| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT4383 | | putative sugar kinase (NCBI ptt file) | 1.0 | BT3260 | | DNA polymerase I (NCBI ptt file) | 0.28 | 1 |
| Bacteroides ovatus ATCC 8483 | 0.94 | BACOVA_05215 | | YjeF domain protein | 0.93 | BACOVA_01357 | | DNA-directed DNA polymerase | low | > 94 |
| Bacteroides stercoris CC31F | 0.76 | HMPREF1181_RS06260 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.83 | HMPREF1181_RS02070 | | DNA polymerase I | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.67 | HMPREF1058_RS00705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.79 | HMPREF1058_RS11500 | | DNA polymerase I | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.67 | ABI39_RS08310 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.79 | ABI39_RS05440 | | DNA polymerase I | — | — |
| Parabacteroides merdae CL09T00C40 | 0.51 | HMPREF1078_RS15325 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.64 | HMPREF1078_RS06335 | | DNA polymerase I | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.43 | CA264_16280 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.49 | CA264_16535 | | DNA polymerase I | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.35 | ABZR88_RS18865 | | NAD(P)H-hydrate dehydratase | 0.49 | ABZR88_RS20185 | | DNA polymerase I | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_0073 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.50 | Echvi_1032 | | DNA polymerase I | low | > 79 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.31 | CA265_RS24885 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.50 | CA265_RS19630 | | DNA polymerase I | low | > 88 |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS12740 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.35 | ABZR87_RS15680 | | DNA polymerase I | low | > 80 |
| Pseudomonas sp. S08-1 | 0.21 | OH686_09495 | | NAD(P)H-hydrate epimerase / ADP-dependent (S)-NAD(P)H-hydrate dehydratase | 0.34 | OH686_12215 | | DNA polymerase I | low | > 80 |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS02030 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.36 | LU632_RS23870 | polA | DNA polymerase I | — | — |
| Pseudomonas stutzeri RCH2 | 0.21 | Psest_0678 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.35 | Psest_4219 | | DNA polymerase I | low | > 67 |
| Ralstonia solanacearum IBSBF1503 | 0.21 | RALBFv3_RS01295 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.34 | RALBFv3_RS03750 | | DNA polymerase I | low | > 76 |
| Ralstonia solanacearum UW163 | 0.21 | UW163_RS14605 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.34 | UW163_RS09920 | | DNA polymerase I | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.21 | AO353_13120 | | carbohydrate kinase | 0.34 | AO353_10930 | | DNA polymerase I | low | > 101 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_03793 | | Nicotinamide nucleotide repair protein | 0.36 | MIT1002_00014 | | DNA polymerase I | low | > 70 |
| Pectobacterium carotovorum WPP14 | 0.20 | HER17_RS02560 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | HER17_RS21470 | | DNA polymerase I | — | — |
| Serratia liquefaciens MT49 | 0.20 | IAI46_01600 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.36 | IAI46_24985 | | DNA polymerase I | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.20 | Pf1N1B4_1417 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.33 | Pf1N1B4_1875 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Bosea sp. OAE506 | 0.20 | ABIE41_RS16885 | | NAD(P)H-hydrate dehydratase | 0.30 | ABIE41_RS03570 | | DNA polymerase I | 0.46 | 7 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS16180 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.34 | RPSI07_RS13480 | | DNA polymerase I | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS08700 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.34 | RS_RS11195 | | DNA polymerase I | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.20 | ABZR86_RS00840 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.32 | ABZR86_RS17015 | | DNA polymerase I | low | > 74 |
| Pseudomonas sp. RS175 | 0.20 | PFR28_05116 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.32 | PFR28_04624 | | DNA polymerase I | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.20 | Pf6N2E2_3619 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.32 | Pf6N2E2_4162 | | DNA polymerase I (EC 2.7.7.7) | low | > 103 |
| Rhodanobacter denitrificans MT42 | 0.20 | LRK55_RS14850 | | NAD(P)H-hydrate dehydratase | 0.35 | LRK55_RS06585 | | DNA polymerase I | low | > 63 |
| Klebsiella michiganensis M5al | 0.20 | BWI76_RS02510 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.35 | BWI76_RS00355 | | DNA polymerase I | low | > 92 |
| Rahnella sp. WP5 | 0.20 | EX31_RS08845 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.35 | EX31_RS15905 | | DNA polymerase I | low | > 89 |
| Rhodanobacter denitrificans FW104-10B01 | 0.20 | LRK54_RS15135 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.35 | LRK54_RS06840 | | DNA polymerase I | low | > 59 |
