Conservation of cofitness between CSW01_05185 and CSW01_06140 in Vibrio cholerae E7946 ATCC 55056

110 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05185 excinuclease ABC subunit UvrB 1.0 CSW01_06140 excinuclease ABC subunit C 0.50 15
Serratia liquefaciens MT49 0.78 IAI46_06550 excinuclease ABC subunit B 0.65 IAI46_09210 excinuclease ABC subunit UvrC 0.58 13
Erwinia tracheiphila SCR3 0.77 LU632_RS09160 uvrB excinuclease ABC subunit B 0.63 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 73
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_19590 uvrB excinuclease ABC subunit UvrB 0.63 IJEDHG_20740 uvrC excinuclease ABC subunit UvrC low > 61
Pectobacterium carotovorum WPP14 0.77 HER17_RS13420 excinuclease ABC subunit B 0.63 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Rahnella sp. WP5 0.77 EX31_RS23720 excinuclease ABC subunit B 0.65 EX31_RS24150 excinuclease ABC subunit UvrC 0.55 45
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS03805 excinuclease ABC subunit B 0.64 PagCFBP13505_RS04865 excinuclease ABC subunit UvrC low > 74
Pantoea sp. MT58 0.76 IAI47_13505 excinuclease ABC subunit B 0.65 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Escherichia coli Nissle 1917 0.76 ECOLIN_RS04150 excinuclease ABC subunit UvrB 0.64 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli ECRC101 0.76 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.64 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC102 0.76 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB 0.64 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECOR27 0.76 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB 0.64 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02934 UvrABC system protein B 0.64 OHPLBJKB_01816 UvrABC system protein C low > 74
Escherichia coli ECRC98 0.76 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.64 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC 0.46 39
Escherichia coli ECRC62 0.76 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.64 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECRC99 0.76 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB 0.64 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli BL21 0.76 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.65 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.63 15
Escherichia coli ECRC100 0.76 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB 0.64 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 79
Escherichia coli BW25113 0.76 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.64 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.87 2
Escherichia fergusonii Becca 0.76 EFB2_03326 UvrABC system protein B 0.64 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECOR38 0.76 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.64 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 88
Klebsiella michiganensis M5al 0.76 BWI76_RS08785 excinuclease ABC subunit B 0.65 BWI76_RS18330 excinuclease ABC subunit C 0.41 2
Dickeya dadantii 3937 0.76 DDA3937_RS08530 excinuclease ABC subunit B 0.65 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2211 Excinuclease ABC subunit B 0.63 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Shewanella loihica PV-4 0.76 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.57 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.92 2
Enterobacter sp. TBS_079 0.76 MPMX20_01408 UvrABC system protein B 0.63 MPMX20_02838 UvrABC system protein C 0.55 2
Dickeya dianthicola ME23 0.75 DZA65_RS08990 excinuclease ABC subunit B 0.64 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS08695 excinuclease ABC subunit B 0.64 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Klebsiella pneumoniae MKP103 0.75 KDGMDA_17050 excinuclease ABC subunit UvrB 0.65 KDGMDA_25595 excinuclease ABC subunit UvrC low > 95
Erwinia amylovora T8 0.75 OLJFJH_16735 excinuclease ABC subunit UvrB 0.64 OLJFJH_15790 excinuclease ABC subunit UvrC low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF675 Excinuclease ABC subunit B 0.64 GFF1700 Excinuclease ABC subunit C low > 78
Alteromonas macleodii MIT1002 0.75 MIT1002_01261 Excinuclease ABC subunit B 0.56 MIT1002_02153 Excinuclease ABC subunit C low > 70
Shewanella amazonensis SB2B 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.60 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.72 2
Shewanella oneidensis MR-1 0.74 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.58 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.71 2
Shewanella sp. ANA-3 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.58 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Pseudomonas sp. RS175 0.73 PFR28_02837 UvrABC system protein B 0.48 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_21335 excinuclease ABC subunit B 0.50 AO356_00350 excinuclease ABC subunit C 0.93 2
