Conservation of cofitness between CSW01_13680 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13680 DNA helicase RecG 1.0 CSW01_01015 DNA helicase II 0.90 1
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG 0.68 PagCFBP13505_RS15370 DNA helicase II low > 74
Pantoea sp. MT58 0.70 IAI47_00500 ATP-dependent DNA helicase RecG 0.69 IAI47_18390 DNA helicase II 0.49 49
Serratia liquefaciens MT49 0.69 IAI46_24905 ATP-dependent DNA helicase RecG 0.71 IAI46_00735 DNA helicase II 0.65 13
Klebsiella pneumoniae MKP103 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG 0.71 KDGMDA_09710 DNA helicase II 0.51 22
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.52 38
Erwinia amylovora T8 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG 0.68 OLJFJH_06425 DNA helicase II low > 58
Escherichia coli ECRC102 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.71 NIAGMN_12165 uvrD DNA helicase II 0.80 4
Escherichia coli ECRC98 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.71 JDDGAC_18035 uvrD DNA helicase II low > 87
Dickeya dadantii 3937 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.70 DDA3937_RS19880 DNA helicase II low > 74
Escherichia coli ECRC100 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.71 OKFHMN_14410 uvrD DNA helicase II low > 79
Escherichia coli ECRC101 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.71 MCAODC_04915 uvrD DNA helicase II 0.66 2
Escherichia coli ECRC99 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.71 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.71 HEPCGN_13115 uvrD DNA helicase II 0.90 1
Escherichia coli ECOR27 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.71 NOLOHH_06540 uvrD DNA helicase II low > 76
Escherichia fergusonii Becca 0.68 EFB2_00136 ATP-dependent DNA helicase RecG 0.71 EFB2_04824 DNA helicase II 0.48 11
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.71 OHPLBJKB_04237 DNA helicase II 0.67 11
Escherichia coli ECRC62 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.71 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli BL21 0.68 ECD_03509 ATP-dependent DNA helicase 0.71 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli Nissle 1917 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.71 ECOLIN_RS21885 DNA helicase II 0.80 1
Escherichia coli BW25113 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.64 2
Klebsiella michiganensis M5al 0.68 BWI76_RS27440 DNA helicase RecG 0.71 BWI76_RS01220 DNA-dependent helicase II 0.54 2
Enterobacter sp. TBS_079 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG 0.70 MPMX20_04463 DNA helicase II low > 85
Pectobacterium carotovorum WPP14 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG 0.70 HER17_RS01360 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.70 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.70 DZA65_RS21080 DNA helicase II low > 75
Enterobacter asburiae PDN3 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG 0.68 IJEDHG_08770 uvrD DNA helicase II — —
Erwinia tracheiphila SCR3 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.68 LU632_RS24125 uvrD DNA helicase II — —
Rahnella sp. WP5 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG 0.68 EX31_RS15175 DNA helicase II low > 89
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.55 3
Shewanella loihica PV-4 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.63 5
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.72 1
Alteromonas macleodii MIT1002 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG 0.65 MIT1002_00153 DNA helicase II low > 70
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.50 23
Pseudomonas segetis P6 0.57 MPMX49_00040 ATP-dependent DNA helicase RecG 0.58 MPMX49_00180 DNA helicase II low > 75
Pseudomonas stutzeri RCH2 0.57 Psest_4192 ATP-dependent DNA helicase RecG 0.59 Psest_4098 Superfamily I DNA and RNA helicases — —
Pseudomonas sp. BP01 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG 0.60 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas sp. S08-1 0.56 OH686_13505 ATP-dependent DNA helicase RecG 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas putida KT2440 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.50 9
Pseudomonas aeruginosa PA14 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.60 IKLFDK_26200 DNA helicase II 0.47 65
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS12615 recG;go_function=nucleic ATP-dependent DNA helicase RecG 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II low > 100
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS49510 recG;go_function=nucleic ATP-dependent DNA helicase RecG 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II 0.51 15
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.36 30
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.50 7
Pseudomonas sp. RS175 0.55 PFR28_04435 ATP-dependent DNA helicase RecG 0.59 PFR28_04523 DNA helicase II 0.30 17
Pseudomonas sp. DMC3 0.55 GFF427 ATP-dependent DNA helicase RecG 0.59 GFF512 DNA helicase II low > 89
Marinobacter adhaerens HP15 0.55 HP15_309 DNA helicase, ATP-dependent, RecG 0.56 HP15_3403 UvrD/REP helicase 0.64 18
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG 0.59 GEMAOFIL_00116 DNA helicase II 0.52 66
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.59 PFLU_RS29900 DNA helicase II 0.56 1
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.42 17
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas orientalis W4I3 0.55 QF045_RS02225 ATP-dependent DNA helicase RecG 0.59 QF045_RS02600 DNA helicase II 0.74 15
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_12380 ATP-dependent DNA helicase RecG 0.59 AO356_11990 DNA helicase II 0.52 11
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.59 AO353_10055 DNA helicase II 0.72 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.56 7
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.47 9
Pseudomonas sp. SVBP6 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG 0.60 COO64_RS01845 uvrD DNA helicase II 0.35 78
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.55 ABIE51_RS01985 DNA helicase II 0.93 1
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.54 LRK55_RS06595 DNA helicase II — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.55 ABZR86_RS16965 DNA helicase II 0.93 4
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.54 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.55 OKGIIK_16775 DNA helicase low > 53
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.87 1
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG 0.44 RR42_RS15090 DNA helicase low > 128
Methylophilus sp. DMC18 0.45 GFF2125 ATP-dependent DNA helicase RecG 0.48 GFF1664 DNA helicase II low > 43
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05675 DNA helicase RecG 0.42 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.45 UW163_RS07950 DNA helicase RecG 0.42 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum PSI07 0.45 RPSI07_RS11625 DNA helicase RecG 0.42 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.42 RS_RS11220 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.43 HSERO_RS02160 DNA-dependent helicase 0.46 29
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.44 QEN71_RS05110 3'-5' exonuclease — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Dechlorosoma suillum PS 0.42 Dsui_0311 ATP-dependent DNA helicase RecG 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.83 9
Castellaniella sp019104865 MT123 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.31 SMc01461 DNA helicase II protein 0.64 13
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG 0.34 AMB_RS03725 DNA helicase II — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.50 58
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.35 AZOBR_RS12445 DNA helicase II 0.31 87
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.31 HMPREF1078_RS03560 3'-5' exonuclease — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Sphingobium sp. HT1-2 0.33 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Phaeobacter inhibens DSM 17395 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.34 PGA1_c09450 DNA helicase II UvrD 0.47 10
Fusobacterium nucleatum SB010 0.32 HUW76_01465 ATP-dependent DNA helicase RecG 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Cellulophaga baltica 18 0.32 M666_RS15340 ATP-dependent DNA helicase RecG 0.30 M666_RS15390 3'-5' exonuclease — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.68 2
Bosea sp. OAE506 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.34 56
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.31 CA264_07795 ATP-dependent DNA helicase — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG 0.32 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Rhodospirillum rubrum S1H 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Mycobacterium tuberculosis H37Rv 0.24 Rv2973c Probable ATP-dependent DNA helicase RecG 0.33 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58

Not shown: 8 genomes with orthologs for CSW01_13680 only; 4 genomes with orthologs for CSW01_01015 only