Conservation of cofitness between BT4003 and BT3718 in Bacteroides thetaiotaomicron VPI-5482

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT4003 stationary-phase survival protein SurE (NCBI ptt file) 1.0 BT3718 gamma-glutamyl phosphate reductase (NCBI ptt file) 0.32 7
Bacteroides ovatus ATCC 8483 0.84 BACOVA_04822 5'/3'-nucleotidase SurE 0.90 BACOVA_03534 glutamate-5-semialdehyde dehydrogenase low > 94
Bacteroides stercoris CC31F 0.74 HMPREF1181_RS09175 5'/3'-nucleotidase SurE 0.73 HMPREF1181_RS03320 glutamate-5-semialdehyde dehydrogenase low > 56
Phocaeicola vulgatus CL09T03C04 0.64 HMPREF1058_RS14085 5'/3'-nucleotidase SurE 0.61 HMPREF1058_RS08645 glutamate-5-semialdehyde dehydrogenase low > 67
Phocaeicola dorei CL03T12C01 0.64 ABI39_RS09735 5'/3'-nucleotidase SurE 0.62 ABI39_RS02875 glutamate-5-semialdehyde dehydrogenase low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS04545 5'/3'-nucleotidase SurE 0.68 HMPREF1078_RS10655 glutamate-5-semialdehyde dehydrogenase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS16310 5'/3'-nucleotidase SurE 0.58 CA265_RS20850 glutamate-5-semialdehyde dehydrogenase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_3388 5'/3'-nucleotidase SurE 0.28 Echvi_2633 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_12185 5'/3'-nucleotidase SurE 0.64 CA264_07720 gamma-glutamyl-phosphate reductase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS03555 5'/3'-nucleotidase SurE 0.60 ABZR88_RS22165 glutamate-5-semialdehyde dehydrogenase — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2063 surE stationary phase survival protein SurE 0.29 Synpcc7942_2265 proA glutamate-5-semialdehyde dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_02820 5'-nucleotidase SurE 0.37 CSW01_11570 glutamate-5-semialdehyde dehydrogenase low > 62
Acinetobacter radioresistens SK82 0.27 MPMX26_01054 5'-nucleotidase SurE 0.35 MPMX26_00417 Gamma-glutamyl phosphate reductase low > 36
Pseudomonas fluorescens SBW25 0.26 PFLU_RS06415 5'/3'-nucleotidase SurE 0.32 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS14845 stationary phase survival protein SurE 0.34 HSERO_RS02965 gamma-glutamyl phosphate reductase low > 78
Pseudomonas putida KT2440 0.26 PP_1620 5'(3')-nucleotidase and polyphosphatase 0.33 PP_4811 Gamma-glutamyl phosphate reductase low > 96
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS06415 5'/3'-nucleotidase SurE 0.32 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_2296 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.34 B158DRAFT_1470 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 40
Pseudomonas simiae WCS417 0.26 PS417_06350 stationary phase survival protein SurE 0.32 PS417_24745 gamma-glutamyl phosphate reductase low > 88
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS06595 5'/3'-nucleotidase SurE 0.34 ABZR86_RS08680 glutamate-5-semialdehyde dehydrogenase low > 74
Rhodanobacter denitrificans MT42 0.26 LRK55_RS16375 5'/3'-nucleotidase SurE 0.33 LRK55_RS02125 glutamate-5-semialdehyde dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS16650 5'/3'-nucleotidase SurE 0.33 LRK54_RS02370 glutamate-5-semialdehyde dehydrogenase low > 59
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_08115 surE 5'/3'-nucleotidase SurE 0.30 OKGIIK_09415 proA glutamate-5-semialdehyde dehydrogenase low > 52
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_16600 stationary phase survival protein SurE 0.33 AO353_06495 gamma-glutamyl phosphate reductase low > 101
Pseudomonas sp. S08-1 0.25 OH686_18170 5'/3'-nucleotidase SurE 0.32 OH686_09340 Gamma-glutamyl phosphate reductase low > 80
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_0278 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.32 Ga0059261_2506 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 68
Shewanella loihica PV-4 0.25 Shew_1210 stationary-phase survival protein SurE (RefSeq) 0.35 Shew_2847 proA gamma-glutamyl phosphate reductase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.25 SO3435 surE stationary-phase survival protein SurE (NCBI ptt file) 0.34 SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) 0.86 33
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.34 Psyr_4369 glutamate-5-semialdehyde dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.34 Psyr_4369 glutamate-5-semialdehyde dehydrogenase low > 86
Dechlorosoma suillum PS 0.25 Dsui_1968 5''/3''-nucleotidase SurE 0.31 Dsui_1220 gamma-glutamyl phosphate reductase — —
