Conservation of cofitness between CSW01_09445 and CSW01_02875 in Vibrio cholerae E7946 ATCC 55056

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09445 transcription-repair coupling factor 1.0 CSW01_02875 DNA recombination/repair protein RecA 0.50 14
Rahnella sp. WP5 0.65 EX31_RS24520 transcription-repair coupling factor 0.82 EX31_RS07800 recombinase RecA low > 89
Escherichia coli ECOR38 0.65 HEPCGN_24015 mfd transcription-repair coupling factor 0.80 HEPCGN_19900 recA recombinase RecA low > 88
Serratia liquefaciens MT49 0.64 IAI46_10320 transcription-repair coupling factor 0.80 IAI46_03840 recombinase RecA low > 87
Escherichia coli BW25113 0.64 b1114 mfd transcription-repair coupling factor (NCBI) 0.80 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECRC99 0.64 KEDOAH_24285 mfd transcription-repair coupling factor 0.80 KEDOAH_07430 recA recombinase RecA — —
Escherichia fergusonii Becca 0.64 EFB2_02861 Transcription-repair-coupling factor 0.80 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC102 0.64 NIAGMN_24360 mfd transcription-repair coupling factor 0.80 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC101 0.64 MCAODC_22830 mfd transcription-repair coupling factor 0.80 MCAODC_11230 recA recombinase RecA low > 87
Escherichia coli ECRC100 0.64 OKFHMN_03470 mfd transcription-repair coupling factor 0.80 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC98 0.64 JDDGAC_07130 mfd transcription-repair coupling factor 0.80 JDDGAC_24370 recA recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_02552 Transcription-repair-coupling factor 0.80 OHPLBJKB_01035 Protein RecA low > 74
Escherichia coli ECRC62 0.64 BNILDI_19160 mfd transcription-repair coupling factor 0.80 BNILDI_11105 recA recombinase RecA low > 75
Escherichia coli ECOR27 0.64 NOLOHH_20995 mfd transcription-repair coupling factor 0.80 NOLOHH_12545 recA recombinase RecA low > 76
Escherichia coli BL21 0.64 ECD_01110 transcription-repair coupling factor 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 61
Pectobacterium carotovorum WPP14 0.64 HER17_RS08775 transcription-repair coupling factor 0.83 HER17_RS05045 recombinase RecA 0.55 8
Pantoea sp. MT58 0.64 IAI47_11975 transcription-repair coupling factor 0.80 IAI47_04300 recombinase RecA low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS11205 transcription-repair coupling factor 0.80 BWI76_RS22180 recombinase RecA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3397 Transcription-repair coupling factor 0.81 GFF4693 RecA protein — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.81 EX28DRAFT_2785 protein RecA — —
Enterobacter sp. TBS_079 0.64 MPMX20_01795 Transcription-repair-coupling factor 0.81 MPMX20_03580 Protein RecA low > 85
Dickeya dadantii 3937 0.64 DDA3937_RS13000 transcription-repair coupling factor 0.82 DDA3937_RS16245 recombinase RecA low > 74
Erwinia amylovora T8 0.64 OLJFJH_15445 transcription-repair coupling factor 0.80 OLJFJH_09575 recombinase RecA low > 58
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS19410 transcription-repair coupling factor 0.81 PagCFBP13505_RS16670 recombinase RecA low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS13065 transcription-repair coupling factor 0.82 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS13530 transcription-repair coupling factor 0.82 DZA65_RS17450 recombinase RecA — —
Erwinia tracheiphila SCR3 0.63 LU632_RS14730 mfd transcription-repair coupling factor 0.81 LU632_RS15735 recA recombinase RecA — —
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18800 transcription-repair coupling factor 0.81 KDGMDA_02850 recombinase RecA low > 95
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_00560 mfd transcription-repair coupling factor 0.81 IJEDHG_01625 recA recombinase RecA — —
Shewanella loihica PV-4 0.58 Shew_1630 transcription-repair coupling factor (RefSeq) 0.80 Shew_1215 recA recombinase A (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.57 MIT1002_01646 Transcription-repair-coupling factor 0.77 MIT1002_00955 Recombinase A low > 70
Shewanella oneidensis MR-1 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.81 SO3430 recA recA protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.81 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.72 Psest_2872 protein RecA low > 67
Shewanella amazonensis SB2B 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.80 Sama_1046 recA recombinase A (RefSeq) 0.37 47
Pseudomonas aeruginosa PA14 0.55 IKLFDK_15275 transcription-repair coupling factor 0.73 IKLFDK_18465 recombinase RecA low > 98
