Conservation of cofitness between BPHYT_RS02610 and BPHYT_RS33875 in Burkholderia phytofirmans PsJN

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 1.0 BPHYT_RS33875 tryptophan synthase subunit alpha 0.79 6
Paraburkholderia bryophila 376MFSha3.1 0.95 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.97 H281DRAFT_06067 tryptophan synthase, beta chain 0.57 6
Paraburkholderia graminis OAS925 0.92 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.97 ABIE53_004809 tryptophan synthase beta chain
Paraburkholderia sabiae LMG 24235 0.85 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.96 QEN71_RS17645 tryptophan synthase subunit beta 0.72 53
Ralstonia solanacearum GMI1000 0.62 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.88 RS_RS09965 tryptophan synthase subunit beta
Ralstonia solanacearum UW163 0.60 UW163_RS02660 glycerol-3-phosphate dehydrogenase 0.88 UW163_RS11140 tryptophan synthase subunit beta
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase 0.88 RALBFv3_RS02585 tryptophan synthase subunit beta
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.88 ABZR87_RS14500 tryptophan synthase subunit beta 0.68 22
Ralstonia solanacearum PSI07 0.58 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase 0.88 RPSI07_RS14730 tryptophan synthase subunit beta 0.84 7
Castellaniella sp019104865 MT123 0.56 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.81 ABCV34_RS08435 tryptophan synthase subunit beta
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS00795 glycerol-3-phosphate dehydrogenase 0.79 HSERO_RS16475 tryptophan synthase subunit alpha 0.60 42
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS01845 glycerol-3-phosphate dehydrogenase 0.90 RR42_RS14360 tryptophan synthase subunit alpha 0.61 36
Variovorax sp. SCN45 0.50 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.78 GFF3883 Tryptophan synthase beta chain (EC 4.2.1.20)
Variovorax sp. OAS795 0.49 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.77 ABID97_RS08430 tryptophan synthase subunit beta low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.79 GFF3355 Tryptophan synthase beta chain (EC 4.2.1.20) low > 90
Acidovorax sp. GW101-3H11 0.46 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.77 Ac3H11_1534 Tryptophan synthase beta chain (EC 4.2.1.20) 0.76 22
Dechlorosoma suillum PS 0.43 Dsui_1277 glycerol-3-phosphate dehydrogenase 0.85 Dsui_3192 tryptophan synthase, beta subunit
Lysobacter sp. OAE881 0.42 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.71 ABIE51_RS08260 tryptophan synthase subunit beta
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) 0.57 DVU0085 trpB-1 tryptophan synthase, beta subunit (TIGR) low > 55
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.71 Xcc-8004.1964.1 Tryptophan synthase beta chain (EC 4.2.1.20) 0.62 34
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase 0.54 B158DRAFT_2429 tryptophan synthase, beta subunit
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase 0.70 OKGIIK_04845 trpB tryptophan synthase subunit beta
Shewanella loihica PV-4 0.39 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.54 Shew_2255 tryptophan synthase subunit beta (RefSeq)
Shewanella sp. ANA-3 0.38 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.53 Shewana3_1516 tryptophan synthase subunit beta (RefSeq)
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.70 LRK54_RS01685 tryptophan synthase subunit beta
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.72 ABZR86_RS08000 tryptophan synthase subunit beta
Rhodanobacter denitrificans MT42 0.38 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 LRK55_RS01465 tryptophan synthase subunit beta
Shewanella amazonensis SB2B 0.38 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.53 Sama_2133 tryptophan synthase subunit beta (RefSeq)
Shewanella oneidensis MR-1 0.38 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file) 0.53 SO3023 trpB tryptophan synthase, beta subunit (NCBI ptt file)
Alteromonas macleodii MIT1002 0.38 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.53 MIT1002_01426 Tryptophan synthase beta chain
Rhodospirillum rubrum S1H 0.37 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) 0.66 Rru_A3427 Tryptophan synthase, beta chain (NCBI) 0.53 43
Azospirillum sp. SherDot2 0.37 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.67 MPMX19_02736 Tryptophan synthase beta chain 0.62 46
