Conservation of cofitness between CSW01_09245 and CSW01_12250 in Vibrio cholerae E7946 ATCC 55056

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 0.86 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD — —
Escherichia coli BW25113 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.44 14
Escherichia coli Nissle 1917 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia fergusonii Becca 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.67 EFB2_01007 Tyrosine recombinase XerD — —
Escherichia coli BL21 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.67 ECD_02726 site-specific tyrosine recombinase — —
Escherichia coli ECRC62 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD — —
Rahnella sp. WP5 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD 0.64 3
Escherichia coli ECRC101 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR27 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC98 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Enterobacter sp. TBS_079 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.68 MPMX20_03753 Tyrosine recombinase XerD 0.47 1
Escherichia coli ECRC99 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.68 EX28DRAFT_2945 tyrosine recombinase XerD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF1640 Holliday junction DNA helicase RuvA 0.67 GFF2991 Tyrosine recombinase XerD — —
Klebsiella michiganensis M5al 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Shewanella loihica PV-4 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) — —
Alteromonas macleodii MIT1002 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.55 MIT1002_00786 Tyrosine recombinase XerD — —
Pantoea sp. MT58 0.63 IAI47_08445 Holliday junction branch migration protein RuvA 0.69 IAI47_03820 site-specific tyrosine recombinase XerD 0.37 1
Shewanella oneidensis MR-1 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.44 8
Shewanella sp. ANA-3 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Dickeya dadantii 3937 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD — —
Pectobacterium carotovorum WPP14 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola ME23 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Shewanella amazonensis SB2B 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) — —
Serratia liquefaciens MT49 0.60 IAI46_14625 Holliday junction branch migration protein RuvA 0.69 IAI46_20730 site-specific tyrosine recombinase XerD — —
Pseudomonas putida KT2440 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.58 PP_1468 Tyrosine recombinase XerD 0.38 10
Pseudomonas stutzeri RCH2 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.54 Psest_3129 tyrosine recombinase XerD 0.21 45
Pseudomonas sp. S08-1 0.55 OH686_19130 Holliday junction DNA helicase RuvA 0.56 OH686_17750 tyrosine recombinase XerD — —
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.57 Psyr_1286 tyrosine recombinase XerD subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_18020 ATP-dependent DNA helicase RuvA 0.58 AO356_06385 recombinase XerD 0.52 5
Pseudomonas sp. RS175 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.58 PFR28_00331 Tyrosine recombinase XerD 0.41 5
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_03585 ATP-dependent DNA helicase RuvA 0.58 AO353_04365 recombinase XerD 0.23 43
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.40 31
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.51 B158DRAFT_2265 tyrosine recombinase XerD 0.78 9
Marinobacter adhaerens HP15 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.53 HP15_762 site-specific tyrosine recombinase XerD — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.27 59
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas simiae WCS417 0.52 PS417_22450 ATP-dependent DNA helicase RuvA 0.57 PS417_22895 tyrosine recombinase XerD 0.35 5
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.63 11
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD — —
Lysobacter sp. OAE881 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.66 1
Dechlorosoma suillum PS 0.43 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.49 Dsui_1217 tyrosine recombinase XerD — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Variovorax sp. SCN45 0.41 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.47 GFF2772 Site-specific tyrosine recombinase XerD 0.67 122
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.51 BPHYT_RS15950 tyrosine recombinase XerD — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD low > 48
Variovorax sp. OAS795 0.39 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1666 Holliday junction DNA helicase RuvA 0.46 GFF5461 Tyrosine recombinase XerD low > 90
Paraburkholderia graminis OAS925 0.38 ABIE53_003494 Holliday junction DNA helicase RuvA 0.50 ABIE53_003361 integrase/recombinase XerD 0.40 5
Ralstonia solanacearum GMI1000 0.38 RS_RS02490 Holliday junction branch migration protein RuvA 0.50 RS_RS12755 tyrosine recombinase XerD — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum UW163 0.38 UW163_RS01915 Holliday junction branch migration protein RuvA 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.29 37
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.50 H281DRAFT_04126 integrase/recombinase XerD — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.42 20
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS02705 Holliday junction DNA helicase RuvA 0.48 RR42_RS03345 recombinase XerD low > 128
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.48 Ac3H11_302 Tyrosine recombinase XerD — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14545 Holliday junction branch migration protein RuvA 0.34 CA264_00850 site-specific tyrosine recombinase XerD — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS18995 Holliday junction branch migration protein RuvA 0.34 CA265_RS09520 site-specific tyrosine recombinase XerD 0.46 14
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.31 Echvi_1809 tyrosine recombinase XerD 0.29 38
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.32 ABZR88_RS10220 site-specific tyrosine recombinase XerD — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.34 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS15860 Holliday junction branch migration protein RuvA 0.30 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005655 Holliday junction branch migration protein RuvA 0.36 TX73_002625 site-specific tyrosine recombinase XerD — —
Bifidobacterium breve UCC2003 0.24 BBR_RS15655 Holliday junction branch migration protein RuvA 0.33 BBR_RS16755 site-specific tyrosine recombinase XerD 0.73 7
Rhodospirillum rubrum S1H 0.24 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.30 Ga0059261_3595 Site-specific recombinase XerD — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.33 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Magnetospirillum magneticum AMB-1 0.23 AMB_RS16255 Holliday junction branch migration protein RuvA 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD — —
Bosea sp. OAE506 0.23 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.33 BT2843 integrase (NCBI ptt file) — —
Mycobacterium tuberculosis H37Rv 0.23 Rv2593c Probable holliday junction DNA helicase RuvA 0.29 Rv2894c Probable integrase/recombinase XerC — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00691 Holliday junction DNA helicase RuvA 0.33 BACOVA_02123 tyrosine recombinase XerD — —
Rhizobium sp. OAE497 0.22 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.40 26
Sinorhizobium meliloti 1021 0.22 SMc03966 Holliday junction DNA helicase RuvA 0.36 SMc00691 site-specific tyrosine recombinase XerD — —
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.32 ABI39_RS07000 site-specific tyrosine recombinase XerD — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.31 PGA1_c14060 tyrosine recombinase XerD 0.51 2
Agrobacterium fabrum C58 0.22 Atu3723 Holliday junction DNA helicase RuvA 0.35 Atu3629 site-specific tyrosine recombinase XerD — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.32 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.33 DvMF_0359 tyrosine recombinase XerD (RefSeq) 0.52 4
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03345 Holliday junction DNA helicase RuvA 0.31 CCNA_03101 site-specific tyrosine recombinase XerD — —
Caulobacter crescentus NA1000 0.21 CCNA_03345 Holliday junction DNA helicase RuvA 0.31 CCNA_03101 site-specific tyrosine recombinase XerD 0.39 26
Azospirillum brasilense Sp245 0.20 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.34 AZOBR_RS03240 recombinase XerD — —
Azospirillum sp. SherDot2 0.19 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.38 MPMX19_02643 Tyrosine recombinase XerD — —

Not shown: 3 genomes with orthologs for CSW01_09245 only; 3 genomes with orthologs for CSW01_12250 only