Conservation of cofitness between BPHYT_RS02610 and BPHYT_RS13705 in Burkholderia phytofirmans PsJN

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 1.0 BPHYT_RS13705 chorismate synthase 0.78 14
Paraburkholderia bryophila 376MFSha3.1 0.95 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.97 H281DRAFT_04489 chorismate synthase — —
Paraburkholderia graminis OAS925 0.92 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.97 ABIE53_002916 chorismate synthase — —
Paraburkholderia sabiae LMG 24235 0.85 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.95 QEN71_RS05215 chorismate synthase 0.77 34
Ralstonia solanacearum GMI1000 0.62 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.84 RS_RS07885 chorismate synthase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase 0.84 RALBFv3_RS01850 chorismate synthase — —
Ralstonia solanacearum UW163 0.60 UW163_RS02660 glycerol-3-phosphate dehydrogenase 0.84 UW163_RS15160 chorismate synthase — —
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.87 ABZR87_RS13790 chorismate synthase 0.64 36
Ralstonia solanacearum PSI07 0.58 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase 0.84 RPSI07_RS15640 chorismate synthase — —
Castellaniella sp019104865 MT123 0.56 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.76 ABCV34_RS04300 chorismate synthase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS00795 glycerol-3-phosphate dehydrogenase 0.80 HSERO_RS16525 chorismate synthase — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS01845 glycerol-3-phosphate dehydrogenase 0.86 RR42_RS06485 chorismate synthase 0.83 6
Variovorax sp. SCN45 0.50 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.70 GFF2627 Chorismate synthase (EC 4.2.3.5) low > 127
Variovorax sp. OAS795 0.49 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 ABID97_RS19805 chorismate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.77 GFF5239 Chorismate synthase (EC 4.2.3.5) low > 90
Acidovorax sp. GW101-3H11 0.46 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.76 Ac3H11_2925 Chorismate synthase (EC 4.2.3.5) 0.75 23
Dechlorosoma suillum PS 0.43 Dsui_1277 glycerol-3-phosphate dehydrogenase 0.77 Dsui_3204 chorismate synthase — —
Lysobacter sp. OAE881 0.42 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.65 ABIE51_RS08220 chorismate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) 0.47 DVU0894 aroC chorismate synthase (TIGR) — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.67 Xcc-8004.1955.1 Chorismate synthase (EC 4.2.3.5) low > 74
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase 0.47 B158DRAFT_2433 chorismate synthase (EC 4.2.3.5) — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase 0.67 OKGIIK_04805 aroC chorismate synthase — —
Shewanella loihica PV-4 0.39 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.63 Shew_2416 chorismate synthase (RefSeq) — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.66 LRK55_RS01505 chorismate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.66 LRK54_RS01725 chorismate synthase — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 ABZR86_RS08040 chorismate synthase — —
Shewanella sp. ANA-3 0.38 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.62 Shewana3_1469 chorismate synthase (RefSeq) — —
Shewanella amazonensis SB2B 0.38 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.65 Sama_2159 chorismate synthase (RefSeq) — —
Alteromonas macleodii MIT1002 0.38 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.66 MIT1002_01229 Chorismate synthase — —
Rhodospirillum rubrum S1H 0.37 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) 0.56 Rru_A2623 Chorismate synthase (NCBI) — —
Azospirillum sp. SherDot2 0.37 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.56 MPMX19_01810 Chorismate synthase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase 0.48 Ga0059261_2470 chorismate synthase (EC 4.2.3.5) — —
Azospirillum brasilense Sp245 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase 0.58 AZOBR_RS10730 chorismate synthase — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.63 HER17_RS06935 chorismate synthase low > 75
Serratia liquefaciens MT49 0.36 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.63 IAI46_18025 chorismate synthase low > 86
Rahnella sp. WP5 0.36 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.63 EX31_RS19685 chorismate synthase — —
Escherichia fergusonii Becca 0.36 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.62 EFB2_01529 Chorismate synthase — —
Enterobacter sp. TBS_079 0.36 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.61 MPMX20_03264 Chorismate synthase — —
Escherichia coli ECOR27 0.36 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 NOLOHH_14250 aroC chorismate synthase — —
Escherichia coli ECRC101 0.36 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 MCAODC_13655 aroC chorismate synthase — —
Escherichia coli BW25113 0.36 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI) 0.62 b2329 aroC chorismate synthase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.62 OHPLBJKB_01376 Chorismate synthase — —
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase 0.61 EX28DRAFT_0275 chorismate synthase (EC 4.2.3.5) — —
Escherichia coli ECRC100 0.36 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 OKFHMN_22615 aroC chorismate synthase — —
Escherichia coli ECRC62 0.36 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 BNILDI_13170 aroC chorismate synthase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 ECOLIN_RS13490 chorismate synthase — —
Fusobacterium nucleatum SB010 0.36 HUW76_05650 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.31 HUW76_05440 chorismate synthase — —
Escherichia coli BL21 0.36 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+) 0.62 ECD_02254 chorismate synthase — —
Escherichia coli ECRC102 0.36 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 NIAGMN_20390 aroC chorismate synthase — —
