Conservation of cofitness between DZA65_RS19385 and DZA65_RS15335 in Dickeya dianthicola ME23

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS15335 amidophosphoribosyltransferase 0.83 14
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.00 HGI48_RS14405 amidophosphoribosyltransferase 0.81 10
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.99 DDA3937_RS14435 amidophosphoribosyltransferase 0.77 40
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.94 HER17_RS07020 amidophosphoribosyltransferase 0.95 20
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.89 EX31_RS19570 amidophosphoribosyltransferase 0.90 62
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.89 BWI76_RS20350 amidophosphoribosyltransferase 0.57 15
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.89 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14)
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.88 ECD_02237 amidophosphoribosyltransferase 0.82 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.88 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.51 11
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.91 IAI46_17810 amidophosphoribosyltransferase low > 86
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.88 b2312 purF amidophosphoribosyltransferase (NCBI) 0.84 33
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.88 MCAODC_13755 purF amidophosphoribosyltransferase low > 87
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.88 BNILDI_13255 purF amidophosphoribosyltransferase 0.94 8
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.88 NOLOHH_14335 purF amidophosphoribosyltransferase 0.92 18
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.88 OKFHMN_22715 purF amidophosphoribosyltransferase 0.91 10
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.88 HEPCGN_21910 purF amidophosphoribosyltransferase 0.84 51
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.88 JDDGAC_26675 purF amidophosphoribosyltransferase low > 86
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.88 KEDOAH_05480 purF amidophosphoribosyltransferase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.88 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.39 72
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.88 NIAGMN_20485 purF amidophosphoribosyltransferase
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.88 ECOLIN_RS13405 amidophosphoribosyltransferase
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.88 EFB2_01546 Amidophosphoribosyltransferase low > 86
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.89 MPMX20_03247 Amidophosphoribosyltransferase 0.86 26
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.88 IAI47_06275 amidophosphoribosyltransferase 0.85 49
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.90 LU632_RS07865 purF amidophosphoribosyltransferase 0.93 5
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.75 CSW01_05115 amidophosphoribosyltransferase low > 62
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.74 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.80 11
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.73 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.88 40
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.73 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.90 25
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.73 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.93 19
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.64 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14)
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.70 MIT1002_02524 Amidophosphoribosyltransferase 0.94 43
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.63 AO353_20690 amidophosphoribosyltransferase
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.63 Psest_2579 amidophosphoribosyltransferase
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.63 OH686_04420 amidophosphoribosyltransferase
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.62 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14)
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.63 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.63 AO356_21465 amidophosphoribosyltransferase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.63 Psyr_1668 amidophosphoribosyltransferase
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.63 PP_2000 amidophosphoribosyl transferase 0.67 4
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.63 Psyr_1668 amidophosphoribosyltransferase
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.63 PS417_18535 amidophosphoribosyltransferase
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.63 PFLU_RS20515 amidophosphoribosyltransferase
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.63 PFLU_RS20515 amidophosphoribosyltransferase
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.63 PFR28_02811 Amidophosphoribosyltransferase
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.64 HP15_1821 amidophosphoribosyltransferase
Dechlorosoma suillum PS 0.68 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.58 Dsui_3186 amidophosphoribosyltransferase
Acinetobacter radioresistens SK82 0.68 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.63 MPMX26_01122 Amidophosphoribosyltransferase low > 36
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.56 RR42_RS14325 amidophosphoribosyltransferase
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.57 HSERO_RS16445 amidophosphoribosyltransferase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.59 LRK55_RS01105 amidophosphoribosyltransferase
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.58 ABIE51_RS06180 amidophosphoribosyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.57 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14)
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.59 LRK54_RS01340 amidophosphoribosyltransferase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.59 ABZR87_RS14465 amidophosphoribosyltransferase
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.60 ABZR86_RS06775 amidophosphoribosyltransferase
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.58 RPSI07_RS14765 amidophosphoribosyltransferase
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.55 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14)
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.54 QEN71_RS17680 amidophosphoribosyltransferase
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.58 UW163_RS11175 amidophosphoribosyltransferase
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.58 RALBFv3_RS02550 amidophosphoribosyltransferase
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.59 OKGIIK_05570 purF amidophosphoribosyltransferase 0.78 17
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.58 RS_RS09930 amidophosphoribosyltransferase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.54 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14)
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 ABID97_RS21635 amidophosphoribosyltransferase
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.53 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14)
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.57 H281DRAFT_06060 amidophosphoribosyltransferase
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.56 BPHYT_RS33840 amidophosphoribosyltransferase 0.72 5
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.57 ABIE53_004816 amidophosphoribosyltransferase
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.55 ABCV34_RS04130 amidophosphoribosyltransferase
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.30 AZOBR_RS08310 amidophosphoribosyltransferase
Azospirillum sp. SherDot2 0.51 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.30 MPMX19_00906 Amidophosphoribosyltransferase
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.28 AMB_RS10545 amidophosphoribosyltransferase
Rhodospirillum rubrum S1H 0.48 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.31 Rru_A0404 Amidophosphoribosyl transferase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.48 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 TX73_015990 amidophosphoribosyltransferase
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.29 PGA1_c10810 amidophosphoribosyltransferase PurF 0.67 32
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.28 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14)
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.30 A4249_RS03735 amidophosphoribosyltransferase
Sinorhizobium meliloti 1021 0.47 SMc01569 carbamoyl phosphate synthase small subunit 0.29 SMc00554 amidophosphoribosyltransferase 0.69 16
Dinoroseobacter shibae DFL-12 0.47 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.28 Dshi_2132 amidophosphoribosyltransferase (RefSeq)
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.30 ABIE41_RS17810 amidophosphoribosyltransferase
Rhizobium sp. OAE497 0.45 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 ABIE40_RS06270 amidophosphoribosyltransferase
Agrobacterium fabrum C58 0.45 Atu2170 carbamoylphosphate synthase small chain 0.29 Atu1075 amidophosphoribosyltransferase
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.32 CCNA_01730 amidophosphoribosyltransferase low > 67
Caulobacter crescentus NA1000 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.32 CCNA_01730 amidophosphoribosyltransferase
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.30 Synpcc7942_0004 purF amidophosphoribosyltransferase
Fusobacterium nucleatum SB010 0.40 HUW76_08755 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.25 HUW76_05170 amidophosphoribosyltransferase low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.29 DVU0161 purF amidophosphoribosyltransferase (TIGR)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.11 ABZR88_RS15630 class II glutamine amidotransferase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.31 BBR_RS13380 amidophosphoribosyltransferase low > 34
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.33 MMJJ_RS08440 amidophosphoribosyltransferase
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.28 DvMF_2307 amidophosphoribosyltransferase (RefSeq) 0.86 7
Methanococcus maripaludis S2 0.37 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 MMP_RS05915 amidophosphoribosyltransferase
Mycobacterium tuberculosis H37Rv 0.36 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.27 Rv0808 Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase)
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.13 BACOVA_03754 class II glutamine amidotransferase 0.67 2
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.12 HMPREF1078_RS10430 amidophosphoribosyltransferase low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.12 HMPREF1181_RS16065 amidophosphoribosyltransferase low > 56

Not shown: 7 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS15335 only