Pseudomonas aeruginosa PUPa3 0.72 DQ20_RS34340 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.52 DQ20_RS35325 uvrC;go_component=excinuclease excinuclease ABC subunit UvrC 0.51 3
Pseudomonas aeruginosa MRSN321 0.72 DY961_RS01215 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.52 DY961_RS04665 uvrC;go_component=excinuclease excinuclease ABC subunit UvrC low > 100
Pseudomonas aeruginosa PA14 0.72 IKLFDK_15985 excinuclease ABC subunit UvrB 0.52 IKLFDK_12970 excinuclease ABC subunit UvrC 0.64 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1974 Excinuclease ABC subunit B 0.51 Psyr_2896 Excinuclease ABC subunit C 0.84 2
Pseudomonas sp. DMC3 0.72 GFF774 UvrABC system protein B 0.50 GFF3645 UvrABC system protein C low > 89
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_52 Excinuclease ABC subunit B 0.48 Pf6N2E2_2021 Excinuclease ABC subunit C 0.81 2
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1974 Excinuclease ABC subunit B 0.51 Psyr_2896 Excinuclease ABC subunit C 0.82 2
Pseudomonas stutzeri RCH2 0.72 Psest_1296 excinuclease ABC, B subunit 0.52 Psest_2259 excinuclease ABC, C subunit 0.87 2
Pseudomonas orientalis W4I3 0.72 QF045_RS20805 excinuclease ABC subunit UvrB 0.50 QF045_RS12805 excinuclease ABC subunit UvrC low > 93
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_20545 excinuclease ABC subunit B 0.51 AO353_21835 excinuclease ABC subunit C 0.72 2
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_26 Excinuclease ABC subunit B 0.50 Pf1N1B4_5618 Excinuclease ABC subunit C 0.42 12
Pseudomonas putida KT2440 0.72 PP_1974 excinuclease UvrABC protein B 0.51 PP_4098 UvrABC system protein C — —
Pseudomonas fluorescens SBW25 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.50 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.50 PFLU_RS10770 excinuclease ABC subunit UvrC 0.34 8
Pseudomonas sp. SVBP6 0.72 COO64_RS05730 uvrB excinuclease ABC subunit UvrB 0.51 COO64_RS13930 uvrC excinuclease ABC subunit UvrC low > 93
Pseudomonas simiae WCS417 0.72 PS417_18685 excinuclease ABC subunit B 0.51 PS417_10725 excinuclease ABC subunit C 0.59 4
Pseudomonas sp. BP01 0.72 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB 0.51 JOY50_RS06865 uvrC excinuclease ABC subunit UvrC low > 84
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_03964 UvrABC system protein B 0.50 GEMAOFIL_02233 UvrABC system protein C low > 96
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_3959 Excinuclease ABC subunit B 0.51 PfGW456L13_2886 Excinuclease ABC subunit C 0.50 2
Pseudomonas segetis P6 0.71 MPMX49_03091 UvrABC system protein B 0.52 MPMX49_02521 UvrABC system protein C low > 75
Pseudomonas sp. S08-1 0.70 OH686_04580 excinuclease ABC subunit B 0.49 OH686_00340 excinuclease ABC subunit C low > 80
Marinobacter adhaerens HP15 0.70 HP15_1372 excinuclease ABC subunit B 0.47 HP15_1568 excinuclease ABC subunit C 0.76 13
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.43 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.92 3
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB 0.45 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC 0.60 33
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.42 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.32 68
Rhodanobacter denitrificans MT42 0.69 LRK55_RS13955 excinuclease ABC subunit UvrB 0.46 LRK55_RS00120 excinuclease ABC subunit UvrC 0.91 41
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS14235 excinuclease ABC subunit UvrB 0.46 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS14375 excinuclease ABC subunit UvrB 0.46 LRK53_RS09770 excinuclease ABC subunit UvrC low > 59
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_2341 Excinuclease ABC subunit B 0.44 B158DRAFT_1273 Excinuclease ABC subunit C 0.92 2
Acinetobacter baumannii LAC-4 0.67 RR41_RS04945 excinuclease ABC subunit UvrB 0.41 RR41_RS17435 excinuclease ABC subunit UvrC low > 55
Lysobacter sp. OAE881 0.67 ABIE51_RS15310 excinuclease ABC subunit UvrB 0.42 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.91 4
Dechlorosoma suillum PS 0.66 Dsui_2434 excinuclease ABC, B subunit 0.45 Dsui_2470 excinuclease ABC, C subunit 0.73 11
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.41 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.77 2
Acinetobacter radioresistens SK82 0.66 MPMX26_02142 UvrABC system protein B 0.40 MPMX26_00228 UvrABC system protein C 0.74 2
Ralstonia solanacearum PSI07 0.66 RPSI07_RS19240 excinuclease ABC subunit UvrB 0.40 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS14225 excinuclease ABC subunit UvrB 0.40 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.67 17
