJ 0.24 MMJJ_RS08930 5'/3'-nucleotidase SurE 0.17 MMJJ_RS08170 diaminopimelate decarboxylase low > 28
Bacteroides thetaiotaomicron VPI-5482 0.24 BT4003 stationary-phase survival protein SurE (NCBI ptt file) 0.16 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS09175 5'/3'-nucleotidase SurE 0.17 HMPREF1181_RS11050 diaminopimelate decarboxylase low > 56
Dinoroseobacter shibae DFL-12 0.23 Dshi_2136 stationary-phase survival protein SurE (RefSeq) 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c10770 5'-nucleotidase SurE 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA — —

Not shown: 3 genomes with orthologs for IAI47_04220 only; 7 genomes with orthologs for IAI47_03860 only