| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c26160 | | uvrABC system protein B | 1.0 | PGA1_c30290 | | recombination protein RecR | 0.70 | 5 |
| Dinoroseobacter shibae DFL-12 | 0.86 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.72 | Dshi_0648 | | recombination protein RecR (RefSeq) | 0.70 | 10 |
| Sphingomonas koreensis DSMZ 15582 | 0.68 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.58 | Ga0059261_0645 | | DNA replication and repair protein RecR | 0.84 | 4 |
| Caulobacter crescentus NA1000 | 0.68 | CCNA_03076 | | excinuclease ABC subunit B | 0.57 | CCNA_00270 | | Recombination protein recR | 0.87 | 2 |
| Caulobacter crescentus NA1000 Δfur | 0.68 | CCNA_03076 | | excinuclease ABC subunit B | 0.57 | CCNA_00270 | | Recombination protein recR | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.68 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.55 | A4249_RS15115 | | recombination mediator RecR | low | > 48 |
| Azospirillum brasilense Sp245 | 0.65 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.60 | AZOBR_RS03880 | | recombinase RecR | 0.65 | 6 |
| Azospirillum sp. SherDot2 | 0.64 | MPMX19_01038 | | UvrABC system protein B | 0.56 | MPMX19_02195 | | Recombination protein RecR | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.64 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.53 | AMB_RS20755 | | recombination protein RecR | low | > 64 |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.56 | Rru_A3471 | | RecR protein (NCBI) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_1974 | | Excinuclease ABC subunit B | 0.34 | Psyr_3396 | | DNA replication and repair protein RecR | 0.77 | 3 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_1974 | | Excinuclease ABC subunit B | 0.34 | Psyr_3396 | | DNA replication and repair protein RecR | 0.82 | 4 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_21335 | | excinuclease ABC subunit B | 0.34 | AO356_02495 | | recombination protein RecR | 0.72 | 7 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_04580 | | excinuclease ABC subunit B | 0.34 | OH686_02385 | | recombination protein RecR | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.37 | B158DRAFT_2480 | | DNA replication and repair protein RecR | 0.75 | 5 |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS13420 | | excinuclease ABC subunit B | 0.36 | HER17_RS15695 | | recombination mediator RecR | low | > 75 |
| Pseudomonas fluorescens FW300-N2E2 | 0.53 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.34 | Pf6N2E2_2325 | | Recombination protein RecR | 0.64 | 5 |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.35 | PFLU_RS22415 | | recombination protein RecR | low | > 109 |
| Pseudomonas putida KT2440 | 0.53 | PP_1974 | | excinuclease UvrABC protein B | 0.33 | PP_4267 | | Recombination protein RecR | — | — |
| Serratia liquefaciens MT49 | 0.53 | IAI46_06550 | | excinuclease ABC subunit B | 0.35 | IAI46_05240 | | recombination protein RecR | 0.61 | 16 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_02837 | | UvrABC system protein B | 0.34 | PFR28_01077 | | Recombination protein RecR | low | > 88 |
| Pseudomonas simiae WCS417 | 0.53 | PS417_18685 | | excinuclease ABC subunit B | 0.35 | PS417_20800 | | recombination protein RecR | 0.63 | 2 |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.35 | PFLU_RS22415 | | recombination protein RecR | low | > 109 |
| Rahnella sp. WP5 | 0.53 | EX31_RS23720 | | excinuclease ABC subunit B | 0.36 | EX31_RS22525 | | recombination protein RecR | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_1296 | | excinuclease ABC, B subunit | 0.34 | Psest_2545 | | recombination protein RecR | 0.67 | 6 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_20545 | | excinuclease ABC subunit B | 0.34 | AO353_00675 | | recombination protein RecR | 0.55 | 9 |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.35 | CSW01_05375 | | recombination protein RecR | low | > 62 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.34 | Pf1N1B4_3864 | | Recombination protein RecR | 0.55 | 3 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.34 | PfGW456L13_4074 | | Recombination protein RecR | 0.30 | 22 |
| Shewanella oneidensis MR-1 | 0.52 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.32 | SO2015 | recR | recombination protein RecR (NCBI ptt file) | 0.56 | 5 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.33 | Shewana3_2444 | recR | recombination protein RecR (RefSeq) | low | > 73 |
