Conservation of cofitness between CSW01_13560 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13560 methylenetetrahydrofolate reductase 1.0 CSW01_01015 DNA helicase II 0.68 7
Dickeya dianthicola 67-19 0.80 HGI48_RS20415 methylenetetrahydrofolate reductase 0.70 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS21460 methylenetetrahydrofolate reductase 0.70 DZA65_RS21080 DNA helicase II low > 75
Dickeya dadantii 3937 0.79 DDA3937_RS00960 methylenetetrahydrofolate reductase 0.70 DDA3937_RS19880 DNA helicase II low > 74
Enterobacter sp. TBS_079 0.79 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.70 MPMX20_04463 DNA helicase II low > 85
Escherichia coli BL21 0.79 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.71 ECD_03689 DNA-dependent ATPase I and helicase II
Escherichia coli ECRC102 0.79 NIAGMN_11420 metF methylenetetrahydrofolate reductase 0.71 NIAGMN_12165 uvrD DNA helicase II low > 80
Escherichia coli ECRC98 0.79 JDDGAC_17290 metF methylenetetrahydrofolate reductase 0.71 JDDGAC_18035 uvrD DNA helicase II low > 87
Escherichia coli ECRC101 0.79 MCAODC_04165 metF methylenetetrahydrofolate reductase 0.71 MCAODC_04915 uvrD DNA helicase II low > 87
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Escherichia coli ECRC99 0.79 KEDOAH_14495 metF methylenetetrahydrofolate reductase 0.71 KEDOAH_13740 uvrD DNA helicase II
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase 0.71 OHPLBJKB_04237 DNA helicase II low > 74
Escherichia coli ECRC100 0.79 OKFHMN_13665 metF methylenetetrahydrofolate reductase 0.71 OKFHMN_14410 uvrD DNA helicase II low > 79
Escherichia coli ECRC62 0.79 BNILDI_05725 metF methylenetetrahydrofolate reductase 0.71 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli BW25113 0.79 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) low > 76
Escherichia coli ECOR27 0.79 NOLOHH_05810 metF methylenetetrahydrofolate reductase 0.71 NOLOHH_06540 uvrD DNA helicase II low > 76
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13505_RS18450 methylenetetrahydrofolate reductase 0.68 PagCFBP13505_RS15370 DNA helicase II low > 74
Escherichia coli ECOR38 0.78 HEPCGN_12310 metF methylenetetrahydrofolate reductase 0.71 HEPCGN_13115 uvrD DNA helicase II low > 88
Pantoea sp. MT58 0.78 IAI47_00890 methylenetetrahydrofolate reductase 0.69 IAI47_18390 DNA helicase II low > 76
Rahnella sp. WP5 0.78 EX31_RS14205 methylenetetrahydrofolate reductase 0.68 EX31_RS15175 DNA helicase II low > 89
Klebsiella michiganensis M5al 0.78 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.71 BWI76_RS01220 DNA-dependent helicase II low > 92
Escherichia fergusonii Becca 0.78 EFB2_04672 5,10-methylenetetrahydrofolate reductase 0.71 EFB2_04824 DNA helicase II low > 86
Klebsiella pneumoniae MKP103 0.78 KDGMDA_09325 methylenetetrahydrofolate reductase 0.71 KDGMDA_09710 DNA helicase II low > 95
Escherichia coli Nissle 1917 0.78 ECOLIN_RS22760 methylenetetrahydrofolate reductase 0.71 ECOLIN_RS21885 DNA helicase II low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Erwinia amylovora T8 0.77 OLJFJH_06105 methylenetetrahydrofolate reductase 0.68 OLJFJH_06425 DNA helicase II low > 58
Pectobacterium carotovorum WPP14 0.76 HER17_RS00950 methylenetetrahydrofolate reductase 0.70 HER17_RS01360 DNA helicase II low > 75
Serratia liquefaciens MT49 0.76 IAI46_24530 methylenetetrahydrofolate reductase 0.71 IAI46_00735 DNA helicase II low > 87
Shewanella amazonensis SB2B 0.76 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.75 LU632_RS19630 metF methylenetetrahydrofolate reductase 0.68 LU632_RS24125 uvrD DNA helicase II
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_13030 metF methylenetetrahydrofolate reductase 0.68 IJEDHG_08770 uvrD DNA helicase II
Shewanella loihica PV-4 0.74 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Shewanella oneidensis MR-1 0.73 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.73 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.66 MIT1002_03670 5,10-methylenetetrahydrofolate reductase 0.65 MIT1002_00153 DNA helicase II low > 70
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_2461 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20) 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases low > 40
Sphingobium sp. HT1-2 0.54 GFF217 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases low > 68
Azospirillum sp. SherDot2 0.52 MPMX19_00635 5,10-methylenetetrahydrofolate reductase 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Azospirillum brasilense Sp245 0.51 AZOBR_RS09540 5 10-methylenetetrahydrofolate reductase 0.35 AZOBR_RS12445 DNA helicase II low > 97
Magnetospirillum magneticum AMB-1 0.51 AMB_RS02230 methylenetetrahydrofolate reductase 0.34 AMB_RS03725 DNA helicase II
Bosea sp. OAE506 0.49 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Rhodospirillum rubrum S1H 0.48 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] 0.32 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Rhizobium sp. OAE497 0.40 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Phaeobacter inhibens DSM 17395 0.39 PGA1_c11700 5,10-methylenetetrahydrofolate reductase MetF 0.34 PGA1_c09450 DNA helicase II UvrD low > 62
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] 0.44 QEN71_RS05110 3'-5' exonuclease
Dinoroseobacter shibae DFL-12 0.37 Dshi_2080 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq)
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD
Marinobacter adhaerens HP15 0.36 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein 0.56 HP15_3403 UvrD/REP helicase low > 73
Paraburkholderia graminis OAS925 0.36 ABIE53_000061 methylenetetrahydrofolate reductase (NADPH) 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase 0.45 BPHYT_RS13840 DNA-dependent helicase
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS01385 5,10-methylenetetrahydrofolate reductase 0.44 RR42_RS15090 DNA helicase low > 128