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase 0.67 Ga0059261_0238 tryptophan synthase, beta subunit
Azospirillum brasilense Sp245 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase 0.68 AZOBR_RS00525 tryptophan synthase subunit beta 0.75 14
Pectobacterium carotovorum WPP14 0.36 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 HER17_RS10935 tryptophan synthase subunit beta low > 75
Serratia liquefaciens MT49 0.36 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 IAI46_14040 tryptophan synthase subunit beta low > 86
Rahnella sp. WP5 0.36 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 EX31_RS09975 tryptophan synthase subunit beta 0.74 26
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.53 OHPLBJKB_02422 Tryptophan synthase beta chain
Escherichia coli ECRC98 0.36 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 JDDGAC_05215 trpB tryptophan synthase subunit beta
Escherichia coli ECRC99 0.36 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 KEDOAH_26080 trpB tryptophan synthase subunit beta
Dickeya dadantii 3937 0.36 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 DDA3937_RS10465 tryptophan synthase subunit beta
Escherichia coli Nissle 1917 0.36 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 ECOLIN_RS07600 tryptophan synthase subunit beta
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase 0.54 EX28DRAFT_0933 tryptophan synthase, beta subunit
Escherichia coli ECRC101 0.36 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 MCAODC_15595 trpB tryptophan synthase subunit beta
Escherichia coli ECRC62 0.36 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 BNILDI_18475 trpB tryptophan synthase subunit beta
Enterobacter sp. TBS_079 0.36 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.54 MPMX20_02513 Tryptophan synthase beta chain
Escherichia coli ECOR27 0.36 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 NOLOHH_20330 trpB tryptophan synthase subunit beta
Escherichia coli ECRC102 0.36 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 NIAGMN_26840 trpB tryptophan synthase subunit beta
Escherichia coli BL21 0.36 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+) 0.53 ECD_01235 tryptophan synthase, beta subunit
Escherichia coli ECRC100 0.36 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 OKFHMN_02670 trpB tryptophan synthase subunit beta
Escherichia coli BW25113 0.36 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI) 0.53 b1261 trpB tryptophan synthase subunit beta (NCBI)
Escherichia fergusonii Becca 0.36 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.53 EFB2_02665 Tryptophan synthase beta chain
Escherichia coli ECOR38 0.36 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 HEPCGN_25520 trpB tryptophan synthase subunit beta
Klebsiella michiganensis M5al 0.36 BWI76_RS27210 glycerol-3-phosphate dehydrogenase 0.54 BWI76_RS11845 tryptophan synthase subunit beta
Dickeya dianthicola 67-19 0.35 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 HGI48_RS10465 tryptophan synthase subunit beta low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 DZA65_RS10945 tryptophan synthase subunit beta
Mycobacterium tuberculosis H37Rv 0.35 Rv0564c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase) 0.62 Rv1612 Tryptophan synthase, beta subunit TrpB
Caulobacter crescentus NA1000 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.61 CCNA_03658 tryptophan synthase beta chain
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.61 CCNA_03658 tryptophan synthase beta chain
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.53 GFF2725 Tryptophan synthase beta chain (EC 4.2.1.20)
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.54 CSW01_05930 tryptophan synthase subunit beta
Pantoea sp. MT58 0.35 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 IAI47_09170 tryptophan synthase subunit beta
Erwinia tracheiphila SCR3 0.34 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 LU632_RS12770 trpB tryptophan synthase subunit beta low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.62 A4249_RS11330 tryptophan synthase subunit beta
Acinetobacter radioresistens SK82 0.32 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.72 MPMX26_02617 Tryptophan synthase beta chain
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.66 Psyr_0034 tryptophan synthase, beta chain
