| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_25395 | | excinuclease ABC subunit A | 1.0 | PS417_07635 | | transcription-repair coupling factor | 0.49 | 10 |
| Pseudomonas fluorescens SBW25 | 1.00 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.99 | PFLU_RS07710 | | transcription-repair coupling factor | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.99 | PFLU_RS07710 | | transcription-repair coupling factor | 0.26 | 87 |
| Pseudomonas lactucae CFBP13502 | 0.99 | GEMAOFIL_05194 | | UvrABC system protein A | 0.99 | GEMAOFIL_01659 | | Transcription-repair-coupling factor | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.98 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.93 | Pf1N1B4_3916 | | Transcription-repair coupling factor | 0.31 | 43 |
| Pseudomonas fluorescens GW456-L13 | 0.98 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.93 | PfGW456L13_4027 | | Transcription-repair coupling factor | 0.37 | 20 |
| Pseudomonas fluorescens FW300-N2E3 | 0.98 | AO353_06855 | | ABC-ATPase UvrA | 0.94 | AO353_00435 | | transcription-repair coupling factor | 0.35 | 43 |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_14785 | | ABC-ATPase UvrA | 0.94 | AO356_02270 | | transcription-repair coupling factor | 0.50 | 16 |
| Pseudomonas fluorescens FW300-N2E2 | 0.97 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.94 | Pf6N2E2_2278 | | Transcription-repair coupling factor | 0.42 | 18 |
| Pseudomonas sp. RS175 | 0.97 | PFR28_03974 | | UvrABC system protein A | 0.93 | PFR28_01123 | | Transcription-repair-coupling factor | low | > 88 |
| Pseudomonas sp. DMC3 | 0.97 | GFF3792 | | UvrABC system protein A | 0.93 | GFF1285 | | Transcription-repair-coupling factor | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.91 | Psyr_1896 | | transcription-repair coupling factor | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.91 | Psyr_1896 | | transcription-repair coupling factor | 0.25 | 23 |
| Pseudomonas sp. SVBP6 | 0.95 | COO64_RS16075 | uvrA | excinuclease ABC subunit UvrA | 0.91 | COO64_RS09460 | mfd | transcription-repair coupling factor | low | > 93 |
| Pseudomonas sp. BP01 | 0.93 | JOY50_RS20305 | uvrA | excinuclease ABC subunit UvrA | 0.88 | JOY50_RS25100 | mfd | transcription-repair coupling factor | low | > 84 |
| Pseudomonas putida KT2440 | 0.93 | PP_0483 | | excinuclease (uvrABC system protein A) | 0.87 | PP_2148 | | transcription-repair coupling factor | — | — |
| Pseudomonas sp. S08-1 | 0.92 | OH686_15495 | | excinuclease ABC subunit A | 0.86 | OH686_21990 | | transcription-repair coupling factor | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.91 | IKLFDK_21795 | | excinuclease ABC subunit UvrA | 0.88 | IKLFDK_15275 | | transcription-repair coupling factor | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_3576 | | excinuclease ABC, A subunit | 0.87 | Psest_1653 | | transcription-repair coupling factor (mfd) | 0.59 | 8 |
| Escherichia coli ECRC99 | 0.77 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | 0.55 | KEDOAH_24285 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC101 | 0.77 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | 0.55 | MCAODC_22830 | mfd | transcription-repair coupling factor | 0.49 | 18 |
| Escherichia fergusonii Becca | 0.77 | EFB2_04533 | | UvrABC system protein A | 0.55 | EFB2_02861 | | Transcription-repair-coupling factor | low | > 86 |
| Escherichia coli ECRC102 | 0.77 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | 0.55 | NIAGMN_24360 | mfd | transcription-repair coupling factor | 0.91 | 2 |
| Escherichia coli ECRC98 | 0.77 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | 0.55 | JDDGAC_07130 | mfd | transcription-repair coupling factor | 0.55 | 2 |
| Escherichia coli ECRC100 | 0.77 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | 0.55 | OKFHMN_03470 | mfd | transcription-repair coupling factor | low | > 79 |
| Escherichia coli ECOR38 | 0.77 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | 0.55 | HEPCGN_24015 | mfd | transcription-repair coupling factor | 0.46 | 77 |
| Escherichia coli ECOR27 | 0.77 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | 0.55 | NOLOHH_20995 | mfd | transcription-repair coupling factor | low | > 76 |