| Dechlorosoma suillum PS | 0.52 | Dsui_2434 | | excinuclease ABC, B subunit | 0.38 | Dsui_1811 | | recombination protein RecR | 0.77 | 9 |
| Dickeya dadantii 3937 | 0.52 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.36 | DDA3937_RS05790 | | recombination protein RecR | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.52 | GFF675 | | Excinuclease ABC subunit B | 0.35 | GFF4390 | | Recombination protein RecR | 0.47 | 55 |
| Escherichia coli BL21 | 0.52 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.35 | ECD_00423 | | gap repair protein | 0.72 | 12 |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.35 | OKFHMN_08155 | recR | recombination mediator RecR | — | — |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.35 | HEPCGN_06770 | recR | recombination mediator RecR | low | > 85 |
| Escherichia coli ECRC101 | 0.52 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.35 | MCAODC_27380 | recR | recombination mediator RecR | — | — |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.35 | NOLOHH_01085 | recR | recombination mediator RecR | low | > 57 |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.35 | NIAGMN_06210 | recR | recombination mediator RecR | — | — |
| Escherichia coli BW25113 | 0.52 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.35 | b0472 | recR | recombination protein RecR (NCBI) | 0.82 | 3 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_02934 | | UvrABC system protein B | 0.35 | OHPLBJKB_03202 | | Recombination protein RecR | low | > 73 |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.35 | JDDGAC_11805 | recR | recombination mediator RecR | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.35 | KEDOAH_19810 | recR | recombination mediator RecR | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.35 | BNILDI_22505 | recR | recombination mediator RecR | — | — |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.34 | BWI76_RS06830 | | recombination protein RecR | low | > 92 |
| Escherichia fergusonii Becca | 0.52 | EFB2_03326 | | UvrABC system protein B | 0.35 | EFB2_03586 | | Recombination protein RecR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.35 | ECOLIN_RS02805 | | recombination mediator RecR | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.35 | LU632_RS18105 | recR | recombination mediator RecR | low | > 74 |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.35 | DZA65_RS06165 | | recombination protein RecR | low | > 75 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.35 | HGI48_RS05840 | | recombination protein RecR | — | — |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.34 | ABZR87_RS10810 | | recombination mediator RecR | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.32 | RPSI07_RS18205 | | recombination protein RecR | 0.44 | 49 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.32 | UW163_RS12640 | | recombination protein RecR | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.32 | RALBFv3_RS15170 | | recombination protein RecR | low | > 76 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.51 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.35 | Xcc-8004.4012.1 | | Recombination protein RecR | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS05005 | | UvrABC system protein B | 0.32 | RS_RS05980 | | recombination protein RecR | 0.39 | 66 |
| Shewanella amazonensis SB2B | 0.51 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.33 | Sama_1312 | recR | recombination protein RecR (RefSeq) | 0.58 | 4 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF4962 | | Excinuclease ABC subunit B | 0.38 | GFF4253 | | Recombination protein RecR | low | > 90 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.35 | EX28DRAFT_2485 | | DNA replication and repair protein RecR | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.34 | MIT1002_02649 | | Recombination protein RecR | low | > 70 |
| Pantoea sp. MT58 | 0.51 | IAI47_13505 | | excinuclease ABC subunit B | 0.35 | IAI47_14465 | | recombination protein RecR | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_02142 | | UvrABC system protein B | 0.42 | MPMX26_01643 | | Recombination protein RecR | low | > 36 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1372 | | excinuclease ABC subunit B | 0.43 | HP15_1883 | | recombination protein RecR | — | — |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.29 | ABCV34_RS15480 | | recombination mediator RecR | low | > 48 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_01408 | | UvrABC system protein B | 0.35 | MPMX20_01074 | | Recombination protein RecR | low | > 85 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.33 | H281DRAFT_00834 | | DNA replication and repair protein RecR | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.33 | QEN71_RS22285 | | recombination mediator RecR | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.32 | Ac3H11_473 | | Recombination protein RecR | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS05995 | | excinuclease ABC subunit B | 0.33 | RR42_RS13270 | | recombination protein RecR | 0.69 | 7 |