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS01955 mfd;go_function=nucleic transcription-repair coupling factor 0.73 DY961_RS14895 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.27 75
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS33625 mfd;go_function=nucleic transcription-repair coupling factor 0.73 DQ20_RS42235 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA low > 101
Pseudomonas sp. S08-1 0.55 OH686_21990 transcription-repair coupling factor 0.73 OH686_18205 protein RecA low > 80
Pseudomonas segetis P6 0.54 MPMX49_01844 Transcription-repair-coupling factor 0.73 MPMX49_03330 Protein RecA 0.44 29
Pseudomonas sp. SVBP6 0.54 COO64_RS09460 mfd transcription-repair coupling factor 0.73 COO64_RS19930 recA recombinase RecA low > 93
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1896 transcription-repair coupling factor 0.72 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1896 transcription-repair coupling factor 0.72 Psyr_1378 RecA protein 0.33 28
Pseudomonas sp. BP01 0.54 JOY50_RS25100 mfd transcription-repair coupling factor 0.72 JOY50_RS23780 recA recombinase RecA low > 84
Pseudomonas putida KT2440 0.54 PP_2148 transcription-repair coupling factor 0.72 PP_1629 Protein RecA low > 96
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_3916 Transcription-repair coupling factor 0.73 Pf1N1B4_3143 RecA protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00435 transcription-repair coupling factor 0.73 AO353_16805 recombinase RecA low > 101
Pseudomonas sp. RS175 0.54 PFR28_01123 Transcription-repair-coupling factor 0.73 PFR28_00472 Protein RecA low > 88
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4027 Transcription-repair coupling factor 0.73 PfGW456L13_4668 RecA protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_2278 Transcription-repair coupling factor 0.73 Pf6N2E2_2993 RecA protein — —
Pseudomonas simiae WCS417 0.53 PS417_07635 transcription-repair coupling factor 0.72 PS417_05815 recombinase RecA 0.20 77
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_02270 transcription-repair coupling factor 0.73 AO356_05670 recombinase RecA 0.37 81
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01659 Transcription-repair-coupling factor 0.73 GEMAOFIL_01333 Protein RecA low > 96
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07710 transcription-repair coupling factor 0.72 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07710 transcription-repair coupling factor 0.72 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas sp. DMC3 0.53 GFF1285 Transcription-repair-coupling factor 0.73 GFF2111 Protein RecA low > 89
Pseudomonas orientalis W4I3 0.53 QF045_RS10280 transcription-repair coupling factor 0.72 QF045_RS08730 recombinase RecA low > 93
Marinobacter adhaerens HP15 0.52 HP15_2257 transcription-repair-coupling factor 0.71 HP15_1048 recombinase A low > 73
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1800 transcription-repair coupling factor 0.72 B158DRAFT_1531 protein RecA low > 40
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02040 transcription-repair coupling factor 0.71 LRK54_RS14980 recombinase RecA low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS01815 transcription-repair coupling factor 0.71 LRK55_RS14695 recombinase RecA low > 63
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS21210 transcription-repair coupling factor 0.68 ABZR86_RS00660 recombinase RecA 0.40 18
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09105 mfd transcription-repair coupling factor 0.71 OKGIIK_03740 recA recombinase RecA — —
Lysobacter sp. OAE881 0.49 ABIE51_RS14320 transcription-repair coupling factor 0.69 ABIE51_RS07800 recombinase RecA low > 62
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS08005 transcription-repair coupling factor 0.71 LRK53_RS13640 recombinase RecA — —
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor 0.67 Xcc-8004.3111.1 RecA protein — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS13240 transcription-repair coupling factor 0.63 ABZR87_RS07965 recombinase RecA low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS22060 transcription-repair coupling factor 0.66 QEN71_RS02335 recombinase RecA — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS09290 helicase 0.66 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia graminis OAS925 0.47 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.66 ABIE53_003448 recombination protein RecA 0.43 55
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00880 transcription-repair coupling factor 0.66 H281DRAFT_04208 RecA protein low > 103
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS15180 transcription-repair coupling factor 0.65 HSERO_RS03270 protein RecA low > 78
