Conservation of cofitness between Dsui_1622 and Dsui_0707 in Dechlorosoma suillum PS

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_1622 excinuclease ABC, A subunit 1.0 Dsui_0707 protein RecA 0.88 8
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.75 ABZR87_RS07965 recombinase RecA low > 80
Ralstonia solanacearum UW163 0.78 UW163_RS02345 excinuclease ABC subunit UvrA 0.75 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.75 RALBFv3_RS12010 recombinase RecA low > 76
Ralstonia solanacearum GMI1000 0.78 RS_RS02080 excinuclease ABC subunit UvrA 0.75 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum PSI07 0.78 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.75 RPSI07_RS21260 recombinase RecA low > 81
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS01825 excinuclease ABC subunit UvrA 0.81 QEN71_RS02335 recombinase RecA — —
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19810 excinuclease ABC subunit A 0.74 HSERO_RS03270 protein RecA 0.43 34
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS02970 excinuclease ABC subunit A 0.79 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia graminis OAS925 0.77 ABIE53_000732 excinuclease ABC subunit A 0.79 ABIE53_003448 recombination protein RecA 0.38 54
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_01913 Excinuclease ABC subunit A 0.79 H281DRAFT_04208 RecA protein low > 103
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS02145 excinuclease ABC subunit A 0.78 RR42_RS03080 recombinase RecA 0.46 12
Pseudomonas putida KT2440 0.75 PP_0483 excinuclease (uvrABC system protein A) 0.75 PP_1629 Protein RecA — —
Pseudomonas stutzeri RCH2 0.75 Psest_3576 excinuclease ABC, A subunit 0.75 Psest_2872 protein RecA 0.35 15
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_06855 ABC-ATPase UvrA 0.73 AO353_16805 recombinase RecA 0.28 95
Pseudomonas sp. S08-1 0.75 OH686_15495 excinuclease ABC subunit A 0.73 OH686_18205 protein RecA low > 80
Pseudomonas simiae WCS417 0.75 PS417_25395 excinuclease ABC subunit A 0.74 PS417_05815 recombinase RecA 0.41 13
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1283 Excinuclease ABC subunit A 0.73 PfGW456L13_4668 RecA protein 0.29 49
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4520 Excinuclease ABC subunit A 0.74 Psyr_1378 RecA protein 0.54 13
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4520 Excinuclease ABC subunit A 0.74 Psyr_1378 RecA protein 0.36 12
Pseudomonas fluorescens SBW25 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.74 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.74 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas sp. RS175 0.75 PFR28_03974 UvrABC system protein A 0.73 PFR28_00472 Protein RecA low > 88
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2611 Excinuclease ABC subunit A 0.73 Pf1N1B4_3143 RecA protein 0.46 10
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_14785 ABC-ATPase UvrA 0.73 AO356_05670 recombinase RecA 0.32 37
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4888 Excinuclease ABC subunit A 0.73 Pf6N2E2_2993 RecA protein — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS03550 excinuclease ABC subunit UvrA 0.73 HER17_RS05045 recombinase RecA low > 75
Marinobacter adhaerens HP15 0.72 HP15_406 excinuclease ABC, ATPase subunit (A) 0.74 HP15_1048 recombinase A low > 73
Pantoea sp. MT58 0.72 IAI47_17815 excinuclease ABC subunit UvrA 0.72 IAI47_04300 recombinase RecA low > 76
Dickeya dianthicola ME23 0.72 DZA65_RS18735 excinuclease ABC subunit UvrA 0.72 DZA65_RS17450 recombinase RecA — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_4246 excinuclease ABC, A subunit 0.72 EX28DRAFT_2785 protein RecA — —
Dickeya dianthicola 67-19 0.72 HGI48_RS17610 excinuclease ABC subunit UvrA 0.72 HGI48_RS16355 recombinase RecA low > 71
Rahnella sp. WP5 0.72 EX31_RS11990 excinuclease ABC subunit UvrA 0.72 EX31_RS07800 recombinase RecA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF1429 Excinuclease ABC subunit A 0.73 GFF4693 RecA protein — —
Dickeya dadantii 3937 0.72 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.73 DDA3937_RS16245 recombinase RecA low > 74
Escherichia coli Nissle 1917 0.72 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.73 ECOLIN_RS15060 recombinase RecA — —
Serratia liquefaciens MT49 0.72 IAI46_22905 excinuclease ABC subunit UvrA 0.72 IAI46_03840 recombinase RecA 0.60 3
Escherichia fergusonii Becca 0.72 EFB2_04533 UvrABC system protein A 0.73 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC102 0.72 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.73 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC98 0.72 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.73 JDDGAC_24370 recA recombinase RecA — —
Enterobacter sp. TBS_079 0.72 MPMX20_00276 UvrABC system protein A 0.72 MPMX20_03580 Protein RecA low > 85
Escherichia coli ECRC99 0.72 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.73 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECRC101 0.72 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.73 MCAODC_11230 recA recombinase RecA — —
Escherichia coli BW25113 0.72 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.73 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECRC62 0.72 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.73 BNILDI_11105 recA recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03983 UvrABC system protein A 0.73 OHPLBJKB_01035 Protein RecA low > 73
Escherichia coli ECOR27 0.72 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.73 NOLOHH_12545 recA recombinase RecA — —
Escherichia coli ECOR38 0.72 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.73 HEPCGN_19900 recA recombinase RecA low > 85
Escherichia coli ECRC101 0.72 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.73 OKFHMN_20705 recA recombinase RecA — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_0885 excinuclease ABC, A subunit 0.78 B158DRAFT_1531 protein RecA 0.58 17
