Conservation of cofitness between Shew_3474 and Shew_3507 in Shewanella loihica PV-4

111 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 1.0 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.61 15
Shewanella oneidensis MR-1 0.83 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.79 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.31 30
Shewanella sp. ANA-3 0.82 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.80 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella amazonensis SB2B 0.77 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.75 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01045 DNA helicase RecQ 0.63 CSW01_13680 DNA helicase RecG low > 62
Pectobacterium carotovorum WPP14 0.59 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.65 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Pantoea sp. MT58 0.58 IAI47_18360 ATP-dependent DNA helicase RecQ 0.65 IAI47_00500 ATP-dependent DNA helicase RecG 0.28 67
Klebsiella pneumoniae MKP103 0.58 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.66 KDGMDA_08135 ATP-dependent DNA helicase RecG low > 95
Dickeya dianthicola ME23 0.58 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.65 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.65 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Enterobacter sp. TBS_079 0.58 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.65 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.66 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.65 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG low > 74
Klebsiella michiganensis M5al 0.58 BWI76_RS01245 DNA helicase RecQ 0.65 BWI76_RS27440 DNA helicase RecG low > 92
Dickeya dadantii 3937 0.58 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.66 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.65 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.47 73
Escherichia coli ECRC99 0.57 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.65 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC102 0.57 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.65 NIAGMN_13305 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli ECOR27 0.57 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.65 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 76
Escherichia coli ECRC101 0.57 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.65 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.39 46
Escherichia coli ECRC98 0.57 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.65 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECOR38 0.57 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.65 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.56 11
Escherichia coli ECRC62 0.57 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.65 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC100 0.57 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.65 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Escherichia fergusonii Becca 0.57 EFB2_04815 ATP-dependent DNA helicase RecQ 0.65 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Serratia liquefaciens MT49 0.57 IAI46_00770 ATP-dependent DNA helicase RecQ 0.66 IAI46_24905 ATP-dependent DNA helicase RecG 0.61 11
Escherichia coli BW25113 0.57 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.65 b3652 recG ATP-dependent DNA helicase (NCBI) 0.25 9
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.65 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.33 6
Escherichia coli BL21 0.57 ECD_03701 ATP-dependent DNA helicase 0.65 ECD_03509 ATP-dependent DNA helicase 0.80 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF248 ATP-dependent DNA helicase RecQ 0.65 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 12
Erwinia amylovora T8 0.56 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.66 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Erwinia tracheiphila SCR3 0.56 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.65 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 73
Rahnella sp. WP5 0.56 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.65 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.65 IJEDHG_08345 recG ATP-dependent DNA helicase RecG low > 61
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Xanthobacter sp. DMC5 0.47 GFF753 ATP-dependent DNA helicase RecQ 0.29 GFF630 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.50 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Marinobacter adhaerens HP15 0.45 HP15_1718 ATP-dependent DNA helicase RecQ 0.56 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02375 recQ DNA helicase RecQ 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Pseudomonas aeruginosa PUPa3 0.44 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.56 DQ20_RS49510 recG;go_function=nucleic ATP-dependent DNA helicase RecG 0.41 2
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 96
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.56 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas aeruginosa MRSN321 0.44 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.56 DY961_RS12615 recG;go_function=nucleic ATP-dependent DNA helicase RecG low > 100
Pseudomonas aeruginosa PA14 0.44 IKLFDK_17145 DNA helicase RecQ 0.56 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.55 2
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.56 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.56 QF045_RS02225 ATP-dependent DNA helicase RecG low > 93
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG low > 74
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.22 5
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.46 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.40 14
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.56 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_07560 DNA helicase RecQ 0.31 CA264_15020 DNA helicase RecG 0.55 10
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG low > 84
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.50 LRK53_RS16735 ATP-dependent DNA helicase RecG low > 59
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.55 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas sp. RS175 0.44 PFR28_00788 ATP-dependent DNA helicase RecQ 0.55 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.56 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 2
Pseudomonas sp. SVBP6 0.44 COO64_RS21845 recQ DNA helicase RecQ 0.56 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 93
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_04050 ATP-dependent DNA helicase RecQ 0.55 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.56 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS20865 DNA helicase RecQ 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21505 DNA helicase RecQ 0.32 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_18430 ATP-dependent DNA helicase RecQ 0.55 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas segetis P6 0.43 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.58 MPMX49_00040 ATP-dependent DNA helicase RecG low > 75
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.56 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas stutzeri RCH2 0.43 Psest_1869 ATP-dependent DNA helicase RecQ 0.56 Psest_4192 ATP-dependent DNA helicase RecG — —
Lysobacter sp. OAE881 0.43 ABIE51_RS05145 DNA helicase RecQ 0.52 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Methylophilus sp. DMC18 0.43 GFF2139 ATP-dependent DNA helicase RecQ 0.46 GFF2125 ATP-dependent DNA helicase RecG low > 43
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.49 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.31 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.29 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Agrobacterium fabrum C58 0.42 Atu0061 ATP-dependent DNA helicase 0.33 Atu1780 ATP-dependent DNA helicase low > 89
Rhizobium sp. OAE497 0.42 ABIE40_RS12745 DNA helicase RecQ 0.33 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.43 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.47 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.46 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG — —
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.33 SMc00228 ATP-dependent DNA helicase RecG low > 103
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_0784 ATP-dependent DNA helicase RecQ 0.31 Echvi_1162 ATP-dependent DNA helicase RecG 0.27 78
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.31 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.59 15
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.44 RS_RS13565 DNA helicase RecG — —
Variovorax sp. OAS795 0.41 ABID97_RS03395 DNA helicase RecQ 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.44 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.44 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.44 UW163_RS07950 DNA helicase RecG — —
Phaeobacter inhibens DSM 17395 0.41 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS14585 DNA helicase RecQ 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS10235 DNA helicase RecQ 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Cellulophaga baltica 18 0.40 M666_RS16920 DNA helicase RecQ 0.32 M666_RS15340 ATP-dependent DNA helicase RecG low > 67
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14110 DNA helicase RecQ 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Dinoroseobacter shibae DFL-12 0.40 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.57 9
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.39 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.43 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Rhodospirillum rubrum S1H 0.39 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS01195 DNA helicase RecQ 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS14575 DNA helicase RecQ 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Sphingobium sp. HT1-2 0.36 GFF798 ATP-dependent DNA helicase RecQ 0.32 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.70 15
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS08905 DNA helicase RecQ 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG low > 88
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.31 HUW76_01465 ATP-dependent DNA helicase RecG low > 35
Caulobacter crescentus NA1000 0.32 CCNA_03578 ATP-dependent DNA helicase recQ 0.32 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03578 ATP-dependent DNA helicase recQ 0.32 CCNA_01504 ATP-dependent DNA helicase recG low > 67

Not shown: 2 genomes with orthologs for Shew_3474 only; 5 genomes with orthologs for Shew_3507 only