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01445 transcription-repair coupling factor 0.63 RALBFv3_RS12010 recombinase RecA low > 76
Methylophilus sp. DMC18 0.46 GFF356 Transcription-repair-coupling factor 0.67 GFF841 Protein RecA low > 43
Ralstonia solanacearum UW163 0.46 UW163_RS14755 transcription-repair coupling factor 0.63 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum GMI1000 0.46 RS_RS08275 transcription-repair coupling factor 0.63 RS_RS02760 DNA recombination/repair protein RecA — —
Acinetobacter baumannii LAC-4 0.46 RR41_RS12305 transcription-repair coupling factor 0.71 RR41_RS08110 recombinase RecA — —
Acinetobacter radioresistens SK82 0.45 MPMX26_01319 Transcription-repair-coupling factor 0.71 MPMX26_01308 Protein RecA low > 36
Ralstonia solanacearum PSI07 0.45 RPSI07_RS16040 transcription-repair coupling factor 0.64 RPSI07_RS21260 recombinase RecA low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF4934 Transcription-repair coupling factor 0.62 GFF2500 RecA protein low > 90
Variovorax sp. OAS795 0.45 ABID97_RS17285 transcription-repair coupling factor 0.64 ABID97_RS02275 recombinase RecA low > 91
Variovorax sp. SCN45 0.45 GFF412 Transcription-repair coupling factor 0.64 GFF5390 RecA protein 0.48 50
Acidovorax sp. GW101-3H11 0.45 Ac3H11_328 Transcription-repair coupling factor 0.63 Ac3H11_1255 RecA protein — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS07845 transcription-repair coupling factor 0.63 RR42_RS03080 recombinase RecA 0.34 42
Dechlorosoma suillum PS 0.44 Dsui_2385 transcription-repair coupling factor Mfd 0.66 Dsui_0707 protein RecA 0.86 10
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08660 transcription-repair coupling factor 0.67 ABCV34_RS04460 recombinase RecA low > 48
Rhodopseudomonas palustris CGA009 0.33 TX73_013805 transcription-repair coupling factor 0.66 TX73_019940 recombinase RecA — —
Xanthobacter sp. DMC5 0.33 GFF946 Transcription-repair-coupling factor 0.65 GFF1169 Protein RecA — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.66 Ga0059261_0204 protein RecA low > 68
Rhodospirillum rubrum S1H 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS12390 transcription-repair coupling factor 0.65 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Azospirillum sp. SherDot2 0.32 MPMX19_00876 Transcription-repair-coupling factor 0.66 MPMX19_00869 Protein RecA — —
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.60 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.60 CCNA_01141 RecA protein 0.47 31
Sinorhizobium meliloti 1021 0.32 SMc04450 transcription-repair coupling factor 0.66 SMc00760 recombinase A low > 103
Dinoroseobacter shibae DFL-12 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.60 Dshi_1643 recA protein (RefSeq) low > 64
Agrobacterium fabrum C58 0.32 Atu1778 transcription-repair coupling factor 0.66 Atu1874 RecA protein 0.45 14
Sphingobium sp. HT1-2 0.32 GFF3606 Transcription-repair coupling factor 0.67 GFF3120 RecA protein low > 95
Bosea sp. OAE506 0.32 ABIE41_RS15825 transcription-repair coupling factor 0.63 ABIE41_RS13335 recombinase RecA low > 77
Phaeobacter inhibens DSM 17395 0.31 PGA1_c14920 transcription-repair-coupling factor Mfd 0.65 PGA1_c15260 protein recA (recombinase A) low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04775 transcription-repair coupling factor 0.64 A4249_RS12615 recombinase RecA low > 48
Rhizobium sp. OAE497 0.31 ABIE40_RS09310 transcription-repair coupling factor 0.67 ABIE40_RS10320 recombinase RecA low > 107
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_0285 transcription-repair coupling factor (RefSeq) 0.55 DvMF_0876 recA recombinase A (RefSeq) low > 51
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_1326 mfd transcription-repair coupling factor 0.56 Synpcc7942_0348 recA recombinase A — —
Bifidobacterium breve UCC2003 0.27 BBR_RS14115 transcription-repair coupling factor 0.61 BBR_RS16530 recombinase RecA low > 34
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.55 DVU1090 recA recA protein (TIGR) 0.44 8
Synechocystis sp000284455 PCC 6803 0.26 SGL_RS14485 transcription-repair coupling factor 0.59 SGL_RS18280 recombinase RecA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_15820 transcription-repair coupling factor 0.60 CA264_19695 DNA recombination/repair protein RecA — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS21070 transcription-repair coupling factor 0.56 CA265_RS00600 recombinase RecA 0.44 6

Not shown: 0 genomes with orthologs for CSW01_09445 only; 12 genomes with orthologs for CSW01_02875 only