| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c26160 | | uvrABC system protein B | 1.0 | PGA1_c10840 | | DNA repair protein RadA | 0.48 | 15 |
| Dinoroseobacter shibae DFL-12 | 0.86 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.75 | Dshi_2129 | | DNA repair protein RadA (RefSeq) | 0.75 | 9 |
| Sphingomonas koreensis DSMZ 15582 | 0.68 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.52 | Ga0059261_0751 | | DNA repair protein RadA | 0.35 | 20 |
| Caulobacter crescentus NA1000 Δfur | 0.68 | CCNA_03076 | | excinuclease ABC subunit B | 0.54 | CCNA_01732 | | DNA repair protein RadA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.68 | CCNA_03076 | | excinuclease ABC subunit B | 0.54 | CCNA_01732 | | DNA repair protein RadA | 0.64 | 15 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.68 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.52 | A4249_RS03745 | | DNA repair protein RadA | low | > 48 |
| Azospirillum brasilense Sp245 | 0.65 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.56 | AZOBR_RS08320 | | DNA repair protein RadA | 0.73 | 2 |
| Azospirillum sp. SherDot2 | 0.64 | MPMX19_01038 | | UvrABC system protein B | 0.57 | MPMX19_00904 | | DNA repair protein RadA | 0.44 | 94 |
| Magnetospirillum magneticum AMB-1 | 0.64 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.55 | AMB_RS10555 | | DNA repair protein RadA | low | > 64 |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.53 | Rru_A0406 | | DNA repair protein RadA (NCBI) | low | > 58 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_1974 | | Excinuclease ABC subunit B | 0.47 | Psyr_4275 | | DNA replication and repair protein RadA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_1974 | | Excinuclease ABC subunit B | 0.47 | Psyr_4275 | | DNA replication and repair protein RadA | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_21335 | | excinuclease ABC subunit B | 0.47 | AO356_15680 | | DNA repair protein RadA | 0.74 | 6 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_04580 | | excinuclease ABC subunit B | 0.47 | OH686_16185 | | DNA repair protein RadA | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.53 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.47 | Pf6N2E2_5076 | | DNA repair protein RadA | 0.43 | 16 |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.46 | B158DRAFT_0877 | | DNA replication and repair protein RadA | 0.55 | 27 |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS13420 | | excinuclease ABC subunit B | 0.42 | HER17_RS19085 | | DNA repair protein RadA | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.47 | PFLU_RS26230 | | DNA repair protein RadA | low | > 109 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_06550 | | excinuclease ABC subunit B | 0.44 | IAI46_02945 | | DNA repair protein RadA | low | > 86 |
| Pseudomonas putida KT2440 | 0.53 | PP_1974 | | excinuclease UvrABC protein B | 0.46 | PP_4644 | | DNA repair enzyme | — | — |
| Pseudomonas simiae WCS417 | 0.53 | PS417_18685 | | excinuclease ABC subunit B | 0.47 | PS417_24305 | | DNA repair protein RadA | 0.48 | 7 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_02837 | | UvrABC system protein B | 0.47 | PFR28_03792 | | DNA repair protein RadA | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.47 | PFLU_RS26230 | | DNA repair protein RadA | 0.23 | 109 |
| Rahnella sp. WP5 | 0.53 | EX31_RS23720 | | excinuclease ABC subunit B | 0.43 | EX31_RS04030 | | DNA repair protein RadA | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_1296 | | excinuclease ABC, B subunit | 0.46 | Psest_3401 | | DNA repair protein RadA | 0.57 | 10 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_20545 | | excinuclease ABC subunit B | 0.47 | AO353_13980 | | DNA repair protein RadA | 0.56 | 8 |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.42 | CSW01_11870 | | DNA repair protein RadA | 0.38 | 44 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.47 | PfGW456L13_1442 | | DNA repair protein RadA | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.47 | Pf1N1B4_2768 | | DNA repair protein RadA | 0.30 | 51 |
| Shewanella oneidensis MR-1 | 0.52 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.43 | SO1226 | radA | DNA repair protein RadA (NCBI ptt file) | 0.53 | 7 |
| Dickeya dadantii 3937 | 0.52 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.41 | DDA3937_RS02420 | | DNA repair protein RadA | low | > 74 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.44 | Shewana3_1049 | | DNA repair protein RadA (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.52 | GFF675 | | Excinuclease ABC subunit B | 0.43 | GFF1057 | | DNA repair protein RadA | low | > 78 |
