Conservation of cofitness between HSERO_RS01815 and HSERO_RS16500 in Herbaspirillum seropedicae SmR1

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01815 gamma-glutamyl kinase 1.0 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.87 5
Dechlorosoma suillum PS 0.71 Dsui_0166 glutamate 5-kinase 0.69 Dsui_3198 3-isopropylmalate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS17940 gamma-glutamyl kinase 0.91 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27270 glutamate 5-kinase 0.86 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.78 61
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS06145 glutamate 5-kinase 0.88 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.59 35
Ralstonia solanacearum UW163 0.70 UW163_RS07480 glutamate 5-kinase 0.88 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS01810 glutamate 5-kinase 0.87 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.87 3
Paraburkholderia graminis OAS925 0.70 ABIE53_003588 glutamate 5-kinase 0.86 ABIE53_004804 3-isopropylmalate dehydrogenase 0.78 6
Paraburkholderia bryophila 376MFSha3.1 0.70 H281DRAFT_06264 glutamate 5-kinase 0.86 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.58 15
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS17110 glutamate 5-kinase 0.85 BPHYT_RS33900 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum PSI07 0.69 RPSI07_RS11095 glutamate 5-kinase 0.87 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.66 15
Ralstonia solanacearum GMI1000 0.69 RS_RS14095 glutamate 5-kinase 0.87 RS_RS09990 3-isopropylmalate dehydrogenase 0.55 1
Variovorax sp. OAS795 0.67 ABID97_RS23400 glutamate 5-kinase 0.81 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Variovorax sp. SCN45 0.65 GFF2515 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4771 Glutamate 5-kinase (EC 2.7.2.11) 0.82 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.83 17
Castellaniella sp019104865 MT123 0.65 ABCV34_RS10800 glutamate 5-kinase 0.76 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.49 6
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.80 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 90
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.64 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS25360 glutamate 5-kinase 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.53 22
Pseudomonas fluorescens SBW25 0.60 PFLU_RS25360 glutamate 5-kinase 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.57 17
Pseudomonas simiae WCS417 0.60 PS417_23545 gamma-glutamyl kinase 0.65 PS417_18585 3-isopropylmalate dehydrogenase 0.66 14
Pseudomonas sp. S08-1 0.59 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA 0.62 OH686_04470 3-isopropylmalate dehydrogenase 0.67 43
Pseudomonas sp. RS175 0.58 PFR28_03769 Glutamate 5-kinase 0.64 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0704 glutamate 5-kinase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.87 18
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.65 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 103
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0704 glutamate 5-kinase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.87 11
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_15815 gamma-glutamyl kinase 0.65 AO356_21415 3-isopropylmalate dehydrogenase 0.66 28
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.93 8
Pseudomonas putida KT2440 0.57 PP_0691 Glutamate 5-kinase 0.64 PP_1988 3-isopropylmalate dehydrogenase 0.40 18
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_14115 gamma-glutamyl kinase 0.64 AO353_20635 3-isopropylmalate dehydrogenase 0.77 12
Pseudomonas stutzeri RCH2 0.57 Psest_3384 glutamate 5-kinase 0.63 Psest_2589 3-isopropylmalate dehydrogenase 0.79 18
Marinobacter adhaerens HP15 0.54 HP15_508 gamma-glutamyl kinase 0.63 HP15_1832 3-isopropylmalate dehydrogenase — —
Acinetobacter radioresistens SK82 0.48 MPMX26_02135 Glutamate 5-kinase 0.61 MPMX26_00348 3-isopropylmalate dehydrogenase 0.75 31
Shewanella amazonensis SB2B 0.41 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.45 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.93 23
Shewanella loihica PV-4 0.41 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.46 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.99 5
Magnetospirillum magneticum AMB-1 0.40 AMB_RS20630 glutamate 5-kinase 0.51 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_2197 proB gamma-glutamyl kinase 0.54 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.40 MPMX19_01933 Glutamate 5-kinase 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Klebsiella michiganensis M5al 0.40 BWI76_RS05840 glutamate 5-kinase 0.49 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.88 20
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2651 glutamate 5-kinase 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.83 24
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.49 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli ECRC100 0.39 OKFHMN_09675 proB Glutamate 5-kinase 0.48 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.97 7
Escherichia fergusonii Becca 0.39 EFB2_03778 Glutamate 5-kinase 0.48 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECRC99 0.39 KEDOAH_18480 proB Glutamate 5-kinase 0.48 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli BL21 0.39 ECD_00239 gamma-glutamate kinase 0.48 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.90 6
Escherichia coli ECOR38 0.39 HEPCGN_07780 proB Glutamate 5-kinase 0.48 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.94 35
Escherichia coli ECRC62 0.39 BNILDI_00245 proB Glutamate 5-kinase 0.48 BNILDI_08545 leuA 2-isopropylmalate synthase 0.97 16
Escherichia coli ECOR27 0.39 NOLOHH_02050 proB Glutamate 5-kinase 0.48 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.97 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03398 Glutamate 5-kinase 0.48 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Enterobacter sp. TBS_079 0.39 MPMX20_00927 Glutamate 5-kinase 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.89 36
Escherichia coli ECRC101 0.39 MCAODC_00195 proB Glutamate 5-kinase 0.48 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.90 20