Pseudomonas sp. BP01 0.35 JOY50_RS09810 metF methylenetetrahydrofolate reductase [NAD(P)H] 0.60 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas putida KT2440 0.35 PP_4977 5,10-methylenetetrahydrofolate reductase 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex low > 96
Pseudomonas sp. RS175 0.35 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.59 PFR28_04523 DNA helicase II low > 88
Dechlorosoma suillum PS 0.35 Dsui_0640 5,10-methylenetetrahydrofolate reductase 0.45 Dsui_1227 DNA/RNA helicase, superfamily I
Sinorhizobium meliloti 1021 0.35 SMc01843 5,10-methylenetetrahydrofolate reductase 0.31 SMc01461 DNA helicase II protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA low > 87
Pseudomonas sp. DMC3 0.35 GFF171 5,10-methylenetetrahydrofolate reductase 0.59 GFF512 DNA helicase II low > 89
Ralstonia solanacearum GMI1000 0.35 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum UW163 0.35 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 UW163_RS09895 DNA-dependent helicase
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA low > 103
Pseudomonas orientalis W4I3 0.35 QF045_RS00905 methylenetetrahydrofolate reductase [NAD(P)H] 0.59 QF045_RS02600 DNA helicase II low > 93
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 RPSI07_RS13455 DNA-dependent helicase
Pseudomonas sp. S08-1 0.35 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 RALBFv3_RS03775 DNA-dependent helicase
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas stutzeri RCH2 0.34 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.59 Psest_4098 Superfamily I DNA and RNA helicases low > 67
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.59 AO356_11990 DNA helicase II low > 104
Pseudomonas fluorescens SBW25 0.34 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas segetis P6 0.34 MPMX49_00645 5,10-methylenetetrahydrofolate reductase 0.58 MPMX49_00180 DNA helicase II low > 75
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.59 AO353_10055 DNA helicase II low > 101
Pseudomonas aeruginosa PUPa3 0.34 DQ20_RS37170 metF;go_function=methylenetetrahydrofolate methylenetetrahydrofolate reductase [NAD(P)H] 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II low > 101
Pseudomonas sp. SVBP6 0.34 COO64_RS17485 metF methylenetetrahydrofolate reductase [NAD(P)H] 0.60 COO64_RS01845 uvrD DNA helicase II low > 93
Pseudomonas aeruginosa PA14 0.34 IKLFDK_23270 methylenetetrahydrofolate reductase [NAD(P)H] 0.60 IKLFDK_26200 DNA helicase II low > 98
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Pseudomonas aeruginosa MRSN321 0.34 DY961_RS22135 metF;go_function=methylenetetrahydrofolate methylenetetrahydrofolate reductase [NAD(P)H] 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II low > 100
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.55 ABZR86_RS16965 DNA helicase II low > 74
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] 0.54 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter denitrificans MT42 0.34 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] 0.54 LRK55_RS06595 DNA helicase II
Methylophilus sp. DMC18 0.34 GFF1492 5,10-methylenetetrahydrofolate reductase 0.48 GFF1664 DNA helicase II
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_05433 5,10-methylenetetrahydrofolate reductase 0.59 GEMAOFIL_00116 DNA helicase II low > 96
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA low > 87
Lysobacter sp. OAE881 0.34 ABIE51_RS16490 methylenetetrahydrofolate reductase [NAD(P)H] 0.55 ABIE51_RS01985 DNA helicase II low > 62
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] 0.55 OKGIIK_16775 DNA helicase low > 53
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Rhodanobacter sp000427505 FW510-R12 0.33 LRK53_RS16505 methylenetetrahydrofolate reductase [NAD(P)H] 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA
Variovorax sp. OAS795 0.31 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Variovorax sp. SCN45 0.31 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU0997 metF 5,10-methylenetetrahydrofolate reductase (TIGR) 0.19 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Fusobacterium nucleatum SB010 0.26 HUW76_02285 methylenetetrahydrofolate reductase [NAD(P)H] 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_3034 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq)
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_3637 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.33 Echvi_0292 Superfamily I DNA and RNA helicases
Cellulophaga baltica 18 0.21 M666_RS08215 methylenetetrahydrofolate reductase [NAD(P)H] 0.30 M666_RS15390 3'-5' exonuclease
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] 0.31 CA265_RS12980 ATP-dependent DNA helicase
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS15570 methylenetetrahydrofolate reductase [NAD(P)H] 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS07860 methylenetetrahydrofolate reductase [NAD(P)H] 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS01490 methylenetetrahydrofolate reductase [NAD(P)H] 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS20935 methylenetetrahydrofolate reductase [NAD(P)H] 0.31 ABZR88_RS07840 ATP-dependent helicase
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_16780 methylenetetrahydrofolate reductase [NAD(P)H] 0.31 CA264_07795 ATP-dependent DNA helicase
Bacteroides thetaiotaomicron VPI-5482 0.19 BT3821 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file)
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS00120 methylenetetrahydrofolate reductase [NAD(P)H] 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides ovatus ATCC 8483 0.16 BACOVA_03666 methylenetetrahydrofolate reductase (NAD(P)H) 0.31 BACOVA_02365 UvrD/REP helicase low > 96

Not shown: 9 genomes with orthologs for CSW01_13560 only; 3 genomes with orthologs for CSW01_01015 only