| Escherichia coli ECRC62 | 0.77 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | 0.55 | BNILDI_19160 | mfd | transcription-repair coupling factor | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.77 | OHPLBJKB_03983 | | UvrABC system protein A | 0.55 | OHPLBJKB_02552 | | Transcription-repair-coupling factor | low | > 74 |
| Escherichia coli BW25113 | 0.77 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.55 | b1114 | mfd | transcription-repair coupling factor (NCBI) | 0.44 | 10 |
| Escherichia coli BL21 | 0.77 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.55 | ECD_01110 | | transcription-repair coupling factor | low | > 61 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.77 | GFF1429 | | Excinuclease ABC subunit A | 0.55 | GFF3397 | | Transcription-repair coupling factor | low | > 78 |
| Dickeya dadantii 3937 | 0.77 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | 0.55 | DDA3937_RS13000 | | transcription-repair coupling factor | low | > 74 |
| Klebsiella pneumoniae MKP103 | 0.77 | KDGMDA_10400 | | excinuclease ABC subunit UvrA | 0.54 | KDGMDA_18800 | | transcription-repair coupling factor | low | > 95 |
| Rahnella sp. WP5 | 0.77 | EX31_RS11990 | | excinuclease ABC subunit UvrA | 0.56 | EX31_RS24520 | | transcription-repair coupling factor | low | > 89 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | 0.55 | DZA65_RS13530 | | transcription-repair coupling factor | 0.54 | 47 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | 0.55 | HGI48_RS13065 | | transcription-repair coupling factor | low | > 71 |
| Marinobacter adhaerens HP15 | 0.77 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | 0.62 | HP15_2257 | | transcription-repair-coupling factor | 0.82 | 9 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_00276 | | UvrABC system protein A | 0.54 | MPMX20_01795 | | Transcription-repair-coupling factor | low | > 85 |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS01950 | | excinuclease ABC subunit A | 0.55 | BWI76_RS11205 | | transcription-repair coupling factor | low | > 92 |
| Kangiella aquimarina DSM 16071 | 0.76 | B158DRAFT_0885 | | excinuclease ABC, A subunit | 0.54 | B158DRAFT_1800 | | transcription-repair coupling factor | 0.67 | 8 |
| Pectobacterium carotovorum WPP14 | 0.76 | HER17_RS03550 | | excinuclease ABC subunit UvrA | 0.55 | HER17_RS08775 | | transcription-repair coupling factor | low | > 75 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | 0.54 | EX28DRAFT_1816 | | transcription-repair coupling factor (mfd) | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.76 | PagCFBP13505_RS21140 | | excinuclease ABC subunit UvrA | 0.55 | PagCFBP13505_RS19410 | | transcription-repair coupling factor | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.76 | MIT1002_00179 | | Excinuclease ABC subunit A | 0.58 | MIT1002_01646 | | Transcription-repair-coupling factor | low | > 70 |
| Serratia liquefaciens MT49 | 0.76 | IAI46_22905 | | excinuclease ABC subunit UvrA | 0.56 | IAI46_10320 | | transcription-repair coupling factor | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.76 | CSW01_02080 | | UvrABC system protein A | 0.56 | CSW01_09445 | | transcription-repair coupling factor | 0.37 | 43 |
| Pantoea sp. MT58 | 0.76 | IAI47_17815 | | excinuclease ABC subunit UvrA | 0.55 | IAI47_11975 | | transcription-repair coupling factor | low | > 76 |
| Shewanella oneidensis MR-1 | 0.75 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.55 | SO2255 | mfd | transcription-repair coupling factor (NCBI ptt file) | 0.33 | 31 |
| Erwinia amylovora T8 | 0.75 | OLJFJH_03425 | | excinuclease ABC subunit UvrA | 0.55 | OLJFJH_15445 | | transcription-repair coupling factor | low | > 58 |
| Shewanella amazonensis SB2B | 0.75 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.55 | Sama_1330 | | transcription-repair coupling factor (RefSeq) | 0.55 | 12 |
| Shewanella sp. ANA-3 | 0.75 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | 0.56 | Shewana3_2289 | | transcription-repair coupling factor (RefSeq) | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.75 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | 0.55 | LU632_RS14730 | mfd | transcription-repair coupling factor | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.75 | IJEDHG_11155 | uvrA | excinuclease ABC subunit UvrA | 0.55 | IJEDHG_00560 | mfd | transcription-repair coupling factor | low | > 61 |