Escherichia coli ECRC102 0.39 NIAGMN_07535 proB Glutamate 5-kinase 0.48 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS01825 glutamate 5-kinase 0.48 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.90 12
Escherichia coli ECRC98 0.39 JDDGAC_13300 proB Glutamate 5-kinase 0.48 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.85 32
Escherichia coli BW25113 0.39 b0242 proB gamma-glutamyl kinase (NCBI) 0.48 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.95 7
Rahnella sp. WP5 0.39 EX31_RS20980 glutamate 5-kinase 0.47 EX31_RS03685 3-isopropylmalate dehydrogenase 0.98 6
Serratia liquefaciens MT49 0.38 IAI46_04430 glutamate 5-kinase 0.49 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Pantoea sp. MT58 0.38 IAI47_15120 glutamate 5-kinase 0.47 IAI47_16005 3-isopropylmalate dehydrogenase 0.91 20
Agrobacterium fabrum C58 0.38 Atu2780 gamma-glutamyl kinase 0.49 Atu2791 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.38 SMc03776 gamma-glutamyl kinase 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.89 21
Shewanella oneidensis MR-1 0.37 SO1121 proB glutamate 5-kinase (NCBI ptt file) 0.46 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.98 11
Azospirillum brasilense Sp245 0.37 AZOBR_RS04095 glutamate 5-kinase 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_1377 gamma-glutamyl kinase (RefSeq) 0.55 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.94 17
Rhizobium sp. OAE497 0.37 ABIE40_RS18920 glutamate 5-kinase 0.51 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.90 24
Erwinia tracheiphila SCR3 0.37 LU632_RS01185 proB glutamate 5-kinase 0.45 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase low > 74
Phaeobacter inhibens DSM 17395 0.37 PGA1_c15510 glutamate 5-kinase ProB 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.82 6
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_11575 glutamate 5-kinase 0.48 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Dinoroseobacter shibae DFL-12 0.37 Dshi_1467 glutamate 5-kinase (RefSeq) 0.53 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Rhodospirillum rubrum S1H 0.37 Rru_A1239 Glutamate 5-kinase, ProB-related (NCBI) 0.52 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.80 4
Shewanella sp. ANA-3 0.37 Shewana3_0954 gamma-glutamyl kinase (RefSeq) 0.45 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.94 21
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0930 proB glutamate 5-kinase (TIGR) 0.53 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.87 12
Rhodopseudomonas palustris CGA009 0.36 TX73_000850 glutamate 5-kinase 0.48 TX73_001175 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.36 DDA3937_RS16535 glutamate 5-kinase 0.48 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Dickeya dianthicola ME23 0.36 DZA65_RS17695 glutamate 5-kinase 0.48 DZA65_RS19205 3-isopropylmalate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.36 HGI48_RS16605 glutamate 5-kinase 0.48 HGI48_RS18060 3-isopropylmalate dehydrogenase low > 71
Rhodanobacter denitrificans MT42 0.35 LRK55_RS02130 glutamate 5-kinase 0.38 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS02375 glutamate 5-kinase 0.38 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.85 4
Pectobacterium carotovorum WPP14 0.35 HER17_RS04700 glutamate 5-kinase 0.47 HER17_RS03080 3-isopropylmalate dehydrogenase 0.90 33
Caulobacter crescentus NA1000 0.35 CCNA_00316 glutamate 5-kinase 0.49 CCNA_00193 3-isopropylmalate dehydrogenase 0.90 27
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00316 glutamate 5-kinase 0.49 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Bosea sp. OAE506 0.35 ABIE41_RS07585 glutamate 5-kinase 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_09420 proB glutamate 5-kinase 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Alteromonas macleodii MIT1002 0.33 MIT1002_04056 Glutamate 5-kinase 0.48 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Lysobacter sp. OAE881 0.32 ABIE51_RS13370 glutamate 5-kinase 0.43 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.85 5
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2326.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.61 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.55 57
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS08685 glutamate 5-kinase 0.37 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.83 50
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS22170 glutamate 5-kinase 0.45 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_4033 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.42 Echvi_2062 3-isopropylmalate dehydrogenase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS16125 glutamate 5-kinase 0.39 A4249_RS09995 3-isopropylmalate dehydrogenase 0.99 8
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS20855 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.46 CA265_RS15850 3-isopropylmalate dehydrogenase 0.91 29
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS08650 glutamate 5-kinase 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.81 39
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_3512 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.61 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.89 28
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_07725 glutamate 5-kinase 0.41 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Bacteroides thetaiotaomicron VPI-5482 0.27 BT3719 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.38 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.82 38
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS02880 glutamate 5-kinase 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.83 26
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS10650 glutamate 5-kinase 0.39 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.93 46
Bacteroides ovatus ATCC 8483 0.26 BACOVA_03537 glutamate 5-kinase 0.38 BACOVA_04600 3-isopropylmalate dehydrogenase 0.95 8
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS03325 glutamate 5-kinase 0.38 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.91 30

Not shown: 2 genomes with orthologs for HSERO_RS01815 only; 1 genomes with orthologs for HSERO_RS16500 only