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS22255 5'/3'-nucleotidase SurE 0.34 QEN71_RS26940 glutamate-5-semialdehyde dehydrogenase low > 153
Shewanella amazonensis SB2B 0.25 Sama_1041 surE stationary phase survival protein SurE (RefSeq) 0.34 Sama_2515 proA gamma-glutamyl phosphate reductase (RefSeq) 0.73 26
Shewanella sp. ANA-3 0.25 Shewana3_1121 surE stationary phase survival protein SurE (RefSeq) 0.34 Shewana3_0955 proA gamma-glutamyl phosphate reductase (RefSeq) 0.68 31
Serratia liquefaciens MT49 0.25 IAI46_03775 5'/3'-nucleotidase SurE 0.37 IAI46_04435 glutamate-5-semialdehyde dehydrogenase low > 86
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS10860 5'/3'-nucleotidase SurE 0.31 ABZR87_RS01395 glutamate-5-semialdehyde dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3131.1 hypothetical protein 0.31 Xcc-8004.2327.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 74
Rhodospirillum rubrum S1H 0.24 Rru_A1769 Acid phosphatase (NCBI) 0.33 Rru_A1238 Gamma-glutamyl phosphate reductase GPR (NCBI) — —
Variovorax sp. SCN45 0.24 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.30 GFF6326 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.86 38
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS09100 stationary phase survival protein SurE 0.32 BPHYT_RS16770 gamma-glutamyl phosphate reductase — —
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_4678 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.33 PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Paraburkholderia graminis OAS925 0.24 ABIE53_002054 5'-nucleotidase 0.32 ABIE53_003523 glutamate-5-semialdehyde dehydrogenase low > 113
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_0021 stationary-phase survival protein SurE (RefSeq) 0.32 DvMF_0612 proA gamma-glutamyl phosphate reductase (RefSeq) low > 51
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00840 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase 0.32 H281DRAFT_06324 glutamate-5-semialdehyde dehydrogenase low > 103
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3112 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.33 Pf1N1B4_2688 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Erwinia tracheiphila SCR3 0.24 LU632_RS06465 surE 5'/3'-nucleotidase SurE 0.36 LU632_RS01190 proA glutamate-5-semialdehyde dehydrogenase low > 74
Ralstonia solanacearum GMI1000 0.24 RS_RS06030 5'-nucleotidase SurE 0.31 RS_RS13715 gamma-glutamyl-phosphate reductase — —
Ralstonia solanacearum PSI07 0.24 RPSI07_RS18155 5'/3'-nucleotidase SurE 0.31 RPSI07_RS11475 glutamate-5-semialdehyde dehydrogenase low > 81
Lysobacter sp. OAE881 0.24 ABIE51_RS06485 5'/3'-nucleotidase SurE 0.30 ABIE51_RS13365 glutamate-5-semialdehyde dehydrogenase low > 62
Rahnella sp. WP5 0.24 EX31_RS07840 5'/3'-nucleotidase SurE 0.37 EX31_RS20975 glutamate-5-semialdehyde dehydrogenase low > 89
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU2142 surE stationary-phase survival protein SurE (TIGR) 0.32 DVU1953 proA gamma-glutamyl phosphate reductase (TIGR) low > 55
Variovorax sp. OAS795 0.23 ABID97_RS10715 5'/3'-nucleotidase SurE 0.29 ABID97_RS04600 glutamate-5-semialdehyde dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS15220 5'/3'-nucleotidase SurE 0.31 RALBFv3_RS05825 glutamate-5-semialdehyde dehydrogenase low > 76
Ralstonia solanacearum UW163 0.23 UW163_RS12685 5'/3'-nucleotidase SurE 0.31 UW163_RS07800 glutamate-5-semialdehyde dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF3879 5-nucleotidase SurE (EC 3.1.3.5) 0.31 GFF2641 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 90
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_3040 5-nucleotidase SurE (EC 3.1.3.5) 0.33 Pf6N2E2_4993 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 103
Pseudomonas sp. RS175 0.23 PFR28_00424 '5'-nucleotidase SurE' transl_table=11 0.33 PFR28_03872 Gamma-glutamyl phosphate reductase — —
Sinorhizobium meliloti 1021 0.23 SMc02063 stationary phase survival protein SurE 0.32 SMc03777 gamma-glutamyl phosphate reductase — —
Agrobacterium fabrum C58 0.23 Atu1702 stationary-phase survival protein 0.34 Atu2779 gamma-glutamyl phosphate reductase — —
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS13200 stationary phase survival protein SurE 0.30 RR42_RS17530 gamma-glutamyl phosphate reductase low > 128
Enterobacter sp. TBS_079 0.23 MPMX20_03630 5'/3'-nucleotidase SurE 0.39 MPMX20_00928 Gamma-glutamyl phosphate reductase low > 85
