Conservation of cofitness between GFF5534 and GFF2382 in Variovorax sp. SCN45

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 1.0 GFF2382 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66) 0.53 7
Variovorax sp. OAS795 0.96 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.90 ABID97_RS23635 non-canonical purine NTP pyrophosphatase low > 91
Acidovorax sp. GW101-3H11 0.88 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.79 Ac3H11_3671 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.87 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.76 GFF3255 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 90
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.45 HSERO_RS10660 nucleoside-triphosphate diphosphatase low > 78
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS17400 queuine tRNA-ribosyltransferase 0.47 RR42_RS04885 nucleoside-triphosphate diphosphatase 0.39 28
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.47 BPHYT_RS15330 nucleoside-triphosphate diphosphatase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04670 tRNA-guanine transglycosylase 0.47 H281DRAFT_04009 XTP/dITP diphosphohydrolase low > 103
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.48 ABZR87_RS15260 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.50 QEN71_RS03640 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 153
Ralstonia solanacearum GMI1000 0.63 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.46 RS_RS10835 non-canonical purine NTP pyrophosphatase low > 80
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.50 ABCV34_RS03520 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 48
Ralstonia solanacearum UW163 0.62 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.45 UW163_RS10370 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.45 RALBFv3_RS03350 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 76
Dechlorosoma suillum PS 0.62 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.49 Dsui_0492 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family low > 51
Ralstonia solanacearum PSI07 0.61 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.46 RPSI07_RS13835 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
Acinetobacter radioresistens SK82 0.59 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.38 MPMX26_00400 dITP/XTP pyrophosphatase low > 36
Shewanella sp. ANA-3 0.57 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.35 Shewana3_1189 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.37 CSW01_02430 non-canonical purine NTP pyrophosphatase low > 62
Shewanella oneidensis MR-1 0.57 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.34 SO3358 HAM1 protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.57 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.39 Sama_2482 Ham1-like protein (RefSeq) low > 62
Lysobacter sp. OAE881 0.57 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.38 ABIE51_RS17295 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 62
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1228 tRNA-guanine transglycosylase 0.35 Psyr_0472 Ham1-like protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1228 tRNA-guanine transglycosylase 0.35 Psyr_0472 Ham1-like protein
Pseudomonas stutzeri RCH2 0.56 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.32 Psest_0277 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family low > 67
Pseudomonas sp. RS175 0.56 PFR28_00277 Queuine tRNA-ribosyltransferase 0.34 PFR28_04248 dITP/XTP pyrophosphatase low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06690 queuine tRNA-ribosyltransferase 0.34 AO356_13395 non-canonical purine NTP pyrophosphatase low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.34 Pf6N2E2_4594 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 103
Pseudomonas sp. S08-1 0.56 OH686_17430 tRNA-guanine transglycosylase 0.32 OH686_11015 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 80
Pseudomonas simiae WCS417 0.56 PS417_23245 queuine tRNA-ribosyltransferase 0.34 PS417_26755 nucleoside-triphosphate diphosphatase
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.35 PFLU_RS28400 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 109
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.35 PFLU_RS28400 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 109
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.35 PfGW456L13_1004 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 87
Shewanella loihica PV-4 0.56 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.36 Shew_1132 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq)
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_15790 queuine tRNA-ribosyltransferase 0.34 AO353_08195 non-canonical purine NTP pyrophosphatase
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.37 Xcc-8004.1223.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 74
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.35 Pf1N1B4_2335 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 87
Alteromonas macleodii MIT1002 0.55 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.42 MIT1002_00940 dITP/XTP pyrophosphatase low > 70
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.36 B158DRAFT_0200 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 40
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.39 ABZR86_RS11905 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 74
Pseudomonas putida KT2440 0.55 PP_0833 queuine tRNA-ribosyltransferase 0.34 PP_5100 dITP/XTP pyrophosphatase low > 96
Marinobacter adhaerens HP15 0.55 HP15_1479 queuine tRNA-ribosyltransferase 0.43 HP15_281 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 73
Serratia liquefaciens MT49 0.55 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.41 IAI46_21430 XTP/dITP diphosphatase low > 86
Rhodanobacter denitrificans MT42 0.55 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.38 LRK55_RS11465 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 63
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.38 LRK54_RS11740 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 59
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.39 EX28DRAFT_2992 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.40 MPMX20_03812 dITP/XTP pyrophosphatase low > 85
Dickeya dianthicola 67-19 0.54 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.43 HGI48_RS17365 XTP/dITP diphosphatase low > 71
Dickeya dianthicola ME23 0.54 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.43 DZA65_RS18455 XTP/dITP diphosphatase low > 75
Dickeya dadantii 3937 0.54 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.43 DDA3937_RS17320 XTP/dITP diphosphatase low > 74