Escherichia coli ECRC99 0.36 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 KEDOAH_05580 aroC chorismate synthase — —
Dickeya dadantii 3937 0.36 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 DDA3937_RS14580 chorismate synthase — —
Escherichia coli ECOR38 0.36 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 HEPCGN_21820 aroC chorismate synthase — —
Escherichia coli ECRC98 0.36 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.62 JDDGAC_26575 aroC chorismate synthase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS27210 glycerol-3-phosphate dehydrogenase 0.61 BWI76_RS20435 chorismate synthase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.63 HGI48_RS14530 chorismate synthase — —
Mycobacterium tuberculosis H37Rv 0.35 Rv0564c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase) 0.25 Rv2540c Probable chorismate synthase AroF (5-enolpyruvylshikimate-3-phosphate phospholyase) — —
Dickeya dianthicola ME23 0.35 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.63 DZA65_RS15465 chorismate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.63 GFF1950 Chorismate synthase (EC 4.2.3.5) — —
Caulobacter crescentus NA1000 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.47 CCNA_03256 chorismate synthase — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.47 CCNA_03256 chorismate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.64 CSW01_10560 chorismate synthase — —
Pantoea sp. MT58 0.35 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.61 IAI47_06150 chorismate synthase — —
Erwinia tracheiphila SCR3 0.34 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.65 LU632_RS07775 aroC chorismate synthase 0.69 19
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.50 A4249_RS08790 chorismate synthase — —
Acinetobacter radioresistens SK82 0.32 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.58 MPMX26_01340 Chorismate synthase — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.65 Psyr_1853 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.65 Psyr_1853 chorismate synthase — —
Pseudomonas stutzeri RCH2 0.31 Psest_2471 Glycerol-3-phosphate dehydrogenase 0.65 Psest_1903 chorismate synthase — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.65 PfGW456L13_4165 Chorismate synthase (EC 4.2.3.5) 0.74 54
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_01735 glycerol-3-phosphate dehydrogenase 0.65 AO353_02250 chorismate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.64 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.64 PFLU_RS21280 chorismate synthase — —
Pseudomonas sp. RS175 0.30 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.64 PFR28_03126 Chorismate synthase — —
Pseudomonas simiae WCS417 0.30 PS417_09000 glycerol-3-phosphate dehydrogenase 0.64 PS417_19315 chorismate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_19795 glycerol-3-phosphate dehydrogenase 0.64 AO356_19540 chorismate synthase — —
Marinobacter adhaerens HP15 0.30 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.71 HP15_1838 chorismate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.30 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.64 Pf6N2E2_5822 Chorismate synthase (EC 4.2.3.5) — —
Agrobacterium fabrum C58 0.29 Atu2650 glycerol-3-phosphate dehydrogenase 0.48 Atu0754 chorismate synthase — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_3830 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq) 0.54 Dshi_3275 Chorismate synthase (RefSeq) — —
Rhizobium sp. OAE497 0.29 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.50 ABIE40_RS03980 chorismate synthase — —
Pseudomonas putida KT2440 0.29 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.66 PP_1830 Chorismate synthase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA 0.53 PGA1_c34060 chorismate synthase AroC — —
Pseudomonas sp. S08-1 0.28 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.66 OH686_00675 chorismate synthase — —
Sinorhizobium meliloti 1021 0.28 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.50 SMc00007 chorismate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3518 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.65 Pf1N1B4_3780 Chorismate synthase (EC 4.2.3.5) — —
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.45 Synpcc7942_0212 aroC chorismate synthase — —
Bosea sp. OAE506 0.27 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.53 ABIE41_RS10190 chorismate synthase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.54 TX73_006170 chorismate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_0322 Glycerol-3-phosphate dehydrogenase 0.47 Echvi_1518 chorismate synthase — —
Bifidobacterium breve UCC2003 0.21 BBR_RS12080 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.23 BBR_RS15080 chorismate synthase — —
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.39 HMPREF1181_RS08365 chorismate synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file) 0.38 BT2084 chorismate synthase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.19 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein 0.38 BACOVA_03296 chorismate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_05630 glycerol-3-phosphate dehydrogenase 0.43 CA264_19835 chorismate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.43 ABZR88_RS06995 chorismate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS16375 glycerol-3-phosphate dehydrogenase 0.45 CA265_RS11645 chorismate synthase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase 0.43 HMPREF1078_RS16710 chorismate synthase — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.39 ABI39_RS12645 chorismate synthase — —
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.39 HMPREF1058_RS16730 chorismate synthase — —

Not shown: 1 genomes with orthologs for BPHYT_RS02610 only; 4 genomes with orthologs for BPHYT_RS13705 only