| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 1.0 | BT3758 | | N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) | 0.73 | 19 |
| Bacteroides ovatus ATCC 8483 | 0.97 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.95 | BACOVA_03588 | | aminotransferase, class III | 0.93 | 34 |
| Bacteroides stercoris CC31F | 0.88 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.87 | HMPREF1181_RS03445 | | aspartate aminotransferase family protein | 0.98 | 6 |
| Phocaeicola vulgatus CL09T03C04 | 0.85 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | 0.83 | HMPREF1058_RS08835 | | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.84 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.83 | ABI39_RS02965 | | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | 0.57 | 56 |
| Parabacteroides merdae CL09T00C40 | 0.67 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.75 | HMPREF1078_RS10585 | | aspartate aminotransferase family protein | 0.96 | 24 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.57 | CA264_02390 | | diaminopimelate decarboxylase | 0.56 | CA264_06245 | | aspartate aminotransferase family protein | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.54 | ABZR88_RS10180 | | diaminopimelate decarboxylase | 0.63 | ABZR88_RS15500 | | aspartate aminotransferase family protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.54 | CA265_RS09650 | | diaminopimelate decarboxylase | 0.58 | CA265_RS18530 | | aspartate aminotransferase family protein | 0.83 | 45 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.28 | MIT1002_00437 | | Succinylornithine transaminase/acetylornithine aminotransferase | 0.83 | 25 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS17930 | | diaminopimelate decarboxylase | 0.30 | BPHYT_RS07695 | | acetylornithine aminotransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_05606 | | diaminopimelate decarboxylase | 0.29 | H281DRAFT_06478 | | succinylornithine aminotransferase apoenzyme | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS16945 | | diaminopimelate decarboxylase | 0.28 | AZOBR_RS19025 | | acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) | — | — |
| Shewanella loihica PV-4 | 0.35 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.27 | Shew_0578 | argD | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) | low | > 60 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00723 | | diaminopimelate DAP decarboxylase | 0.31 | SMc02138 | | acetylornithine transaminase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.30 | QEN71_RS23375 | | aspartate aminotransferase family protein | — | — |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003749 | | diaminopimelate decarboxylase | 0.30 | ABIE53_001769 | | succinylornithine aminotransferase | low | > 113 |
| Shewanella oneidensis MR-1 | 0.35 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.27 | SO0617 | argD | acetylornithine aminotransferase (NCBI ptt file) | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | 0.27 | OKGIIK_17070 | astC | acetylornithine transaminase | low | > 52 |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.25 | ABZR87_RS05190 | | 4-aminobutyrate--2-oxoglutarate transaminase | low | > 80 |
| Shewanella sp. ANA-3 | 0.35 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.27 | Shewana3_0610 | argD | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) | 0.87 | 73 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS13675 | | diaminopimelate decarboxylase | 0.27 | ABIE51_RS17420 | | acetylornithine/succinyldiaminopimelate transaminase | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS00950 | | diaminopimelate decarboxylase | 0.27 | HSERO_RS05420 | | 4-aminobutyrate aminotransferase | — | — |
| Shewanella amazonensis SB2B | 0.34 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.28 | Sama_3011 | argD | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) | low | > 62 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_05819 | | Diaminopimelate decarboxylase | 0.28 | MPMX19_02177 | | Succinylornithine transaminase/acetylornithine aminotransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_024635 | | diaminopimelate decarboxylase | 0.29 | TX73_024810 | | aspartate aminotransferase family protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS12130 | | diaminopimelate decarboxylase | 0.28 | ABZR86_RS17400 | | acetylornithine transaminase | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS14930 | | diaminopimelate decarboxylase | 0.24 | RS_RS00145 | | 4-aminobutyrate--2-oxoglutarate transaminase | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_1182 | | diaminopimelate decarboxylase | 0.30 | Dsui_3250 | | acetylornithine/succinylornithine aminotransferase | — | — |
| Agrobacterium fabrum C58 | 0.34 | Atu3601 | | diaminopimelate decarboxylase | 0.31 | Atu0428 | | acetylornithine aminotransferase | — | — |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS17530 | | diaminopimelate decarboxylase | 0.30 | ABIE40_RS02320 | | aspartate aminotransferase family protein | 0.94 | 26 |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS11215 | | diaminopimelate decarboxylase | 0.28 | LRK55_RS04275 | | acetyl ornithine aminotransferase family protein | low | > 63 |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_00635 | | diaminopimelate decarboxylase | 0.31 | CSW01_13250 | | aspartate aminotransferase family protein | 0.46 | 11 |