| Shewanella loihica PV-4 | 0.51 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.34 | Shew_2233 | | recombination protein RecR (RefSeq) | 0.45 | 32 |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_001645 | | excinuclease ABC subunit B | 0.32 | ABIE53_002048 | | recombination protein RecR | 0.60 | 46 |
| Variovorax sp. OAS795 | 0.51 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.35 | ABID97_RS14700 | | recombination mediator RecR | low | > 91 |
| Rhodanobacter denitrificans FW104-10B01 | 0.50 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.35 | LRK54_RS01250 | | recombination mediator RecR | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.50 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.35 | LRK55_RS01020 | | recombination mediator RecR | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.35 | OKGIIK_05655 | recR | recombination mediator RecR | low | > 52 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.33 | BPHYT_RS09070 | | recombination protein RecR | low | > 109 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.34 | ABIE51_RS14010 | | recombination mediator RecR | low | > 62 |
| Variovorax sp. SCN45 | 0.50 | GFF945 | | Excinuclease ABC subunit B | 0.34 | GFF1110 | | Recombination protein RecR | low | > 127 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.50 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.31 | DVU3200 | recR | recombination protein RecR (TIGR) | low | > 55 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.34 | ABZR86_RS06235 | | recombination mediator RecR | 0.72 | 21 |
| Desulfovibrio vulgaris Miyazaki F | 0.50 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | 0.30 | DvMF_2271 | | recombination protein RecR (RefSeq) | 0.79 | 3 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.50 | CA265_RS19430 | | excinuclease ABC subunit B | 0.35 | CA265_RS04980 | | recombination protein RecR | 0.87 | 8 |
| Synechococcus elongatus PCC 7942 | 0.48 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.39 | Synpcc7942_1369 | recR | recombination protein RecR | — | — |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.36 | HSERO_RS18355 | | recombinase RecR | 0.61 | 4 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.36 | ABZR88_RS10695 | | recombination mediator RecR | low | > 71 |
| Fusobacterium nucleatum SB010 | 0.48 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.38 | HUW76_08785 | | recombination protein RecR | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.47 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.35 | Rv3715c | | Probable recombination protein RecR | low | > 58 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.47 | CA264_19110 | | excinuclease ABC subunit B | 0.38 | CA264_01105 | | recombination protein RecR | 0.52 | 11 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.47 | Echvi_1215 | | excinuclease ABC, B subunit | 0.37 | Echvi_1987 | | recombination protein RecR | 0.88 | 5 |
| Bifidobacterium breve UCC2003 | 0.46 | BBR_RS14285 | | excinuclease ABC subunit UvrB | 0.37 | BBR_RS10990 | | recombination protein RecR | 0.71 | 5 |
| Parabacteroides merdae CL09T00C40 | 0.44 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.35 | HMPREF1078_RS07615 | | recombination mediator RecR | low | > 61 |
| Bacteroides stercoris CC31F | 0.43 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.35 | HMPREF1181_RS16455 | | recombination protein RecR | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.43 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.38 | HMPREF1058_RS18560 | | recombination protein RecR | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.43 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.35 | BT1081 | | recombination protein recR (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.43 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.38 | ABI39_RS14870 | | recombination protein RecR | low | > 72 |
Not shown: 3 genomes with orthologs for PGA1_c26160 only; 5 genomes with orthologs for PGA1_c30290 only