| Dechlorosoma suillum PS | 0.52 | Dsui_2434 | | excinuclease ABC, B subunit | 0.43 | Dsui_2413 | | DNA repair protein RadA | low | > 51 |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.44 | JDDGAC_14790 | radA | DNA repair protein RadA | — | — |
| Escherichia coli ECRC101 | 0.52 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.44 | MCAODC_01710 | radA | DNA repair protein RadA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_02934 | | UvrABC system protein B | 0.44 | OHPLBJKB_03672 | | DNA repair protein RadA | low | > 73 |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.44 | KEDOAH_16960 | radA | DNA repair protein RadA | — | — |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.44 | NOLOHH_03520 | radA | DNA repair protein RadA | low | > 57 |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.44 | HEPCGN_09195 | radA | DNA repair protein RadA | low | > 85 |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.44 | NIAGMN_09045 | radA | DNA repair protein RadA | — | — |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.44 | OKFHMN_11195 | radA | DNA repair protein RadA | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.44 | BNILDI_08075 | radA | DNA repair protein RadA | — | — |
| Escherichia coli BL21 | 0.52 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.44 | ECD_04265 | | DNA repair protein | 0.79 | 6 |
| Escherichia coli BW25113 | 0.52 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.44 | b4389 | radA | predicted repair protein (NCBI) | 0.52 | 9 |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.44 | BWI76_RS04165 | | DNA repair protein RadA | low | > 92 |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.44 | ECOLIN_RS25190 | | DNA repair protein RadA | low | > 52 |
| Escherichia fergusonii Becca | 0.52 | EFB2_03326 | | UvrABC system protein B | 0.44 | EFB2_04057 | | DNA repair protein RadA | low | > 86 |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.41 | DZA65_RS02485 | | DNA repair protein RadA | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.43 | LU632_RS02550 | radA | DNA repair protein RadA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.41 | HGI48_RS02380 | | DNA repair protein RadA | low | > 71 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.44 | ABZR87_RS11670 | | DNA repair protein RadA | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.43 | RALBFv3_RS00210 | | DNA repair protein RadA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.43 | UW163_RS13540 | | DNA repair protein RadA | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.42 | RPSI07_RS17270 | | DNA repair protein RadA | low | > 81 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.51 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.46 | Xcc-8004.3812.1 | | DNA repair protein RadA | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS05005 | | UvrABC system protein B | 0.42 | RS_RS06880 | | DNA repair protein RadA | low | > 80 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.44 | EX28DRAFT_3597 | | DNA repair protein RadA | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF4962 | | Excinuclease ABC subunit B | 0.44 | GFF1833 | | DNA repair protein RadA | 0.63 | 44 |
| Shewanella amazonensis SB2B | 0.51 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.42 | Sama_0981 | | DNA repair protein RadA (RefSeq) | 0.58 | 5 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.43 | MIT1002_02706 | | Lon protease 2 | low | > 70 |
| Pantoea sp. MT58 | 0.51 | IAI47_13505 | | excinuclease ABC subunit B | 0.43 | IAI47_16345 | | DNA repair protein RadA | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_02142 | | UvrABC system protein B | 0.46 | MPMX26_02235 | | DNA repair protein RadA | low | > 36 |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.43 | ABCV34_RS02345 | | DNA repair protein RadA | low | > 48 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_01408 | | UvrABC system protein B | 0.44 | MPMX20_00694 | | DNA repair protein RadA | low | > 85 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1372 | | excinuclease ABC subunit B | 0.42 | HP15_487 | | DNA repair protein RadA | 0.92 | 2 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.44 | H281DRAFT_00590 | | DNA replication and repair protein RadA | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.44 | QEN71_RS06320 | | DNA repair protein RadA | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.45 | Ac3H11_3371 | | DNA repair protein RadA | 0.63 | 12 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS05995 | | excinuclease ABC subunit B | 0.43 | RR42_RS12030 | | DNA repair protein RadA | — | — |