| Dinoroseobacter shibae DFL-12 | 0.33 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | 0.26 | Dshi_0798 | | acetylornithine and succinylornithine aminotransferase (RefSeq) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_02296 | | diaminopimelate decarboxylase | 0.30 | CCNA_00620 | | acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS11485 | | diaminopimelate decarboxylase | 0.28 | LRK54_RS04500 | | acetyl ornithine aminotransferase family protein | low | > 59 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_02296 | | diaminopimelate decarboxylase | 0.30 | CCNA_00620 | | acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase | — | — |
| Marinobacter adhaerens HP15 | 0.33 | HP15_247 | | diaminopimelate decarboxylase | 0.30 | HP15_3042 | | acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | 0.28 | PGA1_c24230 | | acetylornithine aminotransferase ArgD | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.33 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.31 | Ga0059261_3205 | | transaminase, acetylornithine/succinylornithine family | 0.98 | 18 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS19050 | | diaminopimelate decarboxylase | 0.26 | RR42_RS26160 | | 4-aminobutyrate aminotransferase | — | — |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS08740 | | diaminopimelate decarboxylase | 0.29 | ABIE41_RS04340 | | aspartate aminotransferase family protein | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.33 | DvMF_0353 | | diaminopimelate decarboxylase (RefSeq) | 0.26 | DvMF_3149 | | acetylornithine aminotransferase (RefSeq) | low | > 51 |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS22725 | | diaminopimelate decarboxylase | 0.27 | AMB_RS01605 | | aspartate aminotransferase family protein | — | — |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | 0.28 | Rru_A1147 | | Acetylornithine and succinylornithine aminotransferase (NCBI) | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.34 | GFF3927 | | N-acetylornithine aminotransferase (EC 2.6.1.11) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1647 | lysA-1 | diaminopimelate decarboxylase (TIGR) | 0.29 | DVU2347 | argD | acetylornithine aminotransferase (TIGR) | low | > 55 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_0182 | | diaminopimelate decarboxylase | 0.33 | Psyr_2358 | | acetylornithine aminotransferase apoenzyme | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_0182 | | diaminopimelate decarboxylase | 0.33 | Psyr_2358 | | acetylornithine aminotransferase apoenzyme | — | — |
| Pseudomonas putida KT2440 | 0.32 | PP_5227 | | diaminopimelate decarboxylase | 0.27 | PP_4481 | | Succinylornithine transaminase/acetylornithine aminotransferase | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_12740 | | diaminopimelate decarboxylase | 0.34 | AO356_17010 | | acetylornithine aminotransferase | — | — |
| Pseudomonas sp. RS175 | 0.32 | PFR28_04375 | | Diaminopimelate decarboxylase | 0.34 | PFR28_00252 | | Acetylornithine aminotransferase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.34 | Pf6N2E2_5326 | | Acetylornithine aminotransferase (EC 2.6.1.11) | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS23305 | | diaminopimelate decarboxylase | 0.34 | ABID97_RS08635 | | aspartate aminotransferase family protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_3764 | | diaminopimelate decarboxylase | 0.27 | Psest_2719 | | acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.33 | PfGW456L13_4910 | | Acetylornithine aminotransferase (EC 2.6.1.11) | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.33 | GFF3420 | | Acetylornithine aminotransferase (EC 2.6.1.11) | low | > 90 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.32 | Pf1N1B4_2980 | | Acetylornithine aminotransferase (EC 2.6.1.11) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.33 | PFLU_RS07995 | | aspartate aminotransferase family protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_09035 | | diaminopimelate decarboxylase | 0.32 | AO353_15640 | | acetylornithine aminotransferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.33 | PFLU_RS07995 | | aspartate aminotransferase family protein | low | > 109 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_13800 | | diaminopimelate decarboxylase | 0.28 | OH686_21290 | | Succinylornithine transaminase | low | > 80 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_27580 | | diaminopimelate decarboxylase | 0.33 | PS417_08025 | | acetylornithine aminotransferase | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS12685 | | diaminopimelate decarboxylase | 0.24 | ABCV34_RS01765 | | 4-aminobutyrate--2-oxoglutarate transaminase | — | — |
| Methanococcus maripaludis S2 | 0.30 | MMP_RS06180 | | diaminopimelate decarboxylase | 0.30 | MMP_RS05690 | | acetylornithine transaminase | — | — |
