Conservation of cofitness between Shew_3470 and Shew_3472 in Shewanella loihica PV-4

104 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 1.0 Shew_3472 2-isopropylmalate synthase (RefSeq) 0.99 6
Shewanella sp. ANA-3 0.90 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.86 Shewana3_3761 2-isopropylmalate synthase (RefSeq) 0.99 1
Shewanella oneidensis MR-1 0.88 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.86 SO4236 leuA 2-isopropylmalate synthase (NCBI ptt file) 0.99 3
Shewanella amazonensis SB2B 0.86 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.87 Sama_0335 2-isopropylmalate synthase (RefSeq) 0.98 7
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.66 IAI47_16000 2-isopropylmalate synthase 0.99 1
Pantoea agglomerans CFBP13505 P0401 0.72 PagCFBP13505_RS12990 3-isopropylmalate dehydratase large subunit 0.65 PagCFBP13505_RS13000 2-isopropylmalate synthase low > 74
Dickeya dadantii 3937 0.72 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.66 DDA3937_RS18115 2-isopropylmalate synthase 0.96 2
Escherichia fergusonii Becca 0.72 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.66 EFB2_03971 2-isopropylmalate synthase low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.66 EX28DRAFT_3670 2-isopropylmalate synthase (EC 2.3.3.13) 0.97 2
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 OKFHMN_10715 2-isopropylmalate synthase 0.98 15
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.70 EX31_RS03680 2-isopropylmalate synthase 0.96 35
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 KEDOAH_17440 2-isopropylmalate synthase
Escherichia coli ECRC62 0.72 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 BNILDI_08550 2-isopropylmalate synthase 0.99 4
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 JDDGAC_14310 2-isopropylmalate synthase 0.97 9
Escherichia coli BW25113 0.72 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.66 b0074 leuA 2-isopropylmalate synthase (NCBI) 0.99 2
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 NIAGMN_08565 2-isopropylmalate synthase 0.99 3
Escherichia coli ECOR27 0.72 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 NOLOHH_03060 2-isopropylmalate synthase 0.99 1
Escherichia coli BL21 0.72 ECD_00074 3-isopropylmalate dehydratase large subunit 0.66 ECD_00076 2-isopropylmalate synthase 0.97 8
Escherichia coli ECOR38 0.72 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 HEPCGN_08695 2-isopropylmalate synthase 0.99 3
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.66 MCAODC_01230 2-isopropylmalate synthase 0.98 2
Escherichia coli Nissle 1917 0.72 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.66 ECOLIN_RS00400 2-isopropylmalate synthase 0.96 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.66 OHPLBJKB_03583 2-isopropylmalate synthase low > 74
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.69 IAI46_03355 2-isopropylmalate synthase 0.59 56
Enterobacter sp. TBS_079 0.71 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.66 MPMX20_00769 2-isopropylmalate synthase 0.97 2
Dickeya dianthicola ME23 0.71 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.66 DZA65_RS19200 2-isopropylmalate synthase 0.94 3
Klebsiella pneumoniae MKP103 0.71 KDGMDA_12900 3-isopropylmalate dehydratase large subunit 1 0.65 KDGMDA_12910 2-isopropylmalate synthase low > 95
Dickeya dianthicola 67-19 0.71 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.67 HGI48_RS18055 2-isopropylmalate synthase 0.90 1
Klebsiella michiganensis M5al 0.71 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.66 BWI76_RS04680 2-isopropylmalate synthase 0.96 2
Pectobacterium carotovorum WPP14 0.71 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.66 HER17_RS03085 2-isopropylmalate synthase 0.99 2
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.70 CSW01_12595 2-isopropylmalate synthase low > 62
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.64 LU632_RS02880 leuA 2-isopropylmalate synthase 0.94 3
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_06005 leuC 3-isopropylmalate dehydratase large subunit 0.64 IJEDHG_05995 leuA 2-isopropylmalate synthase 0.90 14
Alteromonas macleodii MIT1002 0.68 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.68 MIT1002_00949 2-isopropylmalate synthase 0.99 9
Erwinia amylovora T8 0.66 OLJFJH_01295 3-isopropylmalate dehydratase large subunit 0.63 OLJFJH_01285 2-isopropylmalate synthase 0.96 2
