Conservation of cofitness between CSW01_05185 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05185 excinuclease ABC subunit UvrB 1.0 CSW01_01015 DNA helicase II 0.52 11
Serratia liquefaciens MT49 0.78 IAI46_06550 excinuclease ABC subunit B 0.71 IAI46_00735 DNA helicase II 0.54 17
Erwinia tracheiphila SCR3 0.77 LU632_RS09160 uvrB excinuclease ABC subunit B 0.68 LU632_RS24125 uvrD DNA helicase II — —
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_19590 uvrB excinuclease ABC subunit UvrB 0.68 IJEDHG_08770 uvrD DNA helicase II — —
Pectobacterium carotovorum WPP14 0.77 HER17_RS13420 excinuclease ABC subunit B 0.70 HER17_RS01360 DNA helicase II low > 75
Rahnella sp. WP5 0.77 EX31_RS23720 excinuclease ABC subunit B 0.68 EX31_RS15175 DNA helicase II low > 89
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS03805 excinuclease ABC subunit B 0.68 PagCFBP13505_RS15370 DNA helicase II low > 74
Pantoea sp. MT58 0.76 IAI47_13505 excinuclease ABC subunit B 0.69 IAI47_18390 DNA helicase II low > 76
Escherichia coli ECOR27 0.76 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB 0.71 NOLOHH_06540 uvrD DNA helicase II low > 76
Escherichia coli ECRC100 0.76 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB 0.71 OKFHMN_14410 uvrD DNA helicase II low > 79
Escherichia coli ECRC102 0.76 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB 0.71 NIAGMN_12165 uvrD DNA helicase II low > 80
Escherichia coli ECRC99 0.76 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB 0.71 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.76 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.71 JDDGAC_18035 uvrD DNA helicase II low > 87
Escherichia coli Nissle 1917 0.76 ECOLIN_RS04150 excinuclease ABC subunit UvrB 0.71 ECOLIN_RS21885 DNA helicase II 0.61 24
Escherichia coli ECRC62 0.76 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.71 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02934 UvrABC system protein B 0.71 OHPLBJKB_04237 DNA helicase II low > 74
Escherichia coli BL21 0.76 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.71 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECRC101 0.76 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.71 MCAODC_04915 uvrD DNA helicase II low > 87
Escherichia coli BW25113 0.76 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.61 6
Escherichia fergusonii Becca 0.76 EFB2_03326 UvrABC system protein B 0.71 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECOR38 0.76 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.71 HEPCGN_13115 uvrD DNA helicase II 0.55 19
Klebsiella michiganensis M5al 0.76 BWI76_RS08785 excinuclease ABC subunit B 0.71 BWI76_RS01220 DNA-dependent helicase II low > 92
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2211 Excinuclease ABC subunit B 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Dickeya dadantii 3937 0.76 DDA3937_RS08530 excinuclease ABC subunit B 0.70 DDA3937_RS19880 DNA helicase II low > 74
Enterobacter sp. TBS_079 0.76 MPMX20_01408 UvrABC system protein B 0.70 MPMX20_04463 DNA helicase II low > 85
Shewanella loihica PV-4 0.76 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.68 13
Dickeya dianthicola 67-19 0.75 HGI48_RS08695 excinuclease ABC subunit B 0.70 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.75 DZA65_RS08990 excinuclease ABC subunit B 0.70 DZA65_RS21080 DNA helicase II low > 75
Klebsiella pneumoniae MKP103 0.75 KDGMDA_17050 excinuclease ABC subunit UvrB 0.71 KDGMDA_09710 DNA helicase II low > 95
Erwinia amylovora T8 0.75 OLJFJH_16735 excinuclease ABC subunit UvrB 0.68 OLJFJH_06425 DNA helicase II low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF675 Excinuclease ABC subunit B 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Alteromonas macleodii MIT1002 0.75 MIT1002_01261 Excinuclease ABC subunit B 0.65 MIT1002_00153 DNA helicase II low > 70
Shewanella amazonensis SB2B 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.37 27
Shewanella oneidensis MR-1 0.74 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.42 15
Shewanella sp. ANA-3 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_21335 excinuclease ABC subunit B 0.59 AO356_11990 DNA helicase II 0.67 9
Pseudomonas sp. RS175 0.73 PFR28_02837 UvrABC system protein B 0.59 PFR28_04523 DNA helicase II low > 88
Pseudomonas aeruginosa PA14 0.72 IKLFDK_15985 excinuclease ABC subunit UvrB 0.60 IKLFDK_26200 DNA helicase II 0.28 58
Pseudomonas aeruginosa MRSN321 0.72 DY961_RS01215 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II low > 100
Pseudomonas aeruginosa PUPa3 0.72 DQ20_RS34340 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II low > 101
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_52 Excinuclease ABC subunit B 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.59 9
Pseudomonas sp. DMC3 0.72 GFF774 UvrABC system protein B 0.59 GFF512 DNA helicase II low > 89
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1974 Excinuclease ABC subunit B 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1974 Excinuclease ABC subunit B 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.27 34
Pseudomonas stutzeri RCH2 0.72 Psest_1296 excinuclease ABC, B subunit 0.59 Psest_4098 Superfamily I DNA and RNA helicases 0.32 20
Pseudomonas orientalis W4I3 0.72 QF045_RS20805 excinuclease ABC subunit UvrB 0.59 QF045_RS02600 DNA helicase II low > 93
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_20545 excinuclease ABC subunit B 0.59 AO353_10055 DNA helicase II 0.44 22
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_26 Excinuclease ABC subunit B 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.39 18
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.59 PFLU_RS29900 DNA helicase II 0.23 101
Pseudomonas putida KT2440 0.72 PP_1974 excinuclease UvrABC protein B 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex — —
Pseudomonas sp. SVBP6 0.72 COO64_RS05730 uvrB excinuclease ABC subunit UvrB 0.60 COO64_RS01845 uvrD DNA helicase II low > 93
Pseudomonas fluorescens SBW25 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas sp. BP01 0.72 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB 0.60 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_03964 UvrABC system protein B 0.59 GEMAOFIL_00116 DNA helicase II low > 96
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_3959 Excinuclease ABC subunit B 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.26 41
Pseudomonas segetis P6 0.71 MPMX49_03091 UvrABC system protein B 0.58 MPMX49_00180 DNA helicase II low > 75
Pseudomonas sp. S08-1 0.70 OH686_04580 excinuclease ABC subunit B 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Marinobacter adhaerens HP15 0.70 HP15_1372 excinuclease ABC subunit B 0.56 HP15_3403 UvrD/REP helicase 0.79 9
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.55 ABZR86_RS16965 DNA helicase II 0.90 5
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB 0.55 OKGIIK_16775 DNA helicase 0.83 3
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA 0.35 38
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS14235 excinuclease ABC subunit UvrB 0.54 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS13955 excinuclease ABC subunit UvrB 0.54 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS14375 excinuclease ABC subunit UvrB 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_2341 Excinuclease ABC subunit B 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.70 7
Lysobacter sp. OAE881 0.67 ABIE51_RS15310 excinuclease ABC subunit UvrB 0.55 ABIE51_RS01985 DNA helicase II 0.79 21
Dechlorosoma suillum PS 0.66 Dsui_2434 excinuclease ABC, B subunit 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.81 5
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.66 RPSI07_RS19240 excinuclease ABC subunit UvrB 0.42 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS14225 excinuclease ABC subunit UvrB 0.42 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.66 UW163_RS11690 excinuclease ABC subunit UvrB 0.42 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS05005 UvrABC system protein B 0.42 RS_RS11220 DNA-dependent helicase low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS23870 excinuclease ABC subunit UvrB 0.44 QEN71_RS05110 3'-5' exonuclease — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS05995 excinuclease ABC subunit B 0.44 RR42_RS15090 DNA helicase 0.56 10
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04973 Excinuclease ABC subunit B 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia graminis OAS925 0.65 ABIE53_001645 excinuclease ABC subunit B 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS06905 excinuclease ABC subunit B 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.43 HSERO_RS02160 DNA-dependent helicase 0.39 33
Castellaniella sp019104865 MT123 0.64 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Methylophilus sp. DMC18 0.63 GFF1123 UvrABC system protein B 0.48 GFF1664 DNA helicase II low > 43
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4114 Excinuclease ABC subunit B 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4962 Excinuclease ABC subunit B 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. OAS795 0.62 ABID97_RS13995 excinuclease ABC subunit UvrB 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein 0.62 15
Variovorax sp. SCN45 0.62 GFF945 Excinuclease ABC subunit B 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Azospirillum brasilense Sp245 0.61 AZOBR_RS16420 excinuclease ABC subunit B 0.35 AZOBR_RS12445 DNA helicase II 0.41 92
Azospirillum sp. SherDot2 0.60 MPMX19_01038 UvrABC system protein B 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Magnetospirillum magneticum AMB-1 0.59 AMB_RS19255 excinuclease ABC subunit UvrB 0.34 AMB_RS03725 DNA helicase II low > 64
Rhodospirillum rubrum S1H 0.58 Rru_A1133 Excinuclease ABC, B subunit (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) 0.77 5
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.93 2
Dinoroseobacter shibae DFL-12 0.58 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.58 A4249_RS00555 excinuclease ABC subunit UvrB 0.32 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Phaeobacter inhibens DSM 17395 0.57 PGA1_c26160 uvrABC system protein B 0.34 PGA1_c09450 DNA helicase II UvrD 0.50 14
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) 0.19 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq) 0.46 8
Sphingobium sp. HT1-2 0.56 GFF700 Excinuclease ABC subunit B 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS19430 excinuclease ABC subunit B 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Fusobacterium nucleatum SB010 0.55 HUW76_02625 excinuclease ABC subunit UvrB 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Mycobacterium tuberculosis H37Rv 0.54 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.33 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Cellulophaga baltica 18 0.54 M666_RS19015 excinuclease ABC subunit UvrB 0.30 M666_RS15390 3'-5' exonuclease — —
Synechocystis sp000284455 PCC 6803 0.54 SGL_RS14040 excinuclease ABC subunit UvrB 0.30 SGL_RS06660 DNA helicase PcrA low > 52
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_1215 excinuclease ABC, B subunit 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_19110 excinuclease ABC subunit B 0.31 CA264_07795 ATP-dependent DNA helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.59 22
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Bacteroides ovatus ATCC 8483 0.52 BACOVA_03714 excinuclease ABC, B subunit 0.31 BACOVA_02365 UvrD/REP helicase low > 96
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS15225 excinuclease ABC subunit UvrB 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56

Not shown: 8 genomes with orthologs for CSW01_05185 only; 3 genomes with orthologs for CSW01_01015 only