| Methanococcus maripaludis JJ | 0.30 | MMJJ_RS08170 | | diaminopimelate decarboxylase | 0.30 | MMJJ_RS08660 | | acetylornithine transaminase | low | > 28 |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02232 | | Diaminopimelate decarboxylase | 0.31 | MPMX26_01057 | | Acetylornithine aminotransferase | low | > 36 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS12545 | | diaminopimelate decarboxylase | 0.29 | A4249_RS11925 | | aspartate aminotransferase family protein | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.22 | Echvi_1295 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.53 | Echvi_3848 | | N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) | 0.81 | 41 |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_0272 | | pyridoxal-dependent decarboxylase, exosortase A system-associated | 0.28 | B158DRAFT_2221 | | acetylornithine and succinylornithine transaminases/succinylornithine transaminase family | — | — |
| Enterobacter sp. TBS_079 | 0.19 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.30 | MPMX20_04262 | | Acetylornithine/succinyldiaminopimelate aminotransferase | low | > 85 |
| Escherichia fergusonii Becca | 0.19 | EFB2_01045 | | Diaminopimelate decarboxylase | 0.30 | EFB2_00463 | | Acetylornithine/succinyldiaminopimelate aminotransferase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.19 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | 0.30 | ECOLIN_RS19240 | | bifunctional acetylornithine/succinyldiaminopimelate transaminase | low | > 52 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.29 | EX28DRAFT_1752 | | transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family | low | > 76 |
| Escherichia coli ECOR38 | 0.19 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | 0.30 | HEPCGN_16055 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | low | > 85 |
| Escherichia coli ECRC99 | 0.19 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | 0.30 | KEDOAH_10910 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Erwinia tracheiphila SCR3 | 0.19 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.31 | LU632_RS22810 | | aspartate aminotransferase family protein | 0.71 | 33 |
| Escherichia coli ECRC98 | 0.19 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | 0.30 | JDDGAC_20860 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Escherichia coli ECRC62 | 0.19 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | 0.30 | BNILDI_02490 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.19 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | 0.30 | OHPLBJKB_00343 | | Acetylornithine/succinyldiaminopimelate aminotransferase | low | > 73 |
| Escherichia coli BL21 | 0.19 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | 0.30 | ECD_03210 | | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase | low | > 60 |
| Escherichia coli BW25113 | 0.19 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 0.30 | b3359 | argD | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.19 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | 0.30 | NOLOHH_09030 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | low | > 57 |
| Escherichia coli ECRC101 | 0.19 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | 0.30 | OKFHMN_17230 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Escherichia coli ECRC101 | 0.19 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | 0.30 | MCAODC_07760 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Dickeya dianthicola ME23 | 0.19 | DZA65_RS00505 | | type III PLP-dependent enzyme | 0.29 | DZA65_RS20655 | | aspartate aminotransferase family protein | low | > 75 |
| Escherichia coli ECRC102 | 0.19 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | 0.30 | NIAGMN_15000 | argD,dapC | bifunctional acetylornithine/succinyldiaminopimelate transaminase | — | — |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS00505 | | type III PLP-dependent enzyme | 0.29 | HGI48_RS19570 | | aspartate aminotransferase family protein | low | > 71 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS20740 | | type III PLP-dependent enzyme | 0.29 | DDA3937_RS19450 | | aspartate aminotransferase family protein | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_3862 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.36 | Ac3H11_1332 | | Acetylornithine aminotransferase (EC 2.6.1.11) | — | — |
| Rahnella sp. WP5 | 0.18 | EX31_RS02420 | | type III PLP-dependent enzyme | 0.31 | EX31_RS04630 | | aspartate aminotransferase family protein | low | > 89 |
| Klebsiella michiganensis M5al | 0.18 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.29 | BWI76_RS26000 | | aspartate aminotransferase family protein | 0.59 | 74 |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.30 | HER17_RS01910 | | aspartate aminotransferase family protein | low | > 75 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_20520 | | diaminopimelate decarboxylase | 0.29 | IAI46_15335 | | aspartate aminotransferase family protein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.29 | GFF3710 | | Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) | low | > 78 |
| Mycobacterium tuberculosis H37Rv | 0.17 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | 0.29 | Rv1655 | | Probable acetylornithine aminotransferase ArgD | — | — |
| Pantoea sp. MT58 | 0.17 | IAI47_03860 | | diaminopimelate decarboxylase | 0.31 | IAI47_01955 | | aspartate aminotransferase family protein | low | > 76 |
Not shown: 3 genomes with orthologs for BT1374 only; 3 genomes with orthologs for BT3758 only