Conservation of cofitness between Atu2747 and Atu2650 in Agrobacterium fabrum C58

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2747 hypothetical protein 1.0 Atu2650 glycerol-3-phosphate dehydrogenase 0.85 20
Sinorhizobium meliloti 1021 0.77 SMc02812 hypothetical protein 0.64 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.46 57
Rhizobium sp. OAE497 0.76 ABIE40_RS19180 YggS family pyridoxal phosphate-dependent enzyme 0.72 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Azospirillum brasilense Sp245 0.62 AZOBR_RS01870 alanine racemase 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase
Azospirillum sp. SherDot2 0.60 MPMX19_00050 Pyridoxal phosphate homeostasis protein 0.37 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 112
Rhodopseudomonas palustris CGA009 0.59 TX73_001485 YggS family pyridoxal phosphate-dependent enzyme 0.34 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.45 47
Bosea sp. OAE506 0.58 ABIE41_RS04720 YggS family pyridoxal phosphate-dependent enzyme 0.35 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 77
Rhodospirillum rubrum S1H 0.57 Rru_A3634 Protein of unknown function UPF0001 (NCBI) 0.38 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.53 Dshi_0042 alanine racemase domain protein (RefSeq) 0.38 Dshi_3414 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS13760 YggS family pyridoxal phosphate-dependent enzyme 0.40 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Ralstonia solanacearum GMI1000 0.53 RS_RS20395 YggS family pyridoxal phosphate-dependent enzyme 0.30 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+))
Phaeobacter inhibens DSM 17395 0.53 PGA1_c33360 putative alanine racemase 0.38 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA low > 62
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.37 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Caulobacter crescentus NA1000 0.51 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.37 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Ralstonia solanacearum PSI07 0.51 RPSI07_RS02580 YggS family pyridoxal phosphate-dependent enzyme 0.28 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase low > 81
Ralstonia solanacearum UW163 0.51 UW163_RS18890 YggS family pyridoxal phosphate-dependent enzyme 0.29 UW163_RS02660 glycerol-3-phosphate dehydrogenase
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS20285 YggS family pyridoxal phosphate-dependent enzyme 0.29 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase low > 76
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_2216 pyridoxal phosphate enzyme, YggS family 0.35 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase low > 68
Dickeya dianthicola ME23 0.40 DZA65_RS03335 YggS family pyridoxal phosphate-dependent enzyme 0.37 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Shewanella loihica PV-4 0.37 Shew_1137 alanine racemase domain-containing protein (RefSeq) 0.36 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS18995 hypothetical protein 0.32 HSERO_RS00795 glycerol-3-phosphate dehydrogenase low > 78
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26595 YggS family pyridoxal phosphate-dependent enzyme 0.28 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 153
Paraburkholderia graminis OAS925 0.34 ABIE53_000841 pyridoxal phosphate enzyme (YggS family) 0.29 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 113
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS03495 hypothetical protein 0.28 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.58 57
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04680 hypothetical protein 0.32 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 103
Shewanella sp. ANA-3 0.34 Shewana3_1194 hypothetical protein (RefSeq) 0.35 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_02455 YggS family pyridoxal phosphate enzyme 0.36 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+))
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS01225 YggS family pyridoxal phosphate-dependent enzyme 0.28 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 80
Dickeya dadantii 3937 0.33 DDA3937_RS17300 YggS family pyridoxal phosphate-dependent enzyme 0.37 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Alteromonas macleodii MIT1002 0.33 MIT1002_03061 pyridoxal phosphate enzyme, YggS family 0.35 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 70
Shewanella amazonensis SB2B 0.33 Sama_2477 hypothetical protein (RefSeq) 0.36 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq)
Castellaniella sp019104865 MT123 0.33 ABCV34_RS02955 YggS family pyridoxal phosphate-dependent enzyme 0.31 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 48
Enterobacter asburiae PDN3 0.32 EX28DRAFT_2989 pyridoxal phosphate enzyme, YggS family 0.36 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase
Variovorax sp. OAS795 0.32 ABID97_RS00250 YggS family pyridoxal phosphate-dependent enzyme 0.29 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS02905 YggS family pyridoxal phosphate-dependent enzyme 0.33 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Shewanella oneidensis MR-1 0.32 SO3352 conserved hypothetical protein TIGR00044 (NCBI ptt file) 0.35 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2722 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.31 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 90
Rhodanobacter denitrificans MT42 0.32 LRK55_RS02655 YggS family pyridoxal phosphate-dependent enzyme 0.33 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0196 pyridoxal phosphate enzyme, YggS family 0.39 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0477 Protein of unknown function UPF0001 0.28 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 86
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0477 Protein of unknown function UPF0001 0.28 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+)
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_10505 hypothetical protein 0.29 AO353_01735 glycerol-3-phosphate dehydrogenase
Lysobacter sp. OAE881 0.31 ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme 0.35 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Variovorax sp. SCN45 0.31 GFF3744 Pyridoxal phosphate-containing protein YggS 0.29 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)
Klebsiella michiganensis M5al 0.31 BWI76_RS24100 YggS family pyridoxal phosphate enzyme 0.36 BWI76_RS27210 glycerol-3-phosphate dehydrogenase
Dickeya dianthicola 67-19 0.31 HGI48_RS17345 YggS family pyridoxal phosphate-dependent enzyme 0.37 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 71
Enterobacter sp. TBS_079 0.30 MPMX20_03809 Pyridoxal phosphate homeostasis protein 0.36 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Pectobacterium carotovorum WPP14 0.30 HER17_RS03810 YggS family pyridoxal phosphate-dependent enzyme 0.37 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 75
Pseudomonas sp. S08-1 0.30 OH686_10975 Pyridoxal phosphate-containing protein YggS 0.26 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 80
Escherichia fergusonii Becca 0.30 EFB2_00951 Pyridoxal phosphate homeostasis protein 0.36 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Escherichia coli BL21 0.30 ECD_02781 UPF0001 family protein, PLP-binding 0.36 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+)
Escherichia coli ECRC98 0.30 JDDGAC_22885 yggS pyridoxal phosphate homeostasis protein 0.36 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECOR38 0.30 HEPCGN_18560 yggS pyridoxal phosphate homeostasis protein 0.36 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC102 0.30 NIAGMN_17020 yggS pyridoxal phosphate homeostasis protein 0.36 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli Nissle 1917 0.30 ECOLIN_RS16415 pyridoxal phosphate homeostasis protein 0.36 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00765 Pyridoxal phosphate homeostasis protein 0.36 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0051 conserved hypothetical protein TIGR00044 (TIGR) 0.33 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) low > 55
Escherichia coli BW25113 0.30 b2951 yggS predicted enzyme (NCBI) 0.36 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI)
Escherichia coli ECRC101 0.30 OKFHMN_19255 yggS pyridoxal phosphate homeostasis protein 0.36 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC101 0.30 MCAODC_09775 yggS pyridoxal phosphate homeostasis protein 0.36 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECOR27 0.30 NOLOHH_11125 yggS pyridoxal phosphate homeostasis protein 0.36 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC62 0.30 BNILDI_09705 yggS pyridoxal phosphate homeostasis protein 0.36 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Escherichia coli ECRC99 0.30 KEDOAH_08885 yggS pyridoxal phosphate homeostasis protein 0.36 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Dechlorosoma suillum PS 0.30 Dsui_0603 pyridoxal phosphate enzyme, YggS family 0.27 Dsui_1277 glycerol-3-phosphate dehydrogenase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.36 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme 0.34 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_09885 Pyridoxal phosphate homeostasis protein 0.35 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase
Pseudomonas stutzeri RCH2 0.29 Psest_0284 pyridoxal phosphate enzyme, YggS family 0.30 Psest_2471 Glycerol-3-phosphate dehydrogenase
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4474 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.30 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 79
Rahnella sp. WP5 0.29 EX31_RS02685 YggS family pyridoxal phosphate-dependent enzyme 0.38 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 89
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_13425 hypothetical protein 0.29 AO356_19795 glycerol-3-phosphate dehydrogenase low > 104
Pantoea sp. MT58 0.29 IAI47_03595 YggS family pyridoxal phosphate-dependent enzyme 0.38 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Pseudomonas putida KT2440 0.28 PP_5094 putative enzyme with PLP binding domain 0.28 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Pseudomonas simiae WCS417 0.28 PS417_26725 hypothetical protein 0.28 PS417_09000 glycerol-3-phosphate dehydrogenase
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS17355 hypothetical protein 0.26 RR42_RS01845 glycerol-3-phosphate dehydrogenase low > 128
Erwinia tracheiphila SCR3 0.28 LU632_RS05460 YggS family pyridoxal phosphate-dependent enzyme 0.38 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 74
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1011 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.28 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.37 16
Acinetobacter radioresistens SK82 0.27 MPMX26_02404 Pyridoxal phosphate homeostasis protein 0.26 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.28 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.28 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4601 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.29 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)
Marinobacter adhaerens HP15 0.26 HP15_288 alanine racemase domain protein 0.31 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Pseudomonas sp. RS175 0.26 PFR28_04242 Pyridoxal phosphate homeostasis protein 0.29 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2060 ylmE hypothetical protein 0.25 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+)
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS15965 YggS family pyridoxal phosphate-dependent enzyme 0.17 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS11740 YggS family pyridoxal phosphate-dependent enzyme 0.18 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Serratia liquefaciens MT49 0.25 IAI46_21410 YggS family pyridoxal phosphate-dependent enzyme 0.38 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 86
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1332 conserved hypothetical protein (NCBI ptt file) 0.19 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file)
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.1711.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.35 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_2233 pyridoxal phosphate enzyme, YggS family 0.23 Echvi_0322 Glycerol-3-phosphate dehydrogenase
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00593 pyridoxal phosphate enzyme, YggS family 0.19 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS10865 YggS family pyridoxal phosphate-dependent enzyme 0.19 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS06285 YggS family pyridoxal phosphate enzyme 0.17 CA265_RS16375 glycerol-3-phosphate dehydrogenase
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_06410 YggS family pyridoxal phosphate enzyme 0.18 CA264_05630 glycerol-3-phosphate dehydrogenase low > 74
Fusobacterium nucleatum SB010 0.22 HUW76_07280 YggS family pyridoxal phosphate-dependent enzyme 0.34 HUW76_05650 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Mycobacterium tuberculosis H37Rv 0.21 Rv2148c Conserved protein 0.28 Rv2982c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA2 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) low > 58
Bifidobacterium breve UCC2003 0.21 BBR_RS11570 YggS family pyridoxal phosphate-dependent enzyme 0.25 BBR_RS12080 NAD(P)-dependent glycerol-3-phosphate dehydrogenase
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme 0.17 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme 0.17 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

Not shown: 2 genomes with orthologs for Atu2747 only; 1 genomes with orthologs for Atu2650 only