| Dickeya dianthicola 67-19 | 0.20 | HGI48_RS18570 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | HGI48_RS21260 | | DNA polymerase I | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.19 | AO356_08680 | | carbohydrate kinase | 0.32 | AO356_11465 | | DNA polymerase I | low | > 104 |
| Shewanella oneidensis MR-1 | 0.19 | SO0598 | yjeF | yjeF protein (NCBI ptt file) | 0.35 | SO4669 | polA | DNA polymerase I (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.19 | HP15_2504 | | carbohydrate kinase, YjeF related protein | 0.32 | HP15_293 | | DNA polymerase I | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_159 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.33 | PfGW456L13_594 | | DNA polymerase I (EC 2.7.7.7) | low | > 87 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.19 | Xcc-8004.2253.1 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.32 | Xcc-8004.5105.1 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.19 | GFF820 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.36 | GFF2216 | | DNA polymerase I (EC 2.7.7.7) | low | > 78 |
| Rhodanobacter sp. FW510-T8 | 0.19 | OKGIIK_03905 | | Bifunctional NAD(P)H-hydrate repair enzyme | 0.34 | OKGIIK_16785 | polA | DNA polymerase I | low | > 52 |
| Dickeya dianthicola ME23 | 0.19 | DZA65_RS19705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | DZA65_RS22235 | | DNA polymerase I | — | — |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS18635 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.36 | DDA3937_RS00105 | | DNA polymerase I | — | — |
| Shewanella amazonensis SB2B | 0.19 | Sama_3030 | | YjeF protein (RefSeq) | 0.36 | Sama_0093 | | DNA-directed DNA polymerase (RefSeq) | low | > 62 |
| Escherichia coli BW25113 | 0.19 | b4167 | yjeF | predicted carbohydrate kinase (NCBI) | 0.37 | b3863 | polA | DNA polymerase I (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.19 | JDDGAC_15920 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | JDDGAC_17775 | polA | DNA polymerase I | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.19 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | 0.33 | Psyr_0270 | | DNA polymerase I | low | > 86 |
| Shewanella sp. ANA-3 | 0.19 | Shewana3_0592 | | carbohydrate kinase, YjeF related protein (RefSeq) | 0.36 | Shewana3_4109 | | DNA polymerase I (RefSeq) | — | — |
| Escherichia coli ECRC102 | 0.19 | NIAGMN_10130 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | NIAGMN_11905 | polA | DNA polymerase I | — | — |
| Escherichia coli ECRC101 | 0.19 | MCAODC_02795 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | MCAODC_04650 | polA | DNA polymerase I | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.19 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | 0.33 | Psyr_0270 | | DNA polymerase I | low | > 86 |
| Escherichia coli ECRC101 | 0.19 | OKFHMN_12280 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | OKFHMN_14150 | polA | DNA polymerase I | — | — |
| Escherichia coli ECRC99 | 0.19 | KEDOAH_15875 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | KEDOAH_14000 | polA | DNA polymerase I | — | — |
| Escherichia coli ECOR27 | 0.19 | NOLOHH_04545 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | NOLOHH_06280 | polA | DNA polymerase I | — | — |
| Escherichia coli ECOR38 | 0.19 | HEPCGN_10510 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | HEPCGN_12785 | polA | DNA polymerase I | — | — |
| Escherichia coli ECRC62 | 0.19 | BNILDI_06945 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | BNILDI_05250 | polA | DNA polymerase I | — | — |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_3364 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.37 | EX28DRAFT_4343 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.19 | OHPLBJKB_03875 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.37 | OHPLBJKB_04189 | | DNA polymerase I | — | — |
| Escherichia coli BL21 | 0.19 | ECD_04034 | | bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase | 0.37 | ECD_03749 | | 5 | — | — |
| Azospirillum sp. SherDot2 | 0.19 | MPMX19_01552 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.31 | MPMX19_04869 | | DNA polymerase I | low | > 112 |
| Escherichia fergusonii Becca | 0.18 | EFB2_04368 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.37 | EFB2_04753 | | DNA polymerase I | — | — |
| Herbaspirillum seropedicae SmR1 | 0.18 | HSERO_RS11180 | | sugar kinase | 0.34 | HSERO_RS02260 | | DNA polymerase I | low | > 78 |
| Enterobacter sp. TBS_079 | 0.18 | MPMX20_00448 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.36 | MPMX20_04601 | | DNA polymerase I | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_14940 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.36 | CSW01_00560 | | DNA polymerase I | low | > 62 |
| Pantoea sp. MT58 | 0.18 | IAI47_02565 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | IAI47_00430 | | DNA polymerase I | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.18 | QEN71_RS21930 | | NAD(P)H-hydrate dehydratase | 0.32 | QEN71_RS17885 | | DNA polymerase I | — | — |