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.66 Psyr_0034 tryptophan synthase, beta chain low > 86
Pseudomonas stutzeri RCH2 0.31 Psest_2471 Glycerol-3-phosphate dehydrogenase 0.70 Psest_0063 tryptophan synthase, beta subunit
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.68 PfGW456L13_566 Tryptophan synthase beta chain (EC 4.2.1.20) 0.83 34
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_01735 glycerol-3-phosphate dehydrogenase 0.68 AO353_10710 tryptophan synthase subunit beta
Pseudomonas fluorescens SBW25 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.69 PFLU_RS00180 tryptophan synthase subunit beta low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.69 PFLU_RS00180 tryptophan synthase subunit beta 0.35 19
Pseudomonas simiae WCS417 0.30 PS417_09000 glycerol-3-phosphate dehydrogenase 0.68 PS417_00185 tryptophan synthase subunit beta
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_19795 glycerol-3-phosphate dehydrogenase 0.68 AO356_10915 tryptophan synthase subunit beta 0.90 11
Pseudomonas sp. RS175 0.30 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.68 PFR28_04715 Tryptophan synthase beta chain
Marinobacter adhaerens HP15 0.30 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.67 HP15_1827 tryptophan synthase, beta subunit
Pseudomonas fluorescens FW300-N2E2 0.30 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.68 Pf6N2E2_4048 Tryptophan synthase beta chain (EC 4.2.1.20)
Agrobacterium fabrum C58 0.29 Atu2650 glycerol-3-phosphate dehydrogenase 0.64 Atu0018 tryptophan synthase beta subunit
Dinoroseobacter shibae DFL-12 0.29 Dshi_3830 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq) 0.65 Dshi_1031 tryptophan synthase, beta subunit (RefSeq)
Pseudomonas putida KT2440 0.29 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.66 PP_0083 tryptophan synthase beta chain
Rhizobium sp. OAE497 0.29 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.64 ABIE40_RS19335 tryptophan synthase subunit beta
Phaeobacter inhibens DSM 17395 0.29 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA 0.66 PGA1_c04870 tryptophan synthase beta chain
Pseudomonas sp. S08-1 0.28 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.70 OH686_12425 tryptophan synthase, beta subunit 0.77 11
Sinorhizobium meliloti 1021 0.28 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.64 SMc02766 tryptophan synthase subunit beta 0.53 98
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3518 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.69 Pf1N1B4_1831 Tryptophan synthase beta chain (EC 4.2.1.20) 0.67 17
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.61 Synpcc7942_2143 trpB tryptophan synthase subunit beta
Bosea sp. OAE506 0.27 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.67 ABIE41_RS04270 tryptophan synthase subunit beta
Rhodopseudomonas palustris CGA009 0.26 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.67 TX73_000360 tryptophan synthase subunit beta
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_0322 Glycerol-3-phosphate dehydrogenase 0.54 Echvi_2510 tryptophan synthase, beta subunit
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 HMPREF1181_RS15320 tryptophan synthase subunit beta
Bacteroides ovatus ATCC 8483 0.19 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein 0.50 BACOVA_03779 tryptophan synthase, beta subunit
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_05630 glycerol-3-phosphate dehydrogenase 0.55 CA264_05080 tryptophan synthase subunit beta low > 74
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file) 0.51 BT0533 tryptophan synthase beta chain (NCBI ptt file)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.57 ABZR88_RS10665 tryptophan synthase subunit beta
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS16375 glycerol-3-phosphate dehydrogenase 0.56 CA265_RS05020 tryptophan synthase subunit beta
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase 0.52 HMPREF1078_RS00150 tryptophan synthase subunit beta
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.51 ABI39_RS21045 tryptophan synthase subunit beta
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.51 HMPREF1058_RS07170 tryptophan synthase subunit beta

Not shown: 2 genomes with orthologs for BPHYT_RS02610 only; 4 genomes with orthologs for BPHYT_RS33875 only