Ralstonia solanacearum UW163 0.66 UW163_RS11690 excinuclease ABC subunit UvrB 0.40 UW163_RS11990 excinuclease ABC subunit UvrC — —
Ralstonia solanacearum GMI1000 0.65 RS_RS05005 UvrABC system protein B 0.39 RS_RS05305 excinuclease ABC subunit UvrC 0.69 1
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS05995 excinuclease ABC subunit B 0.41 RR42_RS14000 excinuclease ABC subunit C 0.86 2
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.41 HSERO_RS09690 excinuclease ABC subunit C 0.68 3
Castellaniella sp019104865 MT123 0.64 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.38 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Methylophilus sp. DMC18 0.63 GFF1123 UvrABC system protein B 0.47 GFF496 UvrABC system protein C low > 43
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4114 Excinuclease ABC subunit B 0.36 Ac3H11_373 Excinuclease ABC subunit C low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4962 Excinuclease ABC subunit B 0.36 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. OAS795 0.62 ABID97_RS13995 excinuclease ABC subunit UvrB 0.39 ABID97_RS10635 excinuclease ABC subunit UvrC 0.87 1
Variovorax sp. SCN45 0.62 GFF945 Excinuclease ABC subunit B 0.39 GFF2859 Excinuclease ABC subunit C low > 127
Azospirillum brasilense Sp245 0.61 AZOBR_RS16420 excinuclease ABC subunit B 0.32 AZOBR_RS08965 excinuclease ABC subunit C 0.47 38
Azospirillum sp. SherDot2 0.60 MPMX19_01038 UvrABC system protein B 0.32 MPMX19_01070 UvrABC system protein C low > 112
Caulobacter crescentus NA1000 0.60 CCNA_03076 excinuclease ABC subunit B 0.32 CCNA_02975 excinuclease ABC subunit C 0.86 3
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_03076 excinuclease ABC subunit B 0.32 CCNA_02975 excinuclease ABC subunit C low > 67
Magnetospirillum magneticum AMB-1 0.59 AMB_RS19255 excinuclease ABC subunit UvrB 0.32 AMB_RS19240 UvrABC system protein C low > 64
Rhodospirillum rubrum S1H 0.58 Rru_A1133 Excinuclease ABC, B subunit (NCBI) 0.31 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.58 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.34 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.94 1
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.33 Ga0059261_3186 Excinuclease ABC subunit C 0.84 5
Brevundimonas sp. GW460-12-10-14-LB2 0.58 A4249_RS00555 excinuclease ABC subunit UvrB 0.32 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Phaeobacter inhibens DSM 17395 0.57 PGA1_c26160 uvrABC system protein B 0.33 PGA1_c02880 uvrABC system protein C 0.85 2
Sphingobium sp. HT1-2 0.56 GFF700 Excinuclease ABC subunit B 0.33 GFF3465 Excinuclease ABC subunit C low > 95
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.25 Synpcc7942_1945 uvrC excinuclease ABC subunit C low > 38
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS19430 excinuclease ABC subunit B 0.23 CA265_RS18110 excinuclease ABC subunit C 0.96 1
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.25 HMPREF1078_RS06310 excinuclease ABC subunit UvrC 0.65 60
Fusobacterium nucleatum SB010 0.55 HUW76_02625 excinuclease ABC subunit UvrB 0.25 HUW76_06695 excinuclease ABC subunit UvrC 0.96 3
Mycobacterium tuberculosis H37Rv 0.54 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.26 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Cellulophaga baltica 18 0.54 M666_RS19015 excinuclease ABC subunit UvrB 0.25 M666_RS03735 excinuclease ABC subunit UvrC low > 67
Synechocystis sp000284455 PCC 6803 0.54 SGL_RS14040 excinuclease ABC subunit UvrB 0.27 SGL_RS07280 excinuclease ABC subunit UvrC low > 52
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_1215 excinuclease ABC, B subunit 0.25 Echvi_0619 excinuclease ABC, C subunit 0.88 4
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_19110 excinuclease ABC subunit B 0.22 CA264_16350 excinuclease ABC subunit C 0.57 9
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.26 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.71 3
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.79 3
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB 0.26 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Bacteroides ovatus ATCC 8483 0.52 BACOVA_03714 excinuclease ABC, B subunit 0.25 BACOVA_01365 excinuclease ABC, C subunit 0.81 49
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS15225 excinuclease ABC subunit UvrB 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Methanococcus maripaludis JJ 0.51 MMJJ_RS01245 excinuclease ABC subunit UvrB 0.22 MMJJ_RS01240 excinuclease ABC subunit UvrC 0.56 7
Methanococcus maripaludis S2 0.50 MMP_RS03805 excinuclease ABC subunit UvrB 0.23 MMP_RS03810 excinuclease ABC subunit UvrC low > 25

Not shown: 7 genomes with orthologs for CSW01_05185 only; 4 genomes with orthologs for CSW01_06140 only