| Shewanella loihica PV-4 | 0.75 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.55 | Shew_1630 | | transcription-repair coupling factor (RefSeq) | 0.61 | 22 |
| Dechlorosoma suillum PS | 0.74 | Dsui_1622 | | excinuclease ABC, A subunit | 0.49 | Dsui_2385 | | transcription-repair coupling factor Mfd | 0.96 | 1 |
| Dyella japonica UNC79MFTsu3.2 | 0.72 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | 0.56 | ABZR86_RS21210 | | transcription-repair coupling factor | 0.71 | 23 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | 0.53 | Xcc-8004.1775.1 | | Transcription-repair coupling factor | low | > 74 |
| Methylophilus sp. DMC18 | 0.71 | GFF2008 | | UvrABC system protein A | 0.50 | GFF356 | | Transcription-repair-coupling factor | low | > 43 |
| Rhodanobacter sp000427505 FW510-R12 | 0.71 | LRK53_RS13420 | | excinuclease ABC subunit UvrA | 0.55 | LRK53_RS08005 | | transcription-repair coupling factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.71 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | 0.56 | LRK55_RS01815 | | transcription-repair coupling factor | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.71 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | 0.56 | LRK54_RS02040 | | transcription-repair coupling factor | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.71 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | 0.55 | OKGIIK_09105 | mfd | transcription-repair coupling factor | low | > 52 |
| Ralstonia sp. UNC404CL21Col | 0.70 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | 0.50 | ABZR87_RS13240 | | transcription-repair coupling factor | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS19810 | | excinuclease ABC subunit A | 0.48 | HSERO_RS15180 | | transcription-repair coupling factor | 0.45 | 29 |
| Ralstonia solanacearum PSI07 | 0.70 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | 0.48 | RPSI07_RS16040 | | transcription-repair coupling factor | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.70 | RS_RS02080 | | excinuclease ABC subunit UvrA | 0.49 | RS_RS08275 | | transcription-repair coupling factor | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.70 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | 0.49 | RALBFv3_RS01445 | | transcription-repair coupling factor | low | > 76 |
| Ralstonia solanacearum UW163 | 0.70 | UW163_RS02345 | | excinuclease ABC subunit UvrA | 0.49 | UW163_RS14755 | | transcription-repair coupling factor | — | — |
| Acinetobacter baumannii LAC-4 | 0.69 | RR41_RS01040 | | excinuclease ABC subunit UvrA | 0.52 | RR41_RS12305 | | transcription-repair coupling factor | low | > 55 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS02145 | | excinuclease ABC subunit A | 0.48 | RR42_RS07845 | | transcription-repair coupling factor | 0.45 | 13 |
| Paraburkholderia sabiae LMG 24235 | 0.69 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | 0.50 | QEN71_RS22060 | | transcription-repair coupling factor | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS02970 | | excinuclease ABC subunit A | 0.50 | BPHYT_RS09290 | | helicase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_000732 | | excinuclease ABC subunit A | 0.50 | ABIE53_002095 | | transcription-repair coupling factor (superfamily II helicase) | 0.50 | 5 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_01913 | | Excinuclease ABC subunit A | 0.50 | H281DRAFT_00880 | | transcription-repair coupling factor | low | > 103 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02892 | | UvrABC system protein A | 0.53 | MPMX26_01319 | | Transcription-repair-coupling factor | 0.41 | 12 |
| Variovorax sp. SCN45 | 0.66 | GFF4944 | | Excinuclease ABC subunit A | 0.49 | GFF412 | | Transcription-repair coupling factor | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.66 | GFF2755 | | Excinuclease ABC subunit A | 0.49 | GFF4934 | | Transcription-repair coupling factor | low | > 90 |
| Variovorax sp. OAS795 | 0.66 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | 0.49 | ABID97_RS17285 | | transcription-repair coupling factor | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_4387 | | Excinuclease ABC subunit A | 0.48 | Ac3H11_328 | | Transcription-repair coupling factor | low | > 79 |