| Shewanella loihica PV-4 | 0.51 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.34 | Shew_2807 | | DNA repair protein RadA (RefSeq) | 0.88 | 3 |
| Variovorax sp. OAS795 | 0.51 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.48 | ABID97_RS03770 | | DNA repair protein RadA | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_001645 | | excinuclease ABC subunit B | 0.45 | ABIE53_002526 | | DNA repair protein RadA/Sms | low | > 113 |
| Rhodanobacter denitrificans MT42 | 0.50 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.46 | LRK55_RS02280 | | DNA repair protein RadA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.50 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.46 | LRK54_RS02525 | | DNA repair protein RadA | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.47 | OKGIIK_09580 | radA | DNA repair protein RadA | low | > 52 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.44 | BPHYT_RS12235 | | DNA repair protein RadA | low | > 109 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.45 | ABIE51_RS07685 | | DNA repair protein RadA | low | > 62 |
| Variovorax sp. SCN45 | 0.50 | GFF945 | | Excinuclease ABC subunit B | 0.48 | GFF5087 | | DNA repair protein RadA | low | > 127 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.50 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.39 | DVU1590 | radA | DNA repair protein RadA (TIGR) | low | > 55 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.46 | ABZR86_RS08845 | | DNA repair protein RadA | 0.78 | 14 |
| Desulfovibrio vulgaris Miyazaki F | 0.50 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | 0.39 | DvMF_0471 | | DNA repair protein RadA (RefSeq) | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.50 | CA265_RS19430 | | excinuclease ABC subunit B | 0.42 | CA265_RS22660 | | DNA repair protein RadA | 0.44 | 25 |
| Synechococcus elongatus PCC 7942 | 0.48 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.40 | Synpcc7942_1452 | radA | DNA repair protein RadA | 0.44 | 22 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.45 | HSERO_RS10745 | | DNA repair protein RadA | 0.54 | 8 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.44 | ABZR88_RS20495 | | DNA repair protein RadA | 0.37 | 39 |
| Fusobacterium nucleatum SB010 | 0.48 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.36 | HUW76_02270 | | DNA repair protein RadA | low | > 35 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.47 | CA264_19110 | | excinuclease ABC subunit B | 0.42 | CA264_17125 | | DNA repair protein RadA | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.47 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.39 | Rv3585 | | DNA repair protein RadA (DNA repair protein SMS) | low | > 58 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.47 | Echvi_1215 | | excinuclease ABC, B subunit | 0.43 | Echvi_1031 | | DNA repair protein RadA | 0.54 | 21 |
| Bifidobacterium breve UCC2003 | 0.46 | BBR_RS14285 | | excinuclease ABC subunit UvrB | 0.38 | BBR_RS18740 | | DNA repair protein RadA | low | > 34 |
| Parabacteroides merdae CL09T00C40 | 0.44 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.42 | HMPREF1078_RS08395 | | DNA repair protein RadA | low | > 61 |
| Bacteroides stercoris CC31F | 0.43 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.42 | HMPREF1181_RS00075 | | DNA repair protein RadA | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.43 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.42 | HMPREF1058_RS14715 | | DNA repair protein RadA | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.43 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.42 | BT2406 | | putative DNA repair protein (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.43 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.42 | ABI39_RS10420 | | DNA repair protein RadA | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.42 | BACOVA_03714 | | excinuclease ABC, B subunit | 0.41 | BACOVA_03019 | | DNA repair protein RadA | low | > 94 |
Not shown: 2 genomes with orthologs for PGA1_c26160 only; 5 genomes with orthologs for PGA1_c10840 only