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2840 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.38 EX28DRAFT_2650 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 76
Pseudomonas stutzeri RCH2 0.23 Psest_2810 5'/3'-nucleotidase SurE 0.32 Psest_0508 gamma-glutamyl phosphate reductase 0.34 13
Bosea sp. OAE506 0.23 ABIE41_RS15015 5'/3'-nucleotidase SurE 0.28 ABIE41_RS07580 glutamate-5-semialdehyde dehydrogenase — —
Castellaniella sp019104865 MT123 0.23 ABCV34_RS03030 5'/3'-nucleotidase SurE 0.34 ABCV34_RS00845 glutamate-5-semialdehyde dehydrogenase — —
Pantoea sp. MT58 0.23 IAI47_04220 5'/3'-nucleotidase SurE 0.37 IAI47_15115 glutamate-5-semialdehyde dehydrogenase 0.53 11
Acidovorax sp. GW101-3H11 0.22 Ac3H11_1784 5-nucleotidase SurE (EC 3.1.3.5) 0.31 Ac3H11_704 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS04645 5'/3'-nucleotidase SurE 0.26 A4249_RS16120 glutamate-5-semialdehyde dehydrogenase low > 48
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_05900 stationary phase survival protein SurE 0.33 AO356_15290 gamma-glutamyl phosphate reductase low > 104
Phaeobacter inhibens DSM 17395 0.22 PGA1_c10770 5'-nucleotidase SurE 0.33 PGA1_c15520 gamma-glutamyl phosphate reductase ProA low > 62
Klebsiella michiganensis M5al 0.22 BWI76_RS22660 5'/3'-nucleotidase SurE 0.38 BWI76_RS05835 gamma-glutamyl-phosphate reductase low > 92
Marinobacter adhaerens HP15 0.22 HP15_1279 stationary-phase survival protein SurE 0.33 HP15_601 gamma-glutamyl phosphate reductase — —
Caulobacter crescentus NA1000 0.22 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.29 CCNA_03543 gamma-glutamyl phosphate reductase low > 66
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.29 CCNA_03543 gamma-glutamyl phosphate reductase low > 67
Escherichia coli ECRC98 0.22 JDDGAC_24145 surE 5'/3'-nucleotidase SurE 0.37 JDDGAC_13295 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.22 BNILDI_10845 surE 5'/3'-nucleotidase SurE 0.37 BNILDI_00240 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.22 b2744 surE acid phosphatase (NCBI) 0.37 b0243 proA gamma-glutamyl phosphate reductase (NCBI) low > 76
Escherichia coli ECRC102 0.22 NIAGMN_18250 surE 5'/3'-nucleotidase SurE 0.37 NIAGMN_07530 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.22 MCAODC_11005 surE 5'/3'-nucleotidase SurE 0.37 MCAODC_00190 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.22 ECOLIN_RS15345 5'/3'-nucleotidase SurE 0.37 ECOLIN_RS01830 glutamate-5-semialdehyde dehydrogenase low > 52
Escherichia fergusonii Becca 0.22 EFB2_01166 5'/3'-nucleotidase SurE 0.36 EFB2_03777 Gamma-glutamyl phosphate reductase low > 86
Escherichia coli BL21 0.22 ECD_02594 broad specificity 5'(3')-nucleotidase and polyphosphatase 0.38 ECD_00240 gamma-glutamylphosphate reductase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_00989 '5'/3'-nucleotidase SurE' transl_table=11 0.37 OHPLBJKB_03397 Gamma-glutamyl phosphate reductase 0.32 69
Escherichia coli ECRC99 0.22 KEDOAH_07660 surE 5'/3'-nucleotidase SurE 0.37 KEDOAH_18485 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.22 OKFHMN_20480 surE 5'/3'-nucleotidase SurE 0.37 OKFHMN_09670 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECOR27 0.22 NOLOHH_12295 surE 5'/3'-nucleotidase SurE 0.37 NOLOHH_02045 proA glutamate-5-semialdehyde dehydrogenase low > 57
Rhizobium sp. OAE497 0.22 ABIE40_RS08480 5'/3'-nucleotidase SurE 0.35 ABIE40_RS18925 glutamate-5-semialdehyde dehydrogenase low > 107
Escherichia coli ECOR38 0.22 HEPCGN_19660 surE 5'/3'-nucleotidase SurE 0.37 HEPCGN_07775 proA glutamate-5-semialdehyde dehydrogenase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF4792 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.39 GFF4115 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 78
Magnetospirillum magneticum AMB-1 0.21 AMB_RS12675 5'-nucleotidase SurE 0.34 AMB_RS20640 glutamate-5-semialdehyde dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.20 TX73_014710 5'/3'-nucleotidase SurE 0.30 TX73_000855 glutamate-5-semialdehyde dehydrogenase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS15460 5'-nucleotidase 0.33 AZOBR_RS04075 gamma-glutamyl phosphate reductase — —
Azospirillum sp. SherDot2 0.19 MPMX19_01169 5'-nucleotidase SurE 0.35 MPMX19_01943 Gamma-glutamyl phosphate reductase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_2136 stationary-phase survival protein SurE (RefSeq) 0.33 Dshi_1469 gamma-glutamyl phosphate reductase (RefSeq) — —

Not shown: 2 genomes with orthologs for BT4003 only; 7 genomes with orthologs for BT3718 only