Escherichia coli BL21 0.72 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.73 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 60
Klebsiella michiganensis M5al 0.71 BWI76_RS01950 excinuclease ABC subunit A 0.73 BWI76_RS22180 recombinase RecA — —
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_02080 UvrABC system protein A 0.73 CSW01_02875 DNA recombination/repair protein RecA low > 62
Erwinia tracheiphila SCR3 0.71 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.73 LU632_RS15735 recA recombinase RecA low > 74
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.74 Xcc-8004.3111.1 RecA protein — —
Shewanella oneidensis MR-1 0.71 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.74 SO3430 recA recA protein (NCBI ptt file) 0.30 44
Shewanella sp. ANA-3 0.71 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.73 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.70 MIT1002_00179 Excinuclease ABC subunit A 0.77 MIT1002_00955 Recombinase A low > 70
Shewanella amazonensis SB2B 0.70 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.71 Sama_1046 recA recombinase A (RefSeq) 0.30 62
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.78 ABZR86_RS00660 recombinase RecA 0.71 24
Variovorax sp. SCN45 0.70 GFF4944 Excinuclease ABC subunit A 0.75 GFF5390 RecA protein low > 127
Shewanella loihica PV-4 0.70 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.71 Shew_1215 recA recombinase A (RefSeq) low > 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF2755 Excinuclease ABC subunit A 0.73 GFF2500 RecA protein low > 90
Variovorax sp. OAS795 0.70 ABID97_RS04340 excinuclease ABC subunit UvrA 0.75 ABID97_RS02275 recombinase RecA low > 91
Rhodanobacter denitrificans MT42 0.69 LRK55_RS14925 excinuclease ABC subunit UvrA 0.81 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS15210 excinuclease ABC subunit UvrA 0.81 LRK54_RS14980 recombinase RecA 0.43 30
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.81 OKGIIK_03740 recA recombinase RecA low > 52
Acidovorax sp. GW101-3H11 0.69 Ac3H11_4387 Excinuclease ABC subunit A 0.75 Ac3H11_1255 RecA protein — —
Castellaniella sp019104865 MT123 0.65 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.77 ABCV34_RS04460 recombinase RecA low > 48
Acinetobacter radioresistens SK82 0.65 MPMX26_02892 UvrABC system protein A 0.75 MPMX26_01308 Protein RecA low > 36
Azospirillum sp. SherDot2 0.62 MPMX19_01152 UvrABC system protein A 0.71 MPMX19_00869 Protein RecA — —
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.70 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02673 excinuclease ABC subunit A 0.68 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.61 CCNA_02673 excinuclease ABC subunit A 0.68 CCNA_01141 RecA protein 0.71 12
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.65 Dshi_1643 recA protein (RefSeq) 0.61 15
Azospirillum brasilense Sp245 0.61 AZOBR_RS15370 excinuclease ABC subunit A 0.72 AZOBR_RS11095 recombinase RecA 0.47 39
Agrobacterium fabrum C58 0.61 Atu1513 ABC excinuclease subunit A 0.71 Atu1874 RecA protein 0.51 10
Sinorhizobium meliloti 1021 0.60 SMc01235 excinuclease ABC subunit A 0.70 SMc00760 recombinase A 0.52 19
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS08575 excinuclease ABC subunit UvrA 0.71 A4249_RS12615 recombinase RecA low > 48
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.71 ABIE40_RS10320 recombinase RecA low > 107
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.72 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Bosea sp. OAE506 0.60 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.68 ABIE41_RS13335 recombinase RecA 0.54 12
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_0674 excinuclease ABC, A subunit 0.69 Ga0059261_0204 protein RecA 0.61 9
Rhodopseudomonas palustris CGA009 0.59 TX73_014580 excinuclease ABC subunit UvrA 0.72 TX73_019940 recombinase RecA — —
Phaeobacter inhibens DSM 17395 0.59 PGA1_c17370 uvrABC system protein A 0.71 PGA1_c15260 protein recA (recombinase A) 0.58 9
Bifidobacterium breve UCC2003 0.55 BBR_RS15510 excinuclease ABC subunit UvrA 0.67 BBR_RS16530 recombinase RecA 0.51 13
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.58 Synpcc7942_0348 recA recombinase A — —
Fusobacterium nucleatum SB010 0.53 HUW76_06660 excinuclease ABC subunit UvrA 0.57 HUW76_07355 recombinase RecA low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_18100 ABC-ATPase UvrA 0.65 CA264_19695 DNA recombination/repair protein RecA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_1138 excinuclease ABC, A subunit 0.61 Echvi_0044 protein RecA 0.48 23
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.63 BACOVA_05402 RecA protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.62 BT4610 RecA (NCBI ptt file) 0.56 51
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS25080 excinuclease ABC subunit A 0.63 CA265_RS00600 recombinase RecA 0.70 12
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.63 HMPREF1078_RS00095 recombinase RecA low > 61
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS15330 excinuclease ABC subunit UvrA 0.64 ABI39_RS11930 recombinase RecA low > 72
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.64 HMPREF1058_RS15965 recombinase RecA low > 67
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.63 HMPREF1181_RS11910 recombinase RecA low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.64 ABZR88_RS16740 recombinase RecA low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.48 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.64 DVU1090 recA recA protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.63 DvMF_0876 recA recombinase A (RefSeq) 0.48 5

Not shown: 3 genomes with orthologs for Dsui_1622 only; 1 genomes with orthologs for Dsui_0707 only