Escherichia fergusonii Becca 0.54 EFB2_03651 Queuine tRNA-ribosyltransferase 0.43 EFB2_00948 dITP/XTP pyrophosphatase low > 86
Escherichia coli BW25113 0.54 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.41 b2954 yggV putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) low > 76
Escherichia coli ECRC100 0.54 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 OKFHMN_19240 rdgB XTP/dITP diphosphatase low > 80
Escherichia coli ECRC98 0.54 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 JDDGAC_22870 rdgB XTP/dITP diphosphatase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.42 OHPLBJKB_00762 dITP/XTP pyrophosphatase low > 73
Escherichia coli ECRC102 0.54 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 NIAGMN_17005 rdgB XTP/dITP diphosphatase
Escherichia coli ECRC99 0.54 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 KEDOAH_08900 rdgB XTP/dITP diphosphatase
Escherichia coli ECOR27 0.54 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 NOLOHH_11110 rdgB XTP/dITP diphosphatase low > 75
Escherichia coli ECRC62 0.54 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 BNILDI_09690 rdgB XTP/dITP diphosphatase low > 75
Escherichia coli BL21 0.54 ECD_00354 tRNA-guanine transglycosylase 0.42 ECD_02784 dITP/XTP pyrophosphatase
Escherichia coli ECOR38 0.54 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 HEPCGN_18545 rdgB XTP/dITP diphosphatase low > 87
Escherichia coli ECRC101 0.54 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.42 MCAODC_09760 rdgB XTP/dITP diphosphatase low > 87
Escherichia coli Nissle 1917 0.54 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.43 ECOLIN_RS16430 XTP/dITP diphosphatase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.41 GFF3057 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) low > 78
Rahnella sp. WP5 0.54 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.43 EX31_RS02705 XTP/dITP diphosphatase 0.48 30
Klebsiella michiganensis M5al 0.54 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.41 BWI76_RS24115 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
Pectobacterium carotovorum WPP14 0.54 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.39 HER17_RS03790 XTP/dITP diphosphatase low > 75
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.41 OKGIIK_12155 rdgB RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 52
Pantoea sp. MT58 0.53 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.40 IAI47_03585 XTP/dITP diphosphatase low > 76
Erwinia tracheiphila SCR3 0.53 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.41 LU632_RS05450 XTP/dITP diphosphatase low > 74
Azospirillum brasilense Sp245 0.47 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.19 AZOBR_RS02200 nucleoside-triphosphate diphosphatase low > 97
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.33 DvMF_1699 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (RefSeq)
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.29 DVU3154 HAM1 family protein (TIGR)
Dinoroseobacter shibae DFL-12 0.46 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.22 Dshi_3462 Ham1 family protein (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.46 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.26 Rru_A3640 Ham1-like protein (NCBI) low > 58
Azospirillum sp. SherDot2 0.46 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.18 MPMX19_02575 dITP/XTP pyrophosphatase low > 112
Phaeobacter inhibens DSM 17395 0.45 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.24 PGA1_c35040 nucleoside-triphosphatase RdgB low > 62
Sinorhizobium meliloti 1021 0.45 SMc01206 queuine tRNA-ribosyltransferase 0.24 SMc01146 deoxyribonucleotide triphosphate pyrophosphatase low > 103
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.21 CA265_RS24990 non-canonical purine NTP pyrophosphatase low > 88
Magnetospirillum magneticum AMB-1 0.45 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.28 AMB_RS22765 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 64
Bosea sp. OAE506 0.45 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.26 ABIE41_RS03300 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 77
Rhizobium sp. OAE497 0.44 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.23 ABIE40_RS01630 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 107
Rhodopseudomonas palustris CGA009 0.44 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.22 TX73_001705 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase low > 86
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.24 HMPREF1078_RS06565 non-canonical purine NTP diphosphatase low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.28 Echvi_1180 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.24 ABZR88_RS21980 non-canonical purine NTP diphosphatase
Agrobacterium fabrum C58 0.43 Atu1677 queuine tRNA-ribosyltransferase 0.22 Atu0326 putative deoxyribonucleotide triphosphate pyrophosphatase
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_1017 tRNA-guanine transglycosylase 0.28 Ga0059261_2742 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 68
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.24 HMPREF1181_RS01925 non-canonical purine NTP diphosphatase low > 56
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.26 HMPREF1058_RS11235 non-canonical purine NTP diphosphatase low > 67
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.25 ABI39_RS05750 non-canonical purine NTP diphosphatase low > 72
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.24 BT3128 putative xanthosine triphosphate pyrophosphatase (NCBI ptt file)
Caulobacter crescentus NA1000 0.41 CCNA_01659 queuine tRNA-ribosyltransferase 0.25 CCNA_00145 xanthosine triphosphate pyrophosphatase low > 66
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_00655 tRNA-guanine(34) transglycosylase 0.26 CA264_19890 non-canonical purine NTP pyrophosphatase low > 74
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01659 queuine tRNA-ribosyltransferase 0.25 CCNA_00145 xanthosine triphosphate pyrophosphatase low > 67
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase 0.29 Synpcc7942_1266 rdgB Ham1-like protein low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.24 A4249_RS12440 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
Bacteroides ovatus ATCC 8483 0.41 BACOVA_02570 tRNA-guanine transglycosylase 0.24 BACOVA_02837 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family low > 94
Bifidobacterium breve UCC2003 0.34 BBR_RS10715 tRNA-guanine(34) transglycosylase 0.24 BBR_RS12410 non-canonical purine NTP pyrophosphatase low > 34

Not shown: 1 genomes with orthologs for GFF5534 only; 2 genomes with orthologs for GFF2382 only