Conservation of cofitness between Atu2650 and Atu2747 in Agrobacterium fabrum C58

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2650 glycerol-3-phosphate dehydrogenase 1.0 Atu2747 hypothetical protein 0.85 19
Rhizobium sp. OAE497 0.72 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.76 ABIE40_RS19180 YggS family pyridoxal phosphate-dependent enzyme
Sinorhizobium meliloti 1021 0.64 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.77 SMc02812 hypothetical protein low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.53 A4249_RS13760 YggS family pyridoxal phosphate-dependent enzyme
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase 0.32 B158DRAFT_0196 pyridoxal phosphate enzyme, YggS family
Serratia liquefaciens MT49 0.38 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.25 IAI46_21410 YggS family pyridoxal phosphate-dependent enzyme low > 86
Pantoea sp. MT58 0.38 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.29 IAI47_03595 YggS family pyridoxal phosphate-dependent enzyme
Rhodospirillum rubrum S1H 0.38 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) 0.57 Rru_A3634 Protein of unknown function UPF0001 (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.38 Dshi_3414 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein (RefSeq) 0.53 Dshi_0042 alanine racemase domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.38 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA 0.53 PGA1_c33360 putative alanine racemase low > 62
Erwinia tracheiphila SCR3 0.38 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.28 LU632_RS05460 YggS family pyridoxal phosphate-dependent enzyme low > 74
Rahnella sp. WP5 0.38 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.29 EX31_RS02685 YggS family pyridoxal phosphate-dependent enzyme low > 89
Dickeya dadantii 3937 0.37 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.33 DDA3937_RS17300 YggS family pyridoxal phosphate-dependent enzyme
Azospirillum sp. SherDot2 0.37 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.60 MPMX19_00050 Pyridoxal phosphate homeostasis protein low > 112
Dickeya dianthicola ME23 0.37 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.40 DZA65_RS03335 YggS family pyridoxal phosphate-dependent enzyme
Dickeya dianthicola 67-19 0.37 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.31 HGI48_RS17345 YggS family pyridoxal phosphate-dependent enzyme low > 71
Pectobacterium carotovorum WPP14 0.37 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 HER17_RS03810 YggS family pyridoxal phosphate-dependent enzyme low > 75
Caulobacter crescentus NA1000 0.37 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.51 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.51 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III
Escherichia coli ECRC98 0.36 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 JDDGAC_22885 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECOR27 0.36 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 NOLOHH_11125 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECRC101 0.36 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 OKFHMN_19255 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECRC101 0.36 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 MCAODC_09775 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECOR38 0.36 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 HEPCGN_18560 yggS pyridoxal phosphate homeostasis protein
Escherichia fergusonii Becca 0.36 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.30 EFB2_00951 Pyridoxal phosphate homeostasis protein
Escherichia coli ECRC102 0.36 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 NIAGMN_17020 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECRC62 0.36 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 BNILDI_09705 yggS pyridoxal phosphate homeostasis protein
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.30 OHPLBJKB_00765 Pyridoxal phosphate homeostasis protein
Escherichia coli BL21 0.36 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+) 0.30 ECD_02781 UPF0001 family protein, PLP-binding
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.30 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC
Escherichia coli Nissle 1917 0.36 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 ECOLIN_RS16415 pyridoxal phosphate homeostasis protein
Escherichia coli ECRC99 0.36 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.30 KEDOAH_08885 yggS pyridoxal phosphate homeostasis protein
Escherichia coli BW25113 0.36 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI) 0.30 b2951 yggS predicted enzyme (NCBI)
Klebsiella michiganensis M5al 0.36 BWI76_RS27210 glycerol-3-phosphate dehydrogenase 0.31 BWI76_RS24100 YggS family pyridoxal phosphate enzyme
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase 0.32 EX28DRAFT_2989 pyridoxal phosphate enzyme, YggS family
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.34 CSW01_02455 YggS family pyridoxal phosphate enzyme
Enterobacter sp. TBS_079 0.36 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.30 MPMX20_03809 Pyridoxal phosphate homeostasis protein
Azospirillum brasilense Sp245 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase 0.62 AZOBR_RS01870 alanine racemase
Shewanella loihica PV-4 0.36 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.37 Shew_1137 alanine racemase domain-containing protein (RefSeq)
Shewanella amazonensis SB2B 0.36 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.33 Sama_2477 hypothetical protein (RefSeq)
Lysobacter sp. OAE881 0.35 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.31 ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme
Alteromonas macleodii MIT1002 0.35 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.33 MIT1002_03061 pyridoxal phosphate enzyme, YggS family low > 70
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase 0.29 OKGIIK_09885 Pyridoxal phosphate homeostasis protein
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.25 Xcc-8004.1711.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 74
Shewanella sp. ANA-3 0.35 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.34 Shewana3_1194 hypothetical protein (RefSeq)
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase 0.49 Ga0059261_2216 pyridoxal phosphate enzyme, YggS family low > 68
Shewanella oneidensis MR-1 0.35 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file) 0.32 SO3352 conserved hypothetical protein TIGR00044 (NCBI ptt file)
Bosea sp. OAE506 0.35 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.58 ABIE41_RS04720 YggS family pyridoxal phosphate-dependent enzyme low > 77
Fusobacterium nucleatum SB010 0.34 HUW76_05650 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.22 HUW76_07280 YggS family pyridoxal phosphate-dependent enzyme
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.29 ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme
Rhodopseudomonas palustris CGA009 0.34 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.59 TX73_001485 YggS family pyridoxal phosphate-dependent enzyme 0.45 73
Rhodanobacter denitrificans MT42 0.33 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.32 LRK55_RS02655 YggS family pyridoxal phosphate-dependent enzyme
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) 0.30 DVU0051 conserved hypothetical protein TIGR00044 (TIGR) low > 55
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.32 LRK54_RS02905 YggS family pyridoxal phosphate-dependent enzyme
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.34 H281DRAFT_04680 hypothetical protein low > 103
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS00795 glycerol-3-phosphate dehydrogenase 0.35 HSERO_RS18995 hypothetical protein low > 78
Castellaniella sp019104865 MT123 0.31 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.33 ABCV34_RS02955 YggS family pyridoxal phosphate-dependent enzyme 0.32 30
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.32 GFF2722 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 90
Marinobacter adhaerens HP15 0.31 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.26 HP15_288 alanine racemase domain protein
Pseudomonas stutzeri RCH2 0.30 Psest_2471 Glycerol-3-phosphate dehydrogenase 0.29 Psest_0284 pyridoxal phosphate enzyme, YggS family
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.29 Ac3H11_4474 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 79
Ralstonia solanacearum GMI1000 0.30 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.53 RS_RS20395 YggS family pyridoxal phosphate-dependent enzyme
Paraburkholderia graminis OAS925 0.29 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.34 ABIE53_000841 pyridoxal phosphate enzyme (YggS family) low > 113
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase 0.51 RALBFv3_RS20285 YggS family pyridoxal phosphate-dependent enzyme low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS02660 glycerol-3-phosphate dehydrogenase 0.51 UW163_RS18890 YggS family pyridoxal phosphate-dependent enzyme
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_19795 glycerol-3-phosphate dehydrogenase 0.29 AO356_13425 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.27 Pf6N2E2_4601 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC
Variovorax sp. OAS795 0.29 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.32 ABID97_RS00250 YggS family pyridoxal phosphate-dependent enzyme
Variovorax sp. SCN45 0.29 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.31 GFF3744 Pyridoxal phosphate-containing protein YggS
Pseudomonas sp. RS175 0.29 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.26 PFR28_04242 Pyridoxal phosphate homeostasis protein
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_01735 glycerol-3-phosphate dehydrogenase 0.31 AO353_10505 hypothetical protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.31 Psyr_0477 Protein of unknown function UPF0001 low > 86
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.27 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme low > 109
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.31 Psyr_0477 Protein of unknown function UPF0001
Pseudomonas fluorescens SBW25 0.28 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.27 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme low > 109
Mycobacterium tuberculosis H37Rv 0.28 Rv2982c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA2 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) 0.21 Rv2148c Conserved protein low > 58
Pseudomonas simiae WCS417 0.28 PS417_09000 glycerol-3-phosphate dehydrogenase 0.28 PS417_26725 hypothetical protein
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.33 ABZR87_RS01225 YggS family pyridoxal phosphate-dependent enzyme low > 80
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.27 PfGW456L13_1011 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 87
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.34 BPHYT_RS03495 hypothetical protein 0.58 69
Ralstonia solanacearum PSI07 0.28 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase 0.51 RPSI07_RS02580 YggS family pyridoxal phosphate-dependent enzyme low > 81
Pseudomonas putida KT2440 0.28 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.28 PP_5094 putative enzyme with PLP binding domain
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.35 QEN71_RS26595 YggS family pyridoxal phosphate-dependent enzyme low > 153
Dechlorosoma suillum PS 0.27 Dsui_1277 glycerol-3-phosphate dehydrogenase 0.30 Dsui_0603 pyridoxal phosphate enzyme, YggS family
Acinetobacter radioresistens SK82 0.26 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.27 MPMX26_02404 Pyridoxal phosphate homeostasis protein
Pseudomonas sp. S08-1 0.26 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.30 OH686_10975 Pyridoxal phosphate-containing protein YggS low > 80
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS01845 glycerol-3-phosphate dehydrogenase 0.28 RR42_RS17355 hypothetical protein low > 128
Bifidobacterium breve UCC2003 0.25 BBR_RS12080 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.21 BBR_RS11570 YggS family pyridoxal phosphate-dependent enzyme
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.26 Synpcc7942_2060 ylmE hypothetical protein
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_0322 Glycerol-3-phosphate dehydrogenase 0.24 Echvi_2233 pyridoxal phosphate enzyme, YggS family
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.23 HMPREF1181_RS10865 YggS family pyridoxal phosphate-dependent enzyme
Bacteroides ovatus ATCC 8483 0.19 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein 0.24 BACOVA_00593 pyridoxal phosphate enzyme, YggS family
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file) 0.25 BT1332 conserved hypothetical protein (NCBI ptt file)
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_05630 glycerol-3-phosphate dehydrogenase 0.23 CA264_06410 YggS family pyridoxal phosphate enzyme low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.25 ABZR88_RS11740 YggS family pyridoxal phosphate-dependent enzyme
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS16375 glycerol-3-phosphate dehydrogenase 0.23 CA265_RS06285 YggS family pyridoxal phosphate enzyme
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.21 HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.21 ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase 0.25 HMPREF1078_RS15965 YggS family pyridoxal phosphate-dependent enzyme

Not shown: 1 genomes with orthologs for Atu2650 only; 2 genomes with orthologs for Atu2747 only