Agrobacterium fabrum C58 0.63 Atu2709 3-isopropylmalate dehydratase, large subunit 0.10 Atu2264 2-isopropylmalate synthase 0.99 1
Sinorhizobium meliloti 1021 0.63 SMc03823 isopropylmalate isomerase large subunit 0.14 SMc02546 alpha-isopropylmalate/homocitrate synthase family transferase low > 103
Rhizobium sp. OAE497 0.62 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.14 ABIE40_RS06220 citramalate synthase low > 107
Rhodopseudomonas palustris CGA009 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit 0.42 TX73_010545 2-isopropylmalate synthase
Methylophilus sp. DMC18 0.62 GFF646 3-isopropylmalate dehydratase large subunit 0.43 GFF1746 2-isopropylmalate synthase
Magnetospirillum magneticum AMB-1 0.62 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.46 AMB_RS17765 2-isopropylmalate synthase
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.12 ABCV34_RS12420 2-isopropylmalate synthase 0.93 4
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.44 ABZR87_RS14930 2-isopropylmalate synthase low > 80
Ralstonia solanacearum GMI1000 0.60 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.44 RS_RS10395 2-isopropylmalate synthase low > 80
Bosea sp. OAE506 0.60 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.43 ABIE41_RS13000 2-isopropylmalate synthase
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.10 PP_1025 2-isopropylmalate synthase 0.88 13
Pseudomonas sp. BP01 0.60 JOY50_RS16630 leuC 3-isopropylmalate dehydratase large subunit 0.10 JOY50_RS11470 leuA 2-isopropylmalate synthase 0.98 4
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.43 RALBFv3_RS03025 2-isopropylmalate synthase low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.43 UW163_RS10700 2-isopropylmalate synthase
Ralstonia solanacearum PSI07 0.60 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.44 RPSI07_RS14285 2-isopropylmalate synthase low > 81
Paraburkholderia graminis OAS925 0.60 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.46 ABIE53_001580 2-isopropylmalate synthase low > 113
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.39 Xcc-8004.1056.1 2-isopropylmalate synthase (EC 2.3.3.13) 0.89 15
Pseudomonas sp. SVBP6 0.60 COO64_RS05665 leuC 3-isopropylmalate dehydratase large subunit 0.10 COO64_RS04630 leuA 2-isopropylmalate synthase 0.99 3
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.45 QEN71_RS24195 2-isopropylmalate synthase low > 153
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.43 RR42_RS05465 2-isopropylmalate synthase 0.41 58
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.46 H281DRAFT_04556 2-isopropylmalate synthase low > 103
Pseudomonas sp. DMC3 0.60 GFF785 3-isopropylmalate dehydratase large subunit 0.10 GFF4332 2-isopropylmalate synthase 0.98 5
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS33915 isopropylmalate isomerase 0.46 BPHYT_RS06570 2-isopropylmalate synthase low > 109
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.10 Pf1N1B4_847 2-isopropylmalate synthase (EC 2.3.3.13) 0.94 1
Pseudomonas stutzeri RCH2 0.60 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.46 Psest_1056 2-isopropylmalate synthase, bacterial type low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.45 GFF4281 2-isopropylmalate synthase (EC 2.3.3.13) 0.58 46
Pseudomonas sp. RS175 0.59 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.10 PFR28_00305 2-isopropylmalate synthase 0.81 2
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.10 PS417_23110 2-isopropylmalate synthase 0.93 2
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.46 HP15_538 2-isopropylmalate synthase low > 73
Variovorax sp. OAS795 0.59 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.43 ABID97_RS14910 2-isopropylmalate synthase
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.10 PfGW456L13_4854 2-isopropylmalate synthase (EC 2.3.3.13) 0.97 5
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.44 Ac3H11_530 2-isopropylmalate synthase (EC 2.3.3.13) low > 79
Pseudomonas orientalis W4I3 0.59 QF045_RS20740 3-isopropylmalate dehydratase large subunit 0.10 QF045_RS25330 2-isopropylmalate synthase low > 93
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.10 Pf6N2E2_3170 2-isopropylmalate synthase (EC 2.3.3.13) 0.87 4
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.10 AO356_06550 2-isopropylmalate synthase 0.96 2
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.10 PFLU_RS24765 2-isopropylmalate synthase 0.92 2
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.10 PFLU_RS24765 2-isopropylmalate synthase 0.95 2
