Conservation of cofitness between HER17_RS04700 and HER17_RS03710 in Pectobacterium carotovorum WPP14

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04700 glutamate 5-kinase 1.0 HER17_RS03710 diaminopimelate decarboxylase 0.92 8
Rahnella sp. WP5 0.90 EX31_RS20980 glutamate 5-kinase 0.81 EX31_RS13275 diaminopimelate decarboxylase 0.95 27
Serratia liquefaciens MT49 0.90 IAI46_04430 glutamate 5-kinase 0.81 IAI46_20520 diaminopimelate decarboxylase low > 86
Klebsiella michiganensis M5al 0.89 BWI76_RS05840 glutamate 5-kinase 0.75 BWI76_RS23360 diaminopimelate decarboxylase 0.83 41
Enterobacter sp. TBS_079 0.89 MPMX20_00927 Glutamate 5-kinase 0.79 MPMX20_03705 Diaminopimelate decarboxylase 0.81 61
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2651 glutamate 5-kinase 0.79 EX28DRAFT_2916 diaminopimelate decarboxylase 0.89 11
Pantoea sp. MT58 0.89 IAI47_15120 glutamate 5-kinase 0.75 IAI47_03860 diaminopimelate decarboxylase 0.94 3
Dickeya dianthicola 67-19 0.89 HGI48_RS16605 glutamate 5-kinase 0.86 HGI48_RS17485 diaminopimelate decarboxylase low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.76 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Escherichia fergusonii Becca 0.88 EFB2_03778 Glutamate 5-kinase 0.77 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli ECRC98 0.88 JDDGAC_13300 proB Glutamate 5-kinase 0.77 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.71 71
Escherichia coli ECRC62 0.88 BNILDI_00245 proB Glutamate 5-kinase 0.77 BNILDI_10310 lysA diaminopimelate decarboxylase 0.98 6
Escherichia coli ECRC99 0.88 KEDOAH_18480 proB Glutamate 5-kinase 0.77 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Dickeya dianthicola ME23 0.88 DZA65_RS17695 glutamate 5-kinase 0.87 DZA65_RS18550 diaminopimelate decarboxylase 0.69 22
Erwinia tracheiphila SCR3 0.88 LU632_RS01185 proB glutamate 5-kinase 0.74 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Escherichia coli BW25113 0.88 b0242 proB gamma-glutamyl kinase (NCBI) 0.77 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.89 41
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03398 Glutamate 5-kinase 0.77 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECOR38 0.88 HEPCGN_07780 proB Glutamate 5-kinase 0.77 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.95 21
Escherichia coli BL21 0.88 ECD_00239 gamma-glutamate kinase 0.77 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.89 15
Escherichia coli ECRC102 0.88 NIAGMN_07535 proB Glutamate 5-kinase 0.77 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli Nissle 1917 0.88 ECOLIN_RS01825 glutamate 5-kinase 0.77 ECOLIN_RS15930 diaminopimelate decarboxylase 0.91 10
Escherichia coli ECRC100 0.88 OKFHMN_09675 proB Glutamate 5-kinase 0.77 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.96 19
Escherichia coli ECOR27 0.88 NOLOHH_02050 proB Glutamate 5-kinase 0.77 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.98 6
Escherichia coli ECRC101 0.88 MCAODC_00195 proB Glutamate 5-kinase 0.77 MCAODC_10470 lysA diaminopimelate decarboxylase 0.91 16
Dickeya dadantii 3937 0.88 DDA3937_RS16535 glutamate 5-kinase 0.87 DDA3937_RS17425 diaminopimelate decarboxylase 0.76 15
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_11575 glutamate 5-kinase 0.17 CSW01_00635 diaminopimelate decarboxylase low > 62
Shewanella loihica PV-4 0.62 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.15 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.98 20
Shewanella amazonensis SB2B 0.62 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.17 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.94 13
Shewanella sp. ANA-3 0.59 Shewana3_0954 gamma-glutamyl kinase (RefSeq) 0.17 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.97 6
Shewanella oneidensis MR-1 0.59 SO1121 proB glutamate 5-kinase (NCBI ptt file) 0.17 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.98 3
Dechlorosoma suillum PS 0.40 Dsui_0166 glutamate 5-kinase 0.20 Dsui_1182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.39 PFLU_RS25360 glutamate 5-kinase 0.21 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS25360 glutamate 5-kinase 0.21 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.39 PS417_23545 gamma-glutamyl kinase 0.21 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.20 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_14115 gamma-glutamyl kinase 0.21 AO353_09035 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.37 ABIE53_003588 glutamate 5-kinase 0.17 ABIE53_003749 diaminopimelate decarboxylase 0.42 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0704 glutamate 5-kinase 0.20 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0704 glutamate 5-kinase 0.20 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.20 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.88 22
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS17110 glutamate 5-kinase 0.62 BPHYT_RS35090 diaminopimelate decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_06264 glutamate 5-kinase 0.16 H281DRAFT_05606 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS27270 glutamate 5-kinase 0.16 QEN71_RS28080 diaminopimelate decarboxylase 0.94 14
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS06145 glutamate 5-kinase 0.17 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.36 UW163_RS07480 glutamate 5-kinase 0.17 UW163_RS06625 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.20 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_15815 gamma-glutamyl kinase 0.20 AO356_12740 diaminopimelate decarboxylase — —
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_2197 proB gamma-glutamyl kinase 0.14 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Pseudomonas putida KT2440 0.36 PP_0691 Glutamate 5-kinase 0.59 PP_2077 diaminopimelate decarboxylase low > 96
