Conservation of cofitness between CSW01_02875 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

111 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_01015 DNA helicase II 0.62 5
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.70 HER17_RS01360 DNA helicase II low > 75
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.68 EX31_RS15175 DNA helicase II low > 89
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.70 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.70 DZA65_RS21080 DNA helicase II — —
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.70 HGI48_RS20035 DNA helicase II low > 71
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.68 LU632_RS24125 uvrD DNA helicase II — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.68 IJEDHG_08770 uvrD DNA helicase II — —
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.59 6
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.70 MPMX20_04463 DNA helicase II low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS16670 recombinase RecA 0.68 PagCFBP13505_RS15370 DNA helicase II low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA — —
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.71 KDGMDA_09710 DNA helicase II 0.23 93
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.71 BWI76_RS01220 DNA-dependent helicase II — —
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.69 IAI47_18390 DNA helicase II 0.43 30
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) low > 76
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.71 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.71 HEPCGN_13115 uvrD DNA helicase II low > 88
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.71 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.71 OHPLBJKB_04237 DNA helicase II 0.37 11
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.71 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.71 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.71 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.71 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.71 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.71 NOLOHH_06540 uvrD DNA helicase II low > 76
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.71 MCAODC_04915 uvrD DNA helicase II low > 87
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.71 ECOLIN_RS21885 DNA helicase II — —
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.62 3
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.68 OLJFJH_06425 DNA helicase II low > 58
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.71 IAI46_00735 DNA helicase II low > 87
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.65 MIT1002_00153 DNA helicase II 0.53 37
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.59 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.59 AO353_10055 DNA helicase II 0.55 3
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.59 AO356_11990 DNA helicase II 0.37 38
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.60 IKLFDK_26200 DNA helicase II 0.55 29
Pseudomonas aeruginosa MRSN321 0.73 DY961_RS14895 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II 0.34 36
Pseudomonas aeruginosa PUPa3 0.73 DQ20_RS42235 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II 0.65 2
Pseudomonas segetis P6 0.73 MPMX49_03330 Protein RecA 0.58 MPMX49_00180 DNA helicase II low > 75
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.59 GFF512 DNA helicase II low > 89
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.60 COO64_RS01845 uvrD DNA helicase II 0.39 55
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.42 9
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.50 5
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.59 GEMAOFIL_00116 DNA helicase II low > 96
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas orientalis W4I3 0.72 QF045_RS08730 recombinase RecA 0.59 QF045_RS02600 DNA helicase II low > 93
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.59 Psest_4098 Superfamily I DNA and RNA helicases 0.17 65
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.58 22
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.34 11
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.62 1
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.60 JOY50_RS08735 uvrD DNA helicase II low > 84
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.54 LRK54_RS06850 DNA helicase II 0.68 3
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.56 HP15_3403 UvrD/REP helicase 0.33 5
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.54 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.55 OKGIIK_16775 DNA helicase — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.55 ABIE51_RS01985 DNA helicase II 0.69 3
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.55 ABZR86_RS16965 DNA helicase II 0.84 3
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.48 GFF1664 DNA helicase II low > 43
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Rhizobium sp. OAE497 0.67 ABIE40_RS10320 recombinase RecA 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA — —
Sphingobium sp. HT1-2 0.67 GFF3120 RecA protein 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Rhodospirillum rubrum S1H 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) — —
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Sphingomonas koreensis DSMZ 15582 0.66 Ga0059261_0204 protein RecA 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.60 6
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.44 QEN71_RS05110 3'-5' exonuclease — —
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.79 8
Azospirillum brasilense Sp245 0.66 AZOBR_RS11095 recombinase RecA 0.35 AZOBR_RS12445 DNA helicase II 0.38 52
Sinorhizobium meliloti 1021 0.66 SMc00760 recombinase A 0.31 SMc01461 DNA helicase II protein 0.50 10
Azospirillum sp. SherDot2 0.66 MPMX19_00869 Protein RecA 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Magnetospirillum magneticum AMB-1 0.65 AMB_RS03205 DNA recombination/repair protein RecA 0.34 AMB_RS03725 DNA helicase II low > 64
Phaeobacter inhibens DSM 17395 0.65 PGA1_c15260 protein recA (recombinase A) 0.34 PGA1_c09450 DNA helicase II UvrD 0.25 30
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Brevundimonas sp. GW460-12-10-14-LB2 0.64 A4249_RS12615 recombinase RecA 0.32 A4249_RS04960 UvrD-helicase domain-containing protein 0.45 16
Variovorax sp. SCN45 0.64 GFF5390 RecA protein 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.42 RPSI07_RS13455 DNA-dependent helicase — —
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.42 RALBFv3_RS03775 DNA-dependent helicase — —
Bosea sp. OAE506 0.63 ABIE41_RS13335 recombinase RecA 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.42 66
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.42 UW163_RS09895 DNA-dependent helicase — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.44 RR42_RS15090 DNA helicase low > 128
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.42 RS_RS11220 DNA-dependent helicase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_19695 DNA recombination/repair protein RecA 0.31 CA264_07795 ATP-dependent DNA helicase — —
Dinoroseobacter shibae DFL-12 0.60 Dshi_1643 recA protein (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Synechocystis sp000284455 PCC 6803 0.59 SGL_RS18280 recombinase RecA 0.30 SGL_RS06660 DNA helicase PcrA — —
Cellulophaga baltica 18 0.59 M666_RS05260 recombinase RecA 0.30 M666_RS15390 3'-5' exonuclease — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.57 ABZR88_RS16740 recombinase RecA 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Phocaeicola dorei CL03T12C01 0.57 ABI39_RS11930 recombinase RecA 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS15965 recombinase RecA 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.67 2
Pedobacter sp. GW460-11-11-14-LB5 0.56 CA265_RS00600 recombinase RecA 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_0044 protein RecA 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0348 recA recombinase A 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS00095 recombinase RecA 0.31 HMPREF1078_RS03560 3'-5' exonuclease 0.81 30
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11910 recombinase RecA 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides ovatus ATCC 8483 0.55 BACOVA_05402 RecA protein 0.31 BACOVA_02365 UvrD/REP helicase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.55 BT4610 RecA (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Desulfovibrio vulgaris Hildenborough JW710 0.55 DVU1090 recA recA protein (TIGR) 0.19 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0876 recA recombinase A (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq) 0.59 4
Fusobacterium nucleatum SB010 0.52 HUW76_07355 recombinase RecA 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35

Not shown: 9 genomes with orthologs for CSW01_02875 only; 1 genomes with orthologs for CSW01_01015 only