| Xanthobacter sp. DMC5 | 0.62 | GFF749 | | UvrABC system protein A | 0.34 | GFF946 | | Transcription-repair-coupling factor | — | — |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | 0.47 | ABCV34_RS08660 | | transcription-repair coupling factor | 0.71 | 20 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | 0.32 | Rru_A1726 | | Transcription-repair coupling factor (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.62 | A4249_RS08575 | | excinuclease ABC subunit UvrA | 0.34 | A4249_RS04775 | | transcription-repair coupling factor | low | > 48 |
| Sphingobium sp. HT1-2 | 0.61 | GFF1696 | | Excinuclease ABC subunit A | 0.34 | GFF3606 | | Transcription-repair coupling factor | low | > 95 |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_014580 | | excinuclease ABC subunit UvrA | 0.33 | TX73_013805 | | transcription-repair coupling factor | low | > 86 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_01152 | | UvrABC system protein A | 0.33 | MPMX19_00876 | | Transcription-repair-coupling factor | 0.46 | 86 |
| Dinoroseobacter shibae DFL-12 | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | 0.33 | Dshi_1561 | | transcription-repair coupling factor (RefSeq) | 0.57 | 16 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.33 | CCNA_01920 | | transcription-repair coupling factor Mfd | low | > 67 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.33 | CCNA_01920 | | transcription-repair coupling factor Mfd | 0.72 | 11 |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0674 | | excinuclease ABC, A subunit | 0.34 | Ga0059261_0960 | | transcription-repair coupling factor (mfd) | 0.48 | 11 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS12410 | | excinuclease ABC subunit UvrA | 0.33 | AMB_RS12390 | | transcription-repair coupling factor | low | > 64 |
| Agrobacterium fabrum C58 | 0.60 | Atu1513 | | ABC excinuclease subunit A | 0.33 | Atu1778 | | transcription-repair coupling factor | 0.64 | 4 |
| Rhizobium sp. OAE497 | 0.60 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | 0.32 | ABIE40_RS09310 | | transcription-repair coupling factor | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.59 | SMc01235 | | excinuclease ABC subunit A | 0.32 | SMc04450 | | transcription-repair coupling factor | low | > 103 |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | 0.32 | ABIE41_RS15825 | | transcription-repair coupling factor | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.58 | PGA1_c17370 | | uvrABC system protein A | 0.33 | PGA1_c14920 | | transcription-repair-coupling factor Mfd | 0.23 | 45 |
| Mycobacterium tuberculosis H37Rv | 0.55 | Rv1638 | | Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA | 0.27 | Rv1020 | | Probable transcription-repair coupling factor Mfd (TRCF) | 0.32 | 11 |
| Bifidobacterium breve UCC2003 | 0.54 | BBR_RS15510 | | excinuclease ABC subunit UvrA | 0.27 | BBR_RS14115 | | transcription-repair coupling factor | 0.46 | 24 |
| Synechococcus elongatus PCC 7942 | 0.54 | Synpcc7942_0848 | uvrA | excinuclease ABC subunit A | 0.28 | Synpcc7942_1326 | mfd | transcription-repair coupling factor | 0.68 | 2 |
| Synechocystis sp000284455 PCC 6803 | 0.53 | SGL_RS06380 | | excinuclease ABC subunit UvrA | 0.27 | SGL_RS14485 | | transcription-repair coupling factor | 0.93 | 1 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.51 | Echvi_1138 | | excinuclease ABC, A subunit | 0.26 | Echvi_1312 | | transcription-repair coupling factor (mfd) | 0.38 | 49 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.50 | CA264_18100 | | ABC-ATPase UvrA | 0.27 | CA264_15820 | | transcription-repair coupling factor | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.50 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | 0.26 | HMPREF1078_RS02110 | | transcription-repair coupling factor | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | 0.26 | ABZR88_RS21080 | | transcription-repair coupling factor | low | > 71 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.47 | DVU1987 | uvrA | excinuclease ABC, A subunit (TIGR) | 0.27 | DVU1903 | mfd | transcription-repair coupling factor (TIGR) | 0.70 | 1 |
| Desulfovibrio vulgaris Miyazaki F | 0.45 | DvMF_3050 | | excinuclease ABC, A subunit (RefSeq) | 0.26 | DvMF_0285 | | transcription-repair coupling factor (RefSeq) | low | > 51 |
Not shown: 12 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_07635 only