Pseudomonas sp. RS175 0.36 PFR28_03769 Glutamate 5-kinase 0.20 PFR28_04375 Diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS01815 gamma-glutamyl kinase 0.17 HSERO_RS00950 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.36 ABID97_RS23400 glutamate 5-kinase 0.17 ABID97_RS23305 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.36 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA 0.19 OH686_13800 diaminopimelate decarboxylase 0.68 38
Azospirillum brasilense Sp245 0.36 AZOBR_RS04095 glutamate 5-kinase 0.20 AZOBR_RS16945 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.36 MPMX19_01933 Glutamate 5-kinase 0.20 MPMX19_05819 Diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS17940 gamma-glutamyl kinase 0.17 RR42_RS19050 diaminopimelate decarboxylase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS11095 glutamate 5-kinase 0.17 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS14095 glutamate 5-kinase 0.18 RS_RS14930 diaminopimelate decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01810 glutamate 5-kinase 0.18 ABZR87_RS02640 diaminopimelate decarboxylase 0.81 15
Castellaniella sp019104865 MT123 0.35 ABCV34_RS10800 glutamate 5-kinase 0.16 ABCV34_RS12685 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.35 Psest_3384 glutamate 5-kinase 0.19 Psest_3764 diaminopimelate decarboxylase — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_1467 glutamate 5-kinase (RefSeq) 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Rhizobium sp. OAE497 0.34 ABIE40_RS18920 glutamate 5-kinase 0.18 ABIE40_RS17530 diaminopimelate decarboxylase 0.92 1
Magnetospirillum magneticum AMB-1 0.34 AMB_RS20630 glutamate 5-kinase 0.20 AMB_RS22725 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4771 Glutamate 5-kinase (EC 2.7.2.11) 0.64 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.18 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Rhodopseudomonas palustris CGA009 0.34 TX73_000850 glutamate 5-kinase 0.18 TX73_024635 diaminopimelate decarboxylase — —
Agrobacterium fabrum C58 0.34 Atu2780 gamma-glutamyl kinase 0.18 Atu3601 diaminopimelate decarboxylase — —
Sinorhizobium meliloti 1021 0.34 SMc03776 gamma-glutamyl kinase 0.18 SMc00723 diaminopimelate DAP decarboxylase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_02135 Glutamate 5-kinase 0.18 MPMX26_02232 Diaminopimelate decarboxylase 0.83 4
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00316 glutamate 5-kinase 0.22 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 0.33 CCNA_00316 glutamate 5-kinase 0.22 CCNA_02296 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_1377 gamma-glutamyl kinase (RefSeq) 0.25 DvMF_1010 diaminopimelate decarboxylase (RefSeq) low > 51
Alteromonas macleodii MIT1002 0.33 MIT1002_04056 Glutamate 5-kinase 0.15 MIT1002_00160 Diaminopimelate decarboxylase low > 70
Variovorax sp. SCN45 0.33 GFF2515 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.17 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Rhodospirillum rubrum S1H 0.33 Rru_A1239 Glutamate 5-kinase, ProB-related (NCBI) 0.21 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Marinobacter adhaerens HP15 0.33 HP15_508 gamma-glutamyl kinase 0.17 HP15_247 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0930 proB glutamate 5-kinase (TIGR) 0.24 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) low > 55
Bosea sp. OAE506 0.31 ABIE41_RS07585 glutamate 5-kinase 0.20 ABIE41_RS08740 diaminopimelate decarboxylase — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c15510 glutamate 5-kinase ProB 0.21 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Rhodanobacter denitrificans MT42 0.30 LRK55_RS02130 glutamate 5-kinase 0.23 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS02375 glutamate 5-kinase 0.23 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_09420 proB glutamate 5-kinase 0.23 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS16125 glutamate 5-kinase 0.20 A4249_RS12545 diaminopimelate decarboxylase 0.99 6
Mycobacterium tuberculosis H37Rv 0.29 Rv2439c Probable glutamate 5-kinase protein ProB (gamma-glutamyl kinase) (GK) 0.14 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —
Lysobacter sp. OAE881 0.28 ABIE51_RS13370 glutamate 5-kinase 0.24 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.28 Echvi_4033 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.24 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.72 32
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS08685 glutamate 5-kinase 0.23 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS22170 glutamate 5-kinase 0.14 ABZR88_RS10180 diaminopimelate decarboxylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS20855 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.17 CA265_RS09650 diaminopimelate decarboxylase 0.86 48
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS10650 glutamate 5-kinase 0.17 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.95 39
Bacteroides ovatus ATCC 8483 0.26 BACOVA_03537 glutamate 5-kinase 0.16 BACOVA_00215 diaminopimelate decarboxylase 0.96 4
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_07725 glutamate 5-kinase 0.17 CA264_02390 diaminopimelate decarboxylase low > 74
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3719 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.16 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS03325 glutamate 5-kinase 0.17 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.96 5
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS08650 glutamate 5-kinase 0.16 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS02880 glutamate 5-kinase 0.16 ABI39_RS19950 diaminopimelate decarboxylase 0.64 58
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3512 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.20 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.90 16

Not shown: 2 genomes with orthologs for HER17_RS04700 only; 2 genomes with orthologs for HER17_RS03710 only