Pseudomonas segetis P6 0.59 ACVTMO_RS15230 leuC 3-isopropylmalate dehydratase large subunit 0.11 ACVTMO_RS07560 leuA 2-isopropylmalate synthase 0.96 3
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_03948 3-isopropylmalate dehydratase large subunit 0.10 GEMAOFIL_04774 2-isopropylmalate synthase 0.74 24
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.11 OH686_17570 2-isopropylmalate synthase 0.76 23
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.10 Psyr_1257 2-isopropylmalate synthase 0.94 5
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.10 Psyr_1257 2-isopropylmalate synthase 0.94 5
Variovorax sp. SCN45 0.59 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.42 GFF1165 2-isopropylmalate synthase (EC 2.3.3.13) low > 127
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.45 Dsui_3519 2-isopropylmalate synthase, bacterial type
Xanthobacter sp. DMC5 0.58 GFF1852 3-isopropylmalate dehydratase large subunit 0.44 GFF2400 2-isopropylmalate synthase
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.41 CCNA_01610 2-isopropylmalate synthase low > 67
Caulobacter crescentus NA1000 0.58 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.41 CCNA_01610 2-isopropylmalate synthase low > 66
Acinetobacter baumannii LAC-4 0.58 RR41_RS16900 3-isopropylmalate dehydratase large subunit 0.10 RR41_RS16605 2-isopropylmalate synthase low > 55
Dinoroseobacter shibae DFL-12 0.58 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.37 Dshi_0596 2-isopropylmalate synthase (RefSeq) 0.75 10
Phaeobacter inhibens DSM 17395 0.57 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.40 PGA1_c26470 2-isopropylmalate synthase LeuA 0.95 4
Acinetobacter radioresistens SK82 0.57 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.11 MPMX26_00404 2-isopropylmalate synthase 0.92 17
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.11 Ga0059261_4031 2-isopropylmalate synthase, yeast type 0.99 1
Sphingobium sp. HT1-2 0.56 GFF2630 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.10 GFF2060 2-isopropylmalate synthase (EC 2.3.3.13) 0.90 12
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10335 3-isopropylmalate dehydratase large subunit 0.41 LRK54_RS10345 2-isopropylmalate synthase 0.93 4
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS03110 3-isopropylmalate dehydratase large subunit 0.40 LRK53_RS03120 2-isopropylmalate synthase 0.84 9
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.41 LRK55_RS09985 2-isopropylmalate synthase low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.40 ABIE51_RS17570 2-isopropylmalate synthase 0.86 57
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.43 HMPREF1181_RS14150 2-isopropylmalate synthase 0.97 2
Bacteroides ovatus ATCC 8483 0.52 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.43 BACOVA_04604 2-isopropylmalate synthase 0.91 26
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.42 ABZR86_RS15970 2-isopropylmalate synthase 0.98 2
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.42 Synpcc7942_1410 leuA 2-isopropylmalate synthase
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.44 HMPREF1078_RS16665 2-isopropylmalate synthase 0.97 3
Bacteroides thetaiotaomicron VPI-5482 0.51 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.43 BT1861 2-isopropylmalate synthase (EC 2.3.3.13) (from data) 0.91 3
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.39 OKGIIK_13575 leuA 2-isopropylmalate synthase 0.93 13
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.43 ABI39_RS10195 2-isopropylmalate synthase 0.89 6
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.44 HMPREF1058_RS14545 2-isopropylmalate synthase 0.88 15
Synechocystis sp000284455 PCC 6803 0.50 SGL_RS17620 3-isopropylmalate dehydratase large subunit 0.42 SGL_RS12850 2-isopropylmalate synthase
Methanococcus maripaludis JJ 0.23 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit 0.31 MMJJ_RS08870 2-isopropylmalate synthase
Methanococcus maripaludis S2 0.23 MMP_RS05930 3-isopropylmalate dehydratase large subunit 0.31 MMP_RS05500 2-isopropylmalate synthase 0.73 4
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.43 DvMF_1791 2-isopropylmalate synthase (RefSeq) 0.96 11
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.43 DVU2981 leuA 2-isopropylmalate synthase (TIGR) 0.98 3

Not shown: 18 genomes with orthologs for Shew_3470 only; 0 genomes with orthologs for Shew_3472 only