| Escherichia coli Nissle 1917 | 0.18 | ECOLIN_RS24205 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.37 | ECOLIN_RS22270 | | DNA polymerase I | — | — |
| Castellaniella sp019104865 MT123 | 0.18 | ABCV34_RS02980 | | NAD(P)H-hydrate dehydratase | 0.30 | ABCV34_RS02195 | | DNA polymerase I | low | > 48 |
| Burkholderia phytofirmans PsJN | 0.18 | BPHYT_RS09505 | | carbohydrate kinase | 0.30 | BPHYT_RS33610 | | DNA polymerase I | low | > 109 |
| Shewanella loihica PV-4 | 0.18 | Shew_0561 | | carbohydrate kinase, YjeF-related protein (RefSeq) | 0.35 | Shew_3714 | | DNA polymerase I (RefSeq) | low | > 60 |
| Dinoroseobacter shibae DFL-12 | 0.17 | Dshi_1837 | | carbohydrate kinase, YjeF related protein (RefSeq) | 0.30 | Dshi_2909 | | DNA polymerase I (RefSeq) | low | > 64 |
| Paraburkholderia graminis OAS925 | 0.17 | ABIE53_002139 | | hydroxyethylthiazole kinase-like uncharacterized protein yjeF | 0.31 | ABIE53_004852 | | DNA polymerase-1 | low | > 113 |
| Lysobacter sp. OAE881 | 0.17 | ABIE51_RS08050 | | NAD(P)H-hydrate dehydratase | 0.33 | ABIE51_RS02010 | | DNA polymerase I | low | > 62 |
| Synechococcus elongatus PCC 7942 | 0.17 | Synpcc7942_1273 | | hypothetical protein | 0.29 | Synpcc7942_0194 | polA | DNA polymerase I | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.17 | H281DRAFT_00907 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.31 | H281DRAFT_06022 | | DNA polymerase I | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.16 | PGA1_c18700 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.32 | PGA1_c31780 | | DNA polymerase I | low | > 62 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS07115 | | hypothetical protein | 0.30 | AZOBR_RS30685 | | DNA polymerase | low | > 97 |
| Kangiella aquimarina DSM 16071 | 0.15 | B158DRAFT_1947 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.35 | B158DRAFT_0499 | | DNA polymerase I (EC 2.7.7.7) | low | > 40 |
| Caulobacter crescentus NA1000 Δfur | 0.15 | CCNA_02043 | | sugar kinase | 0.31 | CCNA_03577 | | DNA polymerase I | low | > 67 |
| Caulobacter crescentus NA1000 | 0.15 | CCNA_02043 | | sugar kinase | 0.31 | CCNA_03577 | | DNA polymerase I | low | > 66 |
| Cupriavidus basilensis FW507-4G11 | 0.15 | RR42_RS09070 | | carbohydrate kinase | 0.27 | RR42_RS15050 | | DNA polymerase I | low | > 128 |
| Rhizobium sp. OAE497 | 0.14 | ABIE40_RS09345 | | NAD(P)H-hydrate dehydratase | 0.32 | ABIE40_RS00490 | | DNA polymerase I | low | > 107 |
| Dechlorosoma suillum PS | 0.14 | Dsui_2898 | | yjeF-like protein, hydroxyethylthiazole kinase-related protein | 0.25 | Dsui_0459 | | DNA polymerase I | — | — |
| Acinetobacter radioresistens SK82 | 0.14 | MPMX26_01782 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | 0.35 | MPMX26_00574 | | DNA polymerase I | — | — |
| Rhodospirillum rubrum S1H | 0.14 | Rru_A1547 | | hypothetical protein (NCBI) | 0.29 | Rru_A3514 | | DNA polymerase A (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.14 | AMB_RS14075 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.31 | AMB_RS21305 | | DNA polymerase I | — | — |
| Rhodopseudomonas palustris CGA009 | 0.13 | TX73_015380 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.29 | TX73_024545 | | DNA polymerase I | low | > 86 |
| Mycobacterium tuberculosis H37Rv | 0.12 | Rv3433c | | Conserved protein | 0.18 | Rv1629 | | Probable DNA polymerase I PolA | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.12 | DvMF_0279 | | carbohydrate kinase, YjeF related protein (RefSeq) | 0.24 | DvMF_1713 | | DNA polymerase I (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.12 | Ga0059261_0649 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | 0.29 | Ga0059261_2244 | | DNA polymerase I (EC 2.7.7.7) | low | > 68 |
| Agrobacterium fabrum C58 | 0.12 | Atu1768 | | hypothetical protein | 0.32 | Atu0110 | | DNA polymerase I | — | — |
| Sinorhizobium meliloti 1021 | 0.11 | SMc00946 | | hypothetical protein | 0.30 | SMc02850 | | DNA polymerase I | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.10 | Ac3H11_415 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.32 | Ac3H11_1648 | | DNA polymerase I (EC 2.7.7.7) | — | — |
| Variovorax sp. SCN45 | 0.10 | GFF397 | | NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) | 0.33 | GFF4006 | | DNA polymerase I (EC 2.7.7.7) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.09 | GFF4918 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | 0.31 | GFF5584 | | DNA polymerase I (EC 2.7.7.7) | low | > 90 |
| Variovorax sp. OAS795 | 0.08 | ABID97_RS17190 | | NAD(P)H-hydrate dehydratase | 0.32 | ABID97_RS09180 | | DNA polymerase I | low | > 91 |
| Bifidobacterium breve UCC2003 | 0.08 | BBR_RS15480 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.17 | BBR_RS14315 | | DNA polymerase I | low | > 34 |
Not shown: 2 genomes with orthologs for BT4383 only; 6 genomes with orthologs for BT3260 only