| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS03350 | | hypothetical protein | 1.0 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.26 | 9 |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS08070 | | pyruvate kinase | 0.46 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.73 | BPHYT_RS16265 | | hypothetical protein | 0.49 | BPHYT_RS16855 | | 16S rRNA methyltransferase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.73 | H281DRAFT_04189 | | pyruvate kinase | 0.48 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_003427 | | pyruvate kinase | 0.49 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.73 | RPSI07_RS21150 | | pyruvate kinase | 0.46 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.72 | RS_RS02865 | | pyruvate kinase | 0.45 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.72 | RALBFv3_RS12180 | | pyruvate kinase | 0.46 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.72 | UW163_RS01430 | | pyruvate kinase | 0.46 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.72 | QEN71_RS02430 | | pyruvate kinase | 0.45 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.72 | RR42_RS03210 | | pyruvate kinase | 0.47 | RR42_RS17590 | | 16S rRNA methyltransferase | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.67 | GFF2780 | | Pyruvate kinase (EC 2.7.1.40) | 0.36 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.67 | Ac3H11_654 | | Pyruvate kinase (EC 2.7.1.40) | 0.37 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 79 |
| Dechlorosoma suillum PS | 0.66 | Dsui_0052 | | pyruvate kinase | 0.38 | Dsui_1568 | | RNA methyltransferase, RsmE family | — | — |
| Variovorax sp. SCN45 | 0.66 | GFF5504 | | Pyruvate kinase (EC 2.7.1.40) | 0.40 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS02525 | | pyruvate kinase | 0.33 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 48 |
| Pseudomonas putida KT2440 | 0.48 | PP_1362 | | pyruvate kinase II | 0.35 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | low | > 96 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_1404 | | pyruvate kinase | 0.33 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_03775 | | pyruvate kinase | 0.35 | AO353_08050 | | 16S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_678 | | Pyruvate kinase (EC 2.7.1.40) | 0.34 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4029 | | pyruvate kinase | 0.35 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4029 | | pyruvate kinase | 0.35 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_17830 | | pyruvate kinase | 0.35 | AO356_13565 | | 16S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS24255 | | pyruvate kinase | 0.34 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS24255 | | pyruvate kinase | 0.34 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_22620 | | pyruvate kinase | 0.34 | PS417_26545 | | 16S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_5494 | | Pyruvate kinase (EC 2.7.1.40) | 0.35 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_1813 | | Pyruvate kinase (EC 2.7.1.40) | 0.35 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_3190 | | pyruvate kinase | 0.33 | Psest_0305 | | RNA methyltransferase, RsmE family | low | > 67 |
| Shewanella loihica PV-4 | 0.47 | Shew_2050 | | pyruvate kinase (RefSeq) | 0.32 | Shew_3224 | | hypothetical protein (RefSeq) | — | — |
| Pseudomonas sp. RS175 | 0.46 | PFR28_03455 | | Pyruvate kinase II | 0.35 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | low | > 88 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS10125 | | pyruvate kinase | 0.33 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Dickeya dianthicola ME23 | 0.46 | DZA65_RS10570 | | pyruvate kinase | 0.33 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.46 | HGI48_RS10155 | | pyruvate kinase | 0.32 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_10025 | | pyruvate kinase | 0.29 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 62 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_2153 | | pyruvate kinase (RefSeq) | 0.34 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.46 | SO2491 | pykA | pyruvate kinase II (NCBI ptt file) | 0.34 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS11790 | | pyruvate kinase | 0.29 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Escherichia fergusonii Becca | 0.45 | EFB2_02088 | | Pyruvate kinase II | 0.33 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | low | > 86 |
| Shewanella amazonensis SB2B | 0.45 | Sama_1814 | | pyruvate kinase (RefSeq) | 0.33 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.45 | EX31_RS10640 | | pyruvate kinase | 0.36 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 89 |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_04725 | pyk | pyruvate kinase | 0.33 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | low | > 87 |
| Escherichia coli Nissle 1917 | 0.45 | ECOLIN_RS10330 | | pyruvate kinase | 0.33 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_01874 | | Pyruvate kinase II | 0.33 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | low | > 73 |
| Escherichia coli BL21 | 0.45 | ECD_01825 | | pyruvate kinase II | 0.33 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_16835 | pyk | pyruvate kinase | 0.33 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_15630 | pyk | pyruvate kinase | 0.33 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Escherichia coli BW25113 | 0.45 | b1854 | pykA | pyruvate kinase (NCBI) | 0.33 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | low | > 76 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_18800 | | pyruvate kinase | 0.34 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_26320 | pyk | pyruvate kinase | 0.33 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS05530 | | pyruvate kinase | 0.31 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 63 |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_01785 | pyk | pyruvate kinase | 0.33 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_01070 | pyk | pyruvate kinase | 0.30 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 52 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_01740 | pyk | pyruvate kinase | 0.33 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_00895 | pyk | pyruvate kinase | 0.33 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_19085 | pyk | pyruvate kinase | 0.33 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS05775 | | pyruvate kinase | 0.32 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 59 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS13370 | pyk | pyruvate kinase | 0.34 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_02409 | | Pyruvate kinase II | 0.34 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | — | — |
| Pantoea sp. MT58 | 0.45 | IAI47_08485 | | pyruvate kinase | 0.35 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF1633 | | Pyruvate kinase (EC 2.7.1.40) | 0.33 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 78 |
| Serratia liquefaciens MT49 | 0.45 | IAI46_14585 | | pyruvate kinase | 0.35 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_02759 | | Pyruvate kinase II | 0.32 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | low | > 85 |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_0702 | | pyruvate kinase | 0.32 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.64 | 24 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS18115 | | pyruvate kinase | 0.31 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 92 |
| Marinobacter adhaerens HP15 | 0.43 | HP15_2176 | | pyruvate kinase II | 0.38 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS18630 | | pyruvate kinase | 0.32 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS17040 | | pyruvate kinase | 0.33 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.1243.1 | | Pyruvate kinase (EC 2.7.1.40) | 0.35 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_04074 | | Pyruvate kinase | 0.21 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.33 | AMB_RS16010 | | pyruvate kinase | 0.15 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_021735 | | pyruvate kinase | 0.21 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.33 | Ga0059261_0685 | | pyruvate kinase | 0.18 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_0228 | | pyruvate kinase (RefSeq) | 0.17 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | — | — |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS06845 | | pyruvate kinase | 0.18 | AZOBR_RS11890 | | 16S rRNA methyltransferase | low | > 97 |
| Fusobacterium nucleatum SB010 | 0.32 | HUW76_00910 | | pyruvate kinase PykF | 0.18 | HUW76_04180 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Bosea sp. OAE506 | 0.31 | ABIE41_RS06285 | | pyruvate kinase | 0.18 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c06970 | | pyruvate kinase PykA | 0.18 | PGA1_c02950 | | RNA methyltransferase-like protein | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS01590 | | pyruvate kinase | 0.17 | ABZR88_RS17085 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_2317 | | pyruvate kinase | 0.17 | Echvi_3055 | | RNA methyltransferase, RsmE family | low | > 79 |
| Sinorhizobium meliloti 1021 | 0.31 | SMc04005 | | pyruvate kinase | 0.17 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | low | > 103 |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A2465 | | Pyruvate kinase (NCBI) | 0.15 | Rru_A0571 | | hypothetical protein (NCBI) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.30 | CA265_RS18740 | | pyruvate kinase | 0.18 | CA265_RS23620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Bifidobacterium breve UCC2003 | 0.30 | BBR_RS14295 | | pyruvate kinase | 0.16 | BBR_RS15150 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Agrobacterium fabrum C58 | 0.30 | Atu3762 | | pyruvate kinase | 0.17 | Atu0657 | | hypothetical protein | — | — |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS16145 | | pyruvate kinase | 0.16 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_00725 | | pyruvate kinase | 0.20 | CA264_05265 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_02130 | | pyruvate kinase | 0.17 | CCNA_03528 | | RNA methyltransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_02130 | | pyruvate kinase | 0.17 | CCNA_03528 | | RNA methyltransferase | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS02440 | | pyruvate kinase | 0.17 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_0965 | | pyruvate kinase (RefSeq) | 0.16 | DvMF_0340 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU2514 | pyk | pyruvate kinase (TIGR) | 0.13 | DVU1685 | | conserved hypothetical protein TIGR00046 (TIGR) | low | > 55 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS07010 | | pyruvate kinase | 0.21 | ABI39_RS18150 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.22 | HMPREF1058_RS09670 | | pyruvate kinase | 0.21 | HMPREF1058_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.21 | BT2841 | | pyruvate kinase (NCBI ptt file) | 0.20 | BT4328 | | conserved hypothetical protein (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.21 | BACOVA_02121 | | pyruvate kinase | 0.21 | BACOVA_05130 | | RNA methyltransferase, RsmE family | — | — |
| Parabacteroides merdae CL09T00C40 | 0.21 | HMPREF1078_RS04695 | | pyruvate kinase | 0.20 | HMPREF1078_RS10135 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 61 |
| Bacteroides stercoris CC31F | 0.21 | HMPREF1181_RS01240 | | pyruvate kinase | 0.20 | HMPREF1181_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 56 |
Not shown: 4 genomes with orthologs for HSERO_RS03350 only; 2 genomes with orthologs for HSERO_RS07110 only