Conservation of cofitness between Sama_0337 and Sama_3169 in Shewanella amazonensis SB2B

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 1.0 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.98 5
Shewanella sp. ANA-3 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.92 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.97 4
Shewanella loihica PV-4 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.91 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.99 5
Shewanella oneidensis MR-1 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.92 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.97 16
Escherichia fergusonii Becca 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.76 EFB2_04672 5,10-methylenetetrahydrofolate reductase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.76 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase low > 73
Escherichia coli ECRC62 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 BNILDI_05725 metF methylenetetrahydrofolate reductase 0.99 5
Escherichia coli ECOR38 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 HEPCGN_12310 metF methylenetetrahydrofolate reductase 0.96 38
Escherichia coli BW25113 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.76 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.96 8
Escherichia coli Nissle 1917 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.76 ECOLIN_RS22760 methylenetetrahydrofolate reductase 0.96 5
Escherichia coli ECOR27 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 NOLOHH_05810 metF methylenetetrahydrofolate reductase 0.98 4
Escherichia coli BL21 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit 0.76 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.96 10
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 NIAGMN_11420 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 MCAODC_04165 metF methylenetetrahydrofolate reductase 0.98 4
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 OKFHMN_13665 metF methylenetetrahydrofolate reductase 0.99 4
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 KEDOAH_14495 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.76 JDDGAC_17290 metF methylenetetrahydrofolate reductase 0.98 4
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.76 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.76 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.91 19
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.75 IAI47_00890 methylenetetrahydrofolate reductase low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.75 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.73 64
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.76 EX31_RS14205 methylenetetrahydrofolate reductase 0.92 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.77 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.76 DDA3937_RS00960 methylenetetrahydrofolate reductase low > 74
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.75 IAI46_24530 methylenetetrahydrofolate reductase 0.84 2
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.77 CSW01_13560 methylenetetrahydrofolate reductase low > 62
Dickeya dianthicola ME23 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.76 DZA65_RS21460 methylenetetrahydrofolate reductase 0.74 32
Dickeya dianthicola 67-19 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.76 HGI48_RS20415 methylenetetrahydrofolate reductase low > 71
Pectobacterium carotovorum WPP14 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.74 HER17_RS00950 methylenetetrahydrofolate reductase low > 75
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.75 LU632_RS19630 metF methylenetetrahydrofolate reductase low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.68 MIT1002_03670 5,10-methylenetetrahydrofolate reductase low > 70
Azospirillum sp. SherDot2 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.53 MPMX19_00635 5,10-methylenetetrahydrofolate reductase 0.90 7
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.51 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI) 0.95 5
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.61 B158DRAFT_2461 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20) low > 40
Azospirillum brasilense Sp245 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.54 AZOBR_RS09540 5 10-methylenetetrahydrofolate reductase 0.72 28
Sinorhizobium meliloti 1021 0.61 SMc03823 isopropylmalate isomerase large subunit 0.35 SMc01843 5,10-methylenetetrahydrofolate reductase 0.98 4
Rhodopseudomonas palustris CGA009 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit 0.46 TX73_019175 methylenetetrahydrofolate reductase [NAD(P)H]
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.54 AMB_RS02230 methylenetetrahydrofolate reductase
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.34 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] 0.46 24
Agrobacterium fabrum C58 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.38 Atu2123 methylenetetrahydrofolate reductase 0.60 81
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.36 RR42_RS01385 5,10-methylenetetrahydrofolate reductase 0.77 21
Rhizobium sp. OAE497 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.41 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] 0.98 5
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.37 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.84 18
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.34 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 74
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.37 PP_4977 5,10-methylenetetrahydrofolate reductase 0.45 66
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.67 47
Pseudomonas sp. RS175 0.60 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.37 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.72 6
Pseudomonas stutzeri RCH2 0.59 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.36 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.89 16
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS16515 isopropylmalate isomerase 0.32 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase low > 78
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.37 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.87 26
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.36 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.94 11
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.36 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.93 14
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.36 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.78 31
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.37 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.56 44
Ralstonia solanacearum GMI1000 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.36 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] 0.51 3
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.36 PS417_26510 5,10-methylenetetrahydrofolate reductase 0.45 75
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.36 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein 0.95 2
Bosea sp. OAE506 0.59 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.51 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H]
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.37 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] 0.88 4
Ralstonia solanacearum UW163 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.36 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H]
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.36 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] 0.63 12
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.37 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.73 13
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.37 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.79 20
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33915 isopropylmalate isomerase 0.35 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase 0.56 88
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.33 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.36 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) 0.63 15
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.36 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] 0.79 6
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.35 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] 0.73 32
Acinetobacter radioresistens SK82 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.31 MPMX26_01002 5,10-methylenetetrahydrofolate reductase low > 36
Paraburkholderia graminis OAS925 0.58 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.36 ABIE53_000061 methylenetetrahydrofolate reductase (NADPH) 0.92 6
Acidovorax sp. GW101-3H11 0.58 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.33 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.90 17
Variovorax sp. OAS795 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.31 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H]
Variovorax sp. SCN45 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.31 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 127
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.34 Dsui_0640 5,10-methylenetetrahydrofolate reductase
Caulobacter crescentus NA1000 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.47 CCNA_02224 methylenetetrahydrofolate reductase 0.96 12
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.47 CCNA_02224 methylenetetrahydrofolate reductase low > 67
Dinoroseobacter shibae DFL-12 0.56 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.38 Dshi_2080 5,10-methylenetetrahydrofolate reductase (RefSeq)
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_09435 3-isopropylmalate dehydratase large subunit 0.21 CA264_16780 methylenetetrahydrofolate reductase [NAD(P)H] low > 74
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.38 PGA1_c11700 5,10-methylenetetrahydrofolate reductase MetF 0.91 7
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.54 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form low > 68
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.20 ABZR88_RS20935 methylenetetrahydrofolate reductase [NAD(P)H]
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.20 CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] 0.95 5
Bifidobacterium breve UCC2003 0.52 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.22 BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] low > 34
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.35 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.35 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.20 Echvi_3637 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.76 5
Lysobacter sp. OAE881 0.51 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.34 ABIE51_RS16490 methylenetetrahydrofolate reductase [NAD(P)H] 0.94 11
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.46 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] 0.99 21
Bacteroides ovatus ATCC 8483 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.15 BACOVA_03666 methylenetetrahydrofolate reductase (NAD(P)H) low > 94
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.35 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.97 7
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.17 HMPREF1181_RS00120 methylenetetrahydrofolate reductase [NAD(P)H] low > 56
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.18 BT3821 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) low > 81
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.35 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] low > 52
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.18 HMPREF1078_RS07860 methylenetetrahydrofolate reductase [NAD(P)H] low > 61
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.17 HMPREF1058_RS01490 methylenetetrahydrofolate reductase [NAD(P)H] low > 67
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.18 ABI39_RS15570 methylenetetrahydrofolate reductase [NAD(P)H] low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.29 DVU0997 metF 5,10-methylenetetrahydrofolate reductase (TIGR) 0.89 19
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.26 DvMF_3034 5,10-methylenetetrahydrofolate reductase (RefSeq)

Not shown: 4 genomes with orthologs for Sama_0337 only; 1 